Wall clock time and date at job start Tue Mar 31 2020 23:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 120.00254 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00212 * 3 2 1 5 5 H 1.48499 * 109.47063 * 29.99952 * 3 2 1 6 6 H 1.48498 * 109.47113 * 149.99858 * 3 2 1 7 7 C 1.39898 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99788 * 184.45138 * 7 2 1 9 9 C 1.41154 * 120.00207 * 4.45821 * 7 2 1 10 10 C 1.40867 * 120.16317 * 324.97357 * 9 7 2 11 11 C 1.36378 * 119.82533 * 179.68908 * 10 9 7 12 12 C 1.39474 * 120.16723 * 0.59174 * 11 10 9 13 13 N 1.39247 * 119.83287 * 179.73342 * 12 11 10 14 14 C 1.34773 * 120.00075 * 35.27004 * 13 12 11 15 15 O 1.21584 * 119.99790 * 355.71269 * 14 13 12 16 16 N 1.34777 * 120.00136 * 175.71270 * 14 13 12 17 17 C 1.46496 * 119.99995 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46947 * 180.02562 * 17 16 14 19 19 H 1.08992 * 109.47095 * 54.99638 * 18 17 16 20 20 C 1.53008 * 109.46990 * 294.99763 * 18 17 16 21 21 O 1.42894 * 109.46996 * 65.00105 * 20 18 17 22 22 C 1.52998 * 109.47013 * 175.00140 * 18 17 16 23 23 H 1.09003 * 110.45758 * 59.29502 * 22 18 17 24 24 C 1.54512 * 110.51077 * 181.90206 * 22 18 17 25 25 C 1.54476 * 104.06108 * 118.64527 * 24 22 18 26 26 O 1.44427 * 104.80668 * 23.97647 * 25 24 22 27 27 C 1.44644 * 105.36636 * 319.56884 * 26 25 24 28 28 C 1.39483 * 120.33630 * 359.70467 * 12 11 10 29 29 C 1.36374 * 120.16985 * 359.97438 * 28 12 11 30 30 H 0.97002 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.08531 * 359.97438 * 10 9 7 32 32 H 1.07990 * 119.91363 * 180.29890 * 11 10 9 33 33 H 0.97001 * 119.99637 * 215.27086 * 13 12 11 34 34 H 0.97002 * 119.99314 * 359.97438 * 16 14 13 35 35 H 1.08998 * 109.47139 * 299.99837 * 17 16 14 36 36 H 1.09005 * 109.47305 * 60.00095 * 17 16 14 37 37 H 1.08995 * 109.46743 * 185.00132 * 20 18 17 38 38 H 1.09000 * 109.47081 * 305.00332 * 20 18 17 39 39 H 0.96692 * 114.00358 * 180.02562 * 21 20 18 40 40 H 1.09002 * 110.50736 * 237.28558 * 24 22 18 41 41 H 1.08994 * 110.51234 * 359.86027 * 24 22 18 42 42 H 1.08997 * 110.37465 * 142.80832 * 25 24 22 43 43 H 1.08999 * 110.37086 * 265.03710 * 25 24 22 44 44 H 1.08999 * 110.33951 * 281.58298 * 27 26 25 45 45 H 1.09005 * 110.50455 * 159.18423 * 27 26 25 46 46 H 1.08003 * 119.91511 * 179.97438 * 28 12 11 47 47 H 1.07998 * 120.08823 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4401 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 0.0731 9 6 1.3055 -2.4322 -0.0939 10 6 0.0437 -2.5717 0.5166 11 6 -0.6319 -3.7520 0.4156 12 6 -0.0712 -4.8233 -0.2795 13 7 -0.7648 -6.0271 -0.3735 14 6 -2.1086 -6.0244 -0.4757 15 8 -2.7213 -4.9764 -0.4075 16 7 -2.7733 -7.1833 -0.6536 17 6 -4.2340 -7.1802 -0.7653 18 6 -4.7336 -8.6132 -0.9599 19 1 -4.3608 -9.2410 -0.1506 20 6 -4.2264 -9.1528 -2.2988 21 8 -2.8012 -9.2507 -2.2638 22 6 -6.2635 -8.6255 -0.9517 23 1 -6.6538 -7.9919 -1.7482 24 6 -6.7941 -10.0691 -1.0991 25 6 -7.5896 -10.3113 0.2028 26 8 -7.9618 -8.9924 0.6587 27 6 -6.8011 -8.1628 0.4206 28 6 1.1805 -4.6948 -0.8814 29 6 1.8652 -3.5187 -0.7945 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3895 -1.7445 1.0594 32 1 -1.6015 -3.8589 0.8791 33 1 -0.2806 -6.8676 -0.3655 34 1 -2.2843 -8.0192 -0.7084 35 1 -4.6671 -6.7653 0.1449 36 1 -4.5319 -6.5721 -1.6194 37 1 -4.6541 -10.1390 -2.4785 38 1 -4.5245 -8.4760 -3.0996 39 1 -2.4098 -9.5863 -3.0818 40 1 -7.4487 -10.1486 -1.9670 41 1 -5.9666 -10.7738 -1.1802 42 1 -8.4791 -10.9073 -0.0013 43 1 -6.9628 -10.8078 0.9436 44 1 -6.0529 -8.3264 1.1961 45 1 -7.0850 -7.1111 0.3819 46 1 1.6084 -5.5289 -1.4176 47 1 2.8345 -3.4208 -1.2608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280466691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:55 Heat of formation + Delta-G solvation = -130.778051 kcal Electronic energy + Delta-G solvation = -28309.978934 eV Core-core repulsion = 24263.280149 eV Total energy + Delta-G solvation = -4046.698785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.89 seconds Orbital eigenvalues (eV) -41.45179 -40.68255 -39.25752 -38.24920 -36.27269 -35.83179 -34.79758 -34.21729 -31.45704 -31.25351 -30.53657 -29.18559 -27.30844 -26.13908 -23.73091 -23.42435 -23.01772 -22.48450 -21.69559 -20.86976 -19.31260 -19.17326 -18.28015 -18.19909 -17.38741 -17.08544 -16.85808 -16.49205 -16.20053 -16.03715 -15.76677 -15.69974 -15.31623 -14.91126 -14.73457 -14.51453 -14.30290 -13.94398 -13.87881 -13.61831 -13.53276 -13.28196 -13.02385 -12.82865 -12.62854 -12.49305 -12.36821 -12.28939 -11.89781 -11.76406 -11.68201 -11.64660 -11.49614 -11.26912 -10.90239 -10.78686 -10.76398 -10.50766 -9.96610 -9.41266 -8.65990 -8.46182 -6.28935 0.90071 1.16648 1.39549 1.49262 1.54334 1.82861 2.24007 2.28969 2.86105 2.99490 3.11785 3.39200 3.58560 3.73160 3.90875 3.93283 3.98937 4.15551 4.23482 4.34168 4.37293 4.47017 4.52472 4.55680 4.62852 4.67829 4.76137 4.80854 4.85348 4.90167 5.02116 5.04519 5.12151 5.15333 5.20277 5.27251 5.37242 5.47242 5.60974 5.74517 5.83931 5.85719 6.13785 6.19290 6.28748 6.41880 6.75057 6.93759 6.99648 7.06953 7.28730 7.74865 8.47060 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.002104 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.831385 B =13305.498716 C =14170.899001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.020 3.980 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.062 3.938 10 C -0.166 4.166 11 C -0.111 4.111 12 C 0.043 3.957 13 N -0.659 5.659 14 C 0.687 3.313 15 O -0.632 6.632 16 N -0.715 5.715 17 C 0.143 3.857 18 C -0.078 4.078 19 H 0.093 0.907 20 C 0.083 3.917 21 O -0.589 6.589 22 C -0.106 4.106 23 H 0.092 0.908 24 C -0.144 4.144 25 C 0.035 3.965 26 O -0.403 6.403 27 C 0.043 3.957 28 C -0.111 4.111 29 C -0.206 4.206 30 H 0.281 0.719 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.414 0.586 34 H 0.416 0.584 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.136 0.864 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 -24.535 -5.100 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.191 4.191 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.059 3.941 10 C -0.187 4.187 11 C -0.131 4.131 12 C -0.051 4.051 13 N -0.307 5.307 14 C 0.388 3.612 15 O -0.513 6.513 16 N -0.375 5.375 17 C 0.018 3.982 18 C -0.097 4.097 19 H 0.111 0.889 20 C 0.005 3.995 21 O -0.398 6.398 22 C -0.126 4.126 23 H 0.110 0.890 24 C -0.181 4.181 25 C -0.041 4.041 26 O -0.323 6.323 27 C -0.034 4.034 28 C -0.131 4.131 29 C -0.226 4.226 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.251 0.749 34 H 0.257 0.743 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.250 0.750 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.154 0.846 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.762 -23.228 -4.371 26.400 hybrid contribution 0.664 0.287 -0.529 0.896 sum -11.099 -22.940 -4.900 25.951 Atomic orbital electron populations 1.69932 1.08951 1.29678 1.39253 1.26870 0.95700 1.04786 0.91759 0.85060 0.78784 0.75644 0.79245 1.18945 1.19776 1.17764 1.19741 0.94942 0.91091 1.46956 0.90206 1.18065 0.92688 0.93369 0.89952 1.21161 0.97970 0.96210 1.03337 1.20670 0.98640 0.94148 0.99643 1.17152 0.94641 0.87080 1.06207 1.41850 1.04557 1.07868 1.76438 1.16317 0.82124 0.84575 0.78223 1.90904 1.68187 1.32609 1.59608 1.44966 1.07530 1.07464 1.77570 1.21239 0.78761 0.97368 1.00811 1.21373 0.94412 0.94405 0.99506 0.88851 1.22254 0.81213 1.00469 0.95567 1.86191 1.20376 1.89442 1.43784 1.22373 0.92997 0.98638 0.98563 0.88983 1.23058 1.00994 0.95156 0.98925 1.23639 1.00447 0.84930 0.95131 1.89152 1.36603 1.21458 1.85050 1.23626 0.87903 0.96007 0.95850 1.20414 0.94428 0.98131 1.00132 1.20950 1.01832 0.94579 1.05260 0.90885 0.87907 0.88751 0.74910 0.74349 0.92967 0.93298 0.90584 0.93670 0.74971 0.89214 0.88316 0.87905 0.91629 0.91878 0.89349 0.84600 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.84 10.61 21.82 0.23 -48.61 16 2 C 0.02 1.06 5.42 85.24 0.46 1.52 16 3 Si 0.99 40.86 29.56 68.60 2.03 42.89 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.50 -27.89 9.02 23.39 0.21 -27.68 16 8 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 9 C 0.06 3.50 5.55 -21.27 -0.12 3.38 16 10 C -0.17 -9.73 8.61 22.48 0.19 -9.54 16 11 C -0.11 -5.96 8.61 22.13 0.19 -5.77 16 12 C 0.04 1.98 6.31 38.56 0.24 2.22 16 13 N -0.66 -23.51 5.31 -316.78 -1.68 -25.19 16 14 C 0.69 25.83 8.40 179.06 1.50 27.33 16 15 O -0.63 -30.82 13.76 -3.98 -0.05 -30.87 16 16 N -0.72 -18.60 5.01 -478.54 -2.40 -21.00 16 17 C 0.14 3.24 4.96 86.38 0.43 3.67 16 18 C -0.08 -1.02 1.60 -10.79 -0.02 -1.04 16 19 H 0.09 1.17 8.12 -2.39 -0.02 1.15 16 20 C 0.08 0.81 6.27 71.98 0.45 1.26 16 21 O -0.59 -6.47 10.88 -148.98 -1.62 -8.09 16 22 C -0.11 -1.27 2.67 -9.78 -0.03 -1.30 16 23 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 24 C -0.14 -1.12 6.14 31.61 0.19 -0.93 16 25 C 0.03 0.39 7.64 72.48 0.55 0.94 16 26 O -0.40 -7.67 11.65 -148.98 -1.74 -9.41 16 27 C 0.04 0.71 6.12 72.48 0.44 1.15 16 28 C -0.11 -4.76 9.90 22.14 0.22 -4.54 16 29 C -0.21 -10.10 9.74 22.48 0.22 -9.88 16 30 H 0.28 14.81 8.30 -92.71 -0.77 14.04 16 31 H 0.10 6.43 6.15 -2.91 -0.02 6.42 16 32 H 0.09 5.28 6.22 -2.92 -0.02 5.26 16 33 H 0.41 10.89 8.83 -92.71 -0.82 10.07 16 34 H 0.42 8.54 6.30 -92.71 -0.58 7.95 16 35 H 0.05 1.32 7.18 -2.39 -0.02 1.31 16 36 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 0.38 6.51 -2.39 -0.02 0.36 16 38 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.40 1.46 9.12 -74.06 -0.68 0.78 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.45 6.58 -2.39 -0.02 0.44 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 1.04 7.81 -2.39 -0.02 1.02 16 45 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 47 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -78.61 377.14 -1.14 -79.75 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -1.06 Total: 39.73 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.15 Total: -19.20 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.85 Total: -94.80 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -3.41 Total: -48.38 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -78.61 -1.14 -79.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280466691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.030 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.89 seconds