Wall clock time and date at job start Tue Mar 31 2020 23:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 120.00070 * 2 1 4 4 H 1.48507 * 109.47394 * 270.00384 * 3 2 1 5 5 H 1.48494 * 109.47162 * 30.00371 * 3 2 1 6 6 H 1.48497 * 109.47269 * 150.00460 * 3 2 1 7 7 C 1.39900 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00476 * 175.55607 * 7 2 1 9 9 C 1.41163 * 119.99392 * 355.55158 * 7 2 1 10 10 C 1.40871 * 120.15905 * 214.78702 * 9 7 2 11 11 C 1.36369 * 119.82693 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16886 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83523 * 180.02562 * 12 11 10 14 14 C 1.34770 * 119.99847 * 35.29583 * 13 12 11 15 15 O 1.21584 * 120.00127 * 355.70771 * 14 13 12 16 16 N 1.34781 * 119.99860 * 175.71778 * 14 13 12 17 17 C 1.46502 * 119.99967 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47089 * 179.97438 * 17 16 14 19 19 H 1.09007 * 109.46934 * 54.99632 * 18 17 16 20 20 C 1.53000 * 109.47414 * 294.99711 * 18 17 16 21 21 O 1.42901 * 109.46829 * 64.99833 * 20 18 17 22 22 C 1.53001 * 109.47401 * 174.99583 * 18 17 16 23 23 H 1.09004 * 110.82603 * 63.64399 * 22 18 17 24 24 C 1.54817 * 110.90700 * 300.00410 * 22 18 17 25 25 C 1.54095 * 104.18604 * 220.91643 * 24 22 18 26 26 O 1.43750 * 107.29518 * 357.97165 * 25 24 22 27 27 C 1.44380 * 106.97287 * 26.51106 * 26 25 24 28 28 C 1.39478 * 120.33294 * 0.28238 * 12 11 10 29 29 C 1.36378 * 120.16611 * 359.43887 * 28 12 11 30 30 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.08560 * 0.03856 * 10 9 7 32 32 H 1.07997 * 119.91591 * 179.97438 * 11 10 9 33 33 H 0.96997 * 119.99835 * 215.30021 * 13 12 11 34 34 H 0.96998 * 119.99898 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47051 * 59.99254 * 17 16 14 36 36 H 1.08998 * 109.46991 * 299.99410 * 17 16 14 37 37 H 1.08997 * 109.47126 * 184.99440 * 20 18 17 38 38 H 1.08993 * 109.47143 * 305.00222 * 20 18 17 39 39 H 0.96701 * 113.99948 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.48666 * 102.24050 * 24 22 18 41 41 H 1.08995 * 110.48467 * 339.59179 * 24 22 18 42 42 H 1.09001 * 109.88010 * 117.39248 * 25 24 22 43 43 H 1.09001 * 109.87948 * 238.54343 * 25 24 22 44 44 H 1.09000 * 110.62055 * 78.44453 * 27 26 25 45 45 H 1.09003 * 110.61607 * 201.28056 * 27 26 25 46 46 H 1.08003 * 119.91910 * 179.72217 * 28 12 11 47 47 H 1.08002 * 120.08192 * 180.27764 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.6999 7 6 2.0084 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5185 0.7948 11 6 1.1805 -4.6948 0.8812 12 6 -0.0705 -4.8237 0.2781 13 7 -0.7636 -6.0278 0.3711 14 6 -0.6815 -6.7675 1.4947 15 8 0.0582 -6.4236 2.3962 16 7 -1.4193 -7.8886 1.6188 17 6 -1.3305 -8.6924 2.8404 18 6 -2.2622 -9.9004 2.7249 19 1 -2.0235 -10.4581 1.8193 20 6 -3.7137 -9.4207 2.6608 21 8 -3.9151 -8.6717 1.4606 22 6 -2.0777 -10.8054 3.9447 23 1 -2.3722 -10.2892 4.8584 24 6 -0.6175 -11.3107 4.0418 25 6 -0.7559 -12.7877 4.4588 26 8 -2.1584 -13.0548 4.6263 27 6 -2.8684 -12.1278 3.7770 28 6 -0.6284 -3.7543 -0.4223 29 6 0.0417 -2.5700 -0.5124 30 1 -0.4850 0.8401 0.0004 31 1 2.8334 -3.4199 1.2629 32 1 1.6082 -5.5287 1.4180 33 1 -1.3055 -6.3342 -0.3728 34 1 -2.0096 -8.1628 0.8997 35 1 -1.6264 -8.0862 3.6965 36 1 -0.3049 -9.0359 2.9755 37 1 -4.3816 -10.2820 2.6680 38 1 -3.9260 -8.7890 3.5232 39 1 -4.8153 -8.3352 1.3535 40 1 -0.0694 -10.7502 4.7992 41 1 -0.1216 -11.2323 3.0744 42 1 -0.3462 -13.4323 3.6812 43 1 -0.2313 -12.9582 5.3989 44 1 -2.8433 -12.4612 2.7395 45 1 -3.8976 -12.0081 4.1156 46 1 -1.5956 -3.8630 -0.8905 47 1 -0.3936 -1.7413 -1.0513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280466694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:25 Heat of formation + Delta-G solvation = -131.473124 kcal Electronic energy + Delta-G solvation = -28203.951551 eV Core-core repulsion = 24157.222625 eV Total energy + Delta-G solvation = -4046.728926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.44327 -40.65817 -39.27444 -38.26683 -36.28807 -35.84065 -34.81340 -34.14858 -31.48106 -31.31218 -30.65723 -29.14397 -27.18000 -26.20969 -23.93523 -23.21947 -22.81257 -22.51265 -21.71979 -21.04562 -19.38435 -19.07802 -18.26993 -18.14707 -17.49436 -17.05575 -16.81244 -16.64072 -16.31076 -15.87370 -15.69475 -15.60151 -15.36136 -14.92266 -14.69519 -14.50454 -14.48403 -14.01122 -13.82358 -13.70838 -13.53643 -13.20645 -12.84598 -12.78588 -12.75335 -12.64051 -12.45715 -12.29186 -12.05123 -11.80472 -11.58546 -11.55381 -11.37732 -11.20710 -10.98988 -10.80243 -10.65001 -10.62085 -9.95159 -9.43603 -8.65164 -8.47229 -6.29488 0.87690 1.17068 1.40316 1.48344 1.55257 1.82956 2.24830 2.28776 2.84051 2.89897 3.24733 3.34295 3.61281 3.69740 3.74110 3.96511 4.07320 4.15934 4.23757 4.28278 4.42047 4.42438 4.55328 4.56546 4.62421 4.69915 4.77212 4.82525 4.86547 4.88817 4.95760 5.02542 5.08806 5.16731 5.17997 5.27875 5.36691 5.47711 5.61469 5.73070 5.87697 5.90836 6.07136 6.16194 6.33745 6.43011 6.71257 6.92581 6.99721 7.04238 7.27635 7.73547 8.45425 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.001980 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.236927 B =14136.211564 C =14730.540572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.064 3.936 10 C -0.219 4.219 11 C -0.099 4.099 12 C 0.044 3.956 13 N -0.660 5.660 14 C 0.689 3.311 15 O -0.631 6.631 16 N -0.717 5.717 17 C 0.146 3.854 18 C -0.077 4.077 19 H 0.094 0.906 20 C 0.080 3.920 21 O -0.589 6.589 22 C -0.106 4.106 23 H 0.093 0.907 24 C -0.155 4.155 25 C 0.044 3.956 26 O -0.403 6.403 27 C 0.052 3.948 28 C -0.121 4.121 29 C -0.157 4.157 30 H 0.284 0.716 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.413 0.587 34 H 0.415 0.585 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.124 0.876 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -22.502 3.568 25.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.061 3.939 10 C -0.239 4.239 11 C -0.120 4.120 12 C -0.050 4.050 13 N -0.308 5.308 14 C 0.390 3.610 15 O -0.512 6.512 16 N -0.377 5.377 17 C 0.021 3.979 18 C -0.096 4.096 19 H 0.113 0.887 20 C 0.003 3.997 21 O -0.398 6.398 22 C -0.125 4.125 23 H 0.111 0.889 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.322 6.322 27 C -0.025 4.025 28 C -0.142 4.142 29 C -0.177 4.177 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.249 0.751 34 H 0.256 0.744 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.250 0.750 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.126 0.874 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.124 -22.413 4.442 24.992 hybrid contribution -0.404 0.979 -0.403 1.133 sum -10.528 -21.435 4.039 24.220 Atomic orbital electron populations 1.69832 1.08529 1.29843 1.38909 1.26737 0.95845 1.04279 0.91680 0.85102 0.78633 0.75848 0.79448 1.18384 1.19429 1.18773 1.19690 0.94759 0.91316 1.47142 0.91037 1.18030 0.93475 0.92702 0.89665 1.20925 1.01557 0.95492 1.05928 1.20517 0.93805 0.97460 1.00170 1.17118 0.92913 0.86467 1.08539 1.41883 1.51494 1.20789 1.16626 1.16273 0.81316 0.81117 0.82338 1.90867 1.44690 1.73160 1.42476 1.45006 1.46408 1.24379 1.21871 1.21220 0.99565 0.91078 0.85995 1.21304 0.94409 0.94481 0.99365 0.88746 1.22258 0.95072 0.95306 0.87102 1.86194 1.37499 1.73859 1.42241 1.22562 0.95829 0.96009 0.98131 0.88856 1.23054 0.96912 0.95997 1.03321 1.23262 0.82513 0.95267 1.02188 1.88858 1.18425 1.58535 1.66391 1.23763 0.97042 0.86264 0.95398 1.20532 0.99353 0.91992 1.02313 1.21163 0.97445 0.96348 1.02735 0.90555 0.88711 0.87612 0.75073 0.74443 0.93456 0.92452 0.90905 0.93543 0.74982 0.90144 0.90004 0.91589 0.89288 0.90997 0.87416 0.85781 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.39 10.59 21.82 0.23 -45.15 16 2 C 0.03 1.36 5.42 85.24 0.46 1.83 16 3 Si 0.99 40.02 29.56 68.60 2.03 42.05 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.50 -28.07 9.03 23.39 0.21 -27.86 16 8 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 9 C 0.06 3.62 5.55 -21.28 -0.12 3.50 16 10 C -0.22 -11.86 9.74 22.48 0.22 -11.64 16 11 C -0.10 -5.03 8.61 22.13 0.19 -4.84 16 12 C 0.04 2.00 6.31 38.56 0.24 2.24 16 13 N -0.66 -23.48 5.31 -316.79 -1.68 -25.17 16 14 C 0.69 25.08 8.40 179.06 1.50 26.58 16 15 O -0.63 -29.13 13.76 -3.98 -0.05 -29.18 16 16 N -0.72 -18.09 5.01 -478.55 -2.40 -20.48 16 17 C 0.15 3.13 4.92 86.38 0.43 3.55 16 18 C -0.08 -0.96 1.71 -10.79 -0.02 -0.98 16 19 H 0.09 1.12 8.09 -2.38 -0.02 1.10 16 20 C 0.08 0.81 6.35 71.98 0.46 1.26 16 21 O -0.59 -6.77 10.88 -148.98 -1.62 -8.39 16 22 C -0.11 -1.19 2.66 -9.49 -0.03 -1.22 16 23 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 24 C -0.16 -1.93 5.52 31.58 0.17 -1.76 16 25 C 0.04 0.56 7.70 72.35 0.56 1.12 16 26 O -0.40 -6.54 11.52 -148.98 -1.72 -8.26 16 27 C 0.05 0.54 6.36 72.66 0.46 1.00 16 28 C -0.12 -5.61 9.90 22.13 0.22 -5.39 16 29 C -0.16 -8.40 8.61 22.48 0.19 -8.20 16 30 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 31 H 0.09 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.11 5.38 6.22 -2.91 -0.02 5.36 16 33 H 0.41 11.16 8.83 -92.71 -0.82 10.35 16 34 H 0.42 8.45 6.30 -92.71 -0.58 7.86 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.34 6.91 -2.39 -0.02 1.32 16 37 H 0.07 0.40 7.27 -2.39 -0.02 0.38 16 38 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.40 1.78 9.12 -74.06 -0.68 1.10 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 1.02 7.52 -2.39 -0.02 1.00 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.63 8.01 -2.39 -0.02 0.62 16 45 H 0.11 0.79 7.97 -2.39 -0.02 0.77 16 46 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 47 H 0.12 6.63 6.13 -2.91 -0.02 6.61 16 Total: -1.00 -74.47 378.23 -1.12 -75.59 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -1.06 Total: 39.81 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 5.16 Total: -20.80 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.85 Total: -90.81 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -3.39 Total: -45.83 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -74.47 -1.12 -75.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280466694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.884 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds