Wall clock time and date at job start Tue Mar 31 2020 23:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 120.00070 * 2 1 4 4 H 1.48507 * 109.47394 * 270.00384 * 3 2 1 5 5 H 1.48494 * 109.47162 * 30.00371 * 3 2 1 6 6 H 1.48497 * 109.47269 * 150.00460 * 3 2 1 7 7 C 1.39900 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00476 * 175.55607 * 7 2 1 9 9 C 1.41163 * 119.99392 * 355.55158 * 7 2 1 10 10 C 1.40871 * 120.15905 * 214.78702 * 9 7 2 11 11 C 1.36369 * 119.82693 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16886 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83523 * 180.02562 * 12 11 10 14 14 C 1.34770 * 119.99847 * 35.29583 * 13 12 11 15 15 O 1.21584 * 120.00127 * 355.70771 * 14 13 12 16 16 N 1.34781 * 119.99860 * 175.71778 * 14 13 12 17 17 C 1.46502 * 119.99967 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47089 * 179.97438 * 17 16 14 19 19 H 1.09007 * 109.46934 * 54.99632 * 18 17 16 20 20 C 1.53000 * 109.47414 * 294.99711 * 18 17 16 21 21 O 1.42901 * 109.46829 * 64.99833 * 20 18 17 22 22 C 1.53001 * 109.47401 * 174.99583 * 18 17 16 23 23 H 1.09004 * 110.82603 * 63.64399 * 22 18 17 24 24 C 1.54817 * 110.90700 * 300.00410 * 22 18 17 25 25 C 1.54095 * 104.18604 * 220.91643 * 24 22 18 26 26 O 1.43750 * 107.29518 * 357.97165 * 25 24 22 27 27 C 1.44380 * 106.97287 * 26.51106 * 26 25 24 28 28 C 1.39478 * 120.33294 * 0.28238 * 12 11 10 29 29 C 1.36378 * 120.16611 * 359.43887 * 28 12 11 30 30 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.08560 * 0.03856 * 10 9 7 32 32 H 1.07997 * 119.91591 * 179.97438 * 11 10 9 33 33 H 0.96997 * 119.99835 * 215.30021 * 13 12 11 34 34 H 0.96998 * 119.99898 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47051 * 59.99254 * 17 16 14 36 36 H 1.08998 * 109.46991 * 299.99410 * 17 16 14 37 37 H 1.08997 * 109.47126 * 184.99440 * 20 18 17 38 38 H 1.08993 * 109.47143 * 305.00222 * 20 18 17 39 39 H 0.96701 * 113.99948 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.48666 * 102.24050 * 24 22 18 41 41 H 1.08995 * 110.48467 * 339.59179 * 24 22 18 42 42 H 1.09001 * 109.88010 * 117.39248 * 25 24 22 43 43 H 1.09001 * 109.87948 * 238.54343 * 25 24 22 44 44 H 1.09000 * 110.62055 * 78.44453 * 27 26 25 45 45 H 1.09003 * 110.61607 * 201.28056 * 27 26 25 46 46 H 1.08003 * 119.91910 * 179.72217 * 28 12 11 47 47 H 1.08002 * 120.08192 * 180.27764 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.6999 7 6 2.0084 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5185 0.7948 11 6 1.1805 -4.6948 0.8812 12 6 -0.0705 -4.8237 0.2781 13 7 -0.7636 -6.0278 0.3711 14 6 -0.6815 -6.7675 1.4947 15 8 0.0582 -6.4236 2.3962 16 7 -1.4193 -7.8886 1.6188 17 6 -1.3305 -8.6924 2.8404 18 6 -2.2622 -9.9004 2.7249 19 1 -2.0235 -10.4581 1.8193 20 6 -3.7137 -9.4207 2.6608 21 8 -3.9151 -8.6717 1.4606 22 6 -2.0777 -10.8054 3.9447 23 1 -2.3722 -10.2892 4.8584 24 6 -0.6175 -11.3107 4.0418 25 6 -0.7559 -12.7877 4.4588 26 8 -2.1584 -13.0548 4.6263 27 6 -2.8684 -12.1278 3.7770 28 6 -0.6284 -3.7543 -0.4223 29 6 0.0417 -2.5700 -0.5124 30 1 -0.4850 0.8401 0.0004 31 1 2.8334 -3.4199 1.2629 32 1 1.6082 -5.5287 1.4180 33 1 -1.3055 -6.3342 -0.3728 34 1 -2.0096 -8.1628 0.8997 35 1 -1.6264 -8.0862 3.6965 36 1 -0.3049 -9.0359 2.9755 37 1 -4.3816 -10.2820 2.6680 38 1 -3.9260 -8.7890 3.5232 39 1 -4.8153 -8.3352 1.3535 40 1 -0.0694 -10.7502 4.7992 41 1 -0.1216 -11.2323 3.0744 42 1 -0.3462 -13.4323 3.6812 43 1 -0.2313 -12.9582 5.3989 44 1 -2.8433 -12.4612 2.7395 45 1 -3.8976 -12.0081 4.1156 46 1 -1.5956 -3.8630 -0.8905 47 1 -0.3936 -1.7413 -1.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280466694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:26 Heat of formation + Delta-G solvation = -106.809137 kcal Electronic energy + Delta-G solvation = -28202.882040 eV Core-core repulsion = 24157.222625 eV Total energy + Delta-G solvation = -4045.659415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -40.33264 -39.62877 -37.89984 -37.15332 -35.28101 -34.25589 -33.41970 -32.66020 -30.70262 -29.50744 -28.99614 -28.23901 -26.12368 -24.64856 -23.08164 -22.25780 -21.45963 -20.77596 -20.65013 -19.81226 -18.02808 -17.54957 -17.18938 -16.97946 -16.56181 -16.07702 -15.92130 -15.25803 -15.12871 -14.80321 -14.55488 -14.39467 -14.00818 -13.87165 -13.70666 -13.18435 -13.11279 -12.72384 -12.61808 -12.17118 -12.03689 -12.02772 -11.72645 -11.61737 -11.46266 -11.26315 -11.10509 -11.04475 -10.98145 -10.88852 -10.64936 -10.32042 -10.10003 -10.00116 -9.44781 -9.36773 -9.14515 -8.80967 -8.67500 -7.45352 -6.73692 -6.53825 -4.25708 2.75129 3.09211 3.13436 3.14610 3.19063 3.24671 3.44489 3.78225 3.84283 4.03860 4.09053 4.23145 4.51392 4.55783 4.69350 4.75541 4.78672 4.81883 4.92071 4.98562 5.12689 5.22322 5.25122 5.30051 5.37496 5.42347 5.54910 5.67040 5.72286 5.77656 5.91082 6.27830 6.42735 6.53328 6.80618 6.86731 6.96557 7.13829 7.22225 7.29021 7.37715 7.56766 7.73944 7.97522 8.08148 8.19075 8.39710 8.63766 8.72311 9.01232 9.03105 9.24098 10.37410 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.001980 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.236927 B =14136.211564 C =14730.540572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.074 0.926 9 C 0.096 3.904 10 C -0.203 4.203 11 C -0.088 4.088 12 C 0.028 3.972 13 N -0.669 5.669 14 C 0.693 3.307 15 O -0.585 6.585 16 N -0.742 5.742 17 C 0.150 3.850 18 C -0.091 4.091 19 H 0.088 0.912 20 C 0.081 3.919 21 O -0.571 6.571 22 C -0.112 4.112 23 H 0.093 0.907 24 C -0.154 4.154 25 C 0.046 3.954 26 O -0.379 6.379 27 C 0.051 3.949 28 C -0.125 4.125 29 C -0.140 4.140 30 H 0.276 0.724 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.391 0.609 34 H 0.402 0.598 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.383 0.617 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 -21.492 3.981 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.093 3.907 10 C -0.224 4.224 11 C -0.108 4.108 12 C -0.064 4.064 13 N -0.314 5.314 14 C 0.394 3.606 15 O -0.463 6.463 16 N -0.402 5.402 17 C 0.025 3.975 18 C -0.110 4.110 19 H 0.106 0.894 20 C 0.003 3.997 21 O -0.377 6.377 22 C -0.131 4.131 23 H 0.111 0.889 24 C -0.191 4.191 25 C -0.031 4.031 26 O -0.298 6.298 27 C -0.025 4.025 28 C -0.146 4.146 29 C -0.160 4.160 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.224 0.776 34 H 0.239 0.761 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.232 0.768 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.461 -21.331 4.887 23.463 hybrid contribution -0.821 0.836 -0.563 1.300 sum -9.282 -20.495 4.324 22.911 Atomic orbital electron populations 1.69771 1.07226 1.28490 1.38784 1.25859 0.94931 1.01055 0.92712 0.86216 0.80235 0.80654 0.78942 1.19620 1.20398 1.18796 1.19462 0.94633 0.90220 1.45012 0.90741 1.17710 0.92374 0.92028 0.88558 1.20808 1.01151 0.94967 1.05427 1.20427 0.92820 0.97935 0.99650 1.17095 0.93621 0.85078 1.10655 1.42099 1.51676 1.22095 1.15563 1.16054 0.81302 0.80219 0.83024 1.90890 1.42653 1.71804 1.40973 1.45134 1.47929 1.26267 1.20879 1.21038 0.98742 0.90183 0.87546 1.21412 0.94543 0.96289 0.98718 0.89409 1.22229 0.95609 0.94441 0.87413 1.86279 1.35831 1.73557 1.42039 1.22625 0.95931 0.95973 0.98572 0.88852 1.23048 0.96659 0.95962 1.03450 1.23189 0.83033 0.95199 1.01633 1.88881 1.17547 1.57752 1.65643 1.23645 0.96638 0.87153 0.95101 1.20299 0.98386 0.93077 1.02814 1.21169 0.97298 0.95445 1.02102 0.91301 0.88704 0.87374 0.77578 0.76059 0.92064 0.91713 0.93449 0.93161 0.76845 0.89750 0.89982 0.92269 0.89713 0.91878 0.88901 0.89203 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.69 10.59 55.55 0.59 -21.10 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 3 Si 0.91 19.45 29.56 -169.99 -5.03 14.43 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -12.63 9.03 -37.85 -0.34 -12.98 16 8 H 0.07 1.96 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 10 C -0.20 -5.33 9.74 -39.26 -0.38 -5.71 16 11 C -0.09 -2.20 8.61 -39.79 -0.34 -2.54 16 12 C 0.03 0.66 6.31 -83.57 -0.53 0.13 16 13 N -0.67 -12.46 5.31 -14.10 -0.07 -12.53 16 14 C 0.69 13.00 8.40 -86.92 -0.73 12.27 16 15 O -0.59 -13.49 13.76 5.29 0.07 -13.42 16 16 N -0.74 -10.02 5.01 -65.23 -0.33 -10.34 16 17 C 0.15 1.70 4.92 -4.04 -0.02 1.68 16 18 C -0.09 -0.67 1.71 -90.62 -0.15 -0.83 16 19 H 0.09 0.65 8.09 -51.92 -0.42 0.23 16 20 C 0.08 0.52 6.35 37.16 0.24 0.76 16 21 O -0.57 -4.14 10.88 -35.23 -0.38 -4.52 16 22 C -0.11 -0.73 2.66 -88.61 -0.24 -0.97 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.15 -1.04 5.52 -25.20 -0.14 -1.18 16 25 C 0.05 0.32 7.70 37.73 0.29 0.61 16 26 O -0.38 -3.39 11.52 -35.23 -0.41 -3.79 16 27 C 0.05 0.33 6.36 38.21 0.24 0.57 16 28 C -0.13 -2.94 9.90 -39.79 -0.39 -3.34 16 29 C -0.14 -3.69 8.61 -39.26 -0.34 -4.03 16 30 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 31 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.11 2.70 6.22 -52.49 -0.33 2.37 16 33 H 0.39 5.84 8.83 -40.82 -0.36 5.48 16 34 H 0.40 4.64 6.30 -40.82 -0.26 4.38 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.78 6.91 -51.93 -0.36 0.42 16 37 H 0.05 0.22 7.27 -51.93 -0.38 -0.16 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 1.43 9.12 45.56 0.42 1.84 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.56 7.52 -51.93 -0.39 0.17 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.37 8.01 -51.93 -0.42 -0.04 16 45 H 0.09 0.48 7.97 -51.93 -0.41 0.07 16 46 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 47 H 0.13 3.56 6.13 -52.49 -0.32 3.23 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -33.75 378.23 -9.53 -43.28 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.16 Total: 14.11 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.52 Total: -11.82 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.19 Total: -43.98 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.72 Total: -21.73 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.75 -9.53 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280466694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.525 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds