Wall clock time and date at job start Wed Apr 1 2020 00:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86792 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47039 * 269.99655 * 3 2 1 5 5 H 1.48501 * 109.47325 * 29.99719 * 3 2 1 6 6 H 1.48502 * 109.46951 * 150.00182 * 3 2 1 7 7 C 1.38658 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99349 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00451 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00218 * 185.05575 * 9 7 2 11 11 C 1.38883 * 120.07032 * 354.46414 * 10 9 7 12 12 C 1.38094 * 119.93147 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.07260 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93324 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47227 * 90.00217 * 14 13 12 16 16 C 1.34777 * 119.99908 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00192 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99820 * 179.97438 * 16 15 14 19 19 C 1.46493 * 119.99986 * 179.72134 * 18 16 15 20 20 C 1.52998 * 109.47401 * 179.97438 * 19 18 16 21 21 C 1.52994 * 109.47450 * 179.97438 * 20 19 18 22 22 O 1.42903 * 112.84793 * 53.80915 * 21 20 19 23 23 C 1.53772 * 113.61717 * 282.49956 * 21 20 19 24 24 C 1.53786 * 87.08368 * 220.01579 * 23 21 20 25 25 C 1.53782 * 113.61511 * 184.99801 * 21 20 19 26 26 C 1.38309 * 120.13473 * 0.25192 * 13 12 11 27 27 C 1.38099 * 120.06733 * 359.44759 * 26 13 12 28 28 H 0.96997 * 119.99398 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03238 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96644 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.47004 * 329.99485 * 14 13 12 32 32 H 1.09003 * 109.47078 * 210.00150 * 14 13 12 33 33 H 0.97006 * 119.99810 * 359.97438 * 15 14 13 34 34 H 0.97006 * 119.99898 * 359.97438 * 18 16 15 35 35 H 1.08999 * 109.47128 * 299.99733 * 19 18 16 36 36 H 1.09002 * 109.47089 * 59.99793 * 19 18 16 37 37 H 1.09004 * 109.47092 * 300.00636 * 20 19 18 38 38 H 1.09002 * 109.46835 * 60.00045 * 20 19 18 39 39 H 0.96705 * 113.99743 * 309.66547 * 22 21 20 40 40 H 1.08999 * 113.61849 * 334.56798 * 23 21 20 41 41 H 1.09004 * 113.61951 * 105.47192 * 23 21 20 42 42 H 1.08996 * 113.61315 * 270.88603 * 24 23 21 43 43 H 1.08994 * 113.61124 * 139.98036 * 24 23 21 44 44 H 1.08998 * 113.61552 * 254.52983 * 25 21 20 45 45 H 1.09000 * 113.61397 * 25.44028 * 25 21 20 46 46 H 1.08005 * 119.96314 * 179.70784 * 26 13 12 47 47 H 1.08005 * 120.02998 * 180.27390 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4572 -3.4396 0.0952 12 6 4.2022 -4.5972 0.2038 13 6 3.5685 -5.8205 0.3244 14 6 4.3846 -7.0818 0.4422 15 7 4.6552 -7.3583 1.8551 16 6 5.3744 -8.4435 2.2038 17 8 5.7982 -9.1934 1.3456 18 7 5.6238 -8.6975 3.5037 19 6 6.4003 -9.8804 3.8830 20 6 6.5379 -9.9334 5.4059 21 6 7.3483 -11.1691 5.8021 22 8 8.6098 -11.2427 5.1348 23 6 6.5428 -12.4778 5.7469 24 6 7.2644 -12.8847 7.0425 25 6 7.4422 -11.3830 7.3221 26 6 2.1871 -5.8891 0.3314 27 6 1.4364 -4.7345 0.2293 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4847 -0.0002 30 1 5.2810 -4.5473 0.1938 31 1 5.3272 -6.9557 -0.0905 32 1 3.8310 -7.9147 0.0086 33 1 4.3174 -6.7598 2.5398 34 1 5.2859 -8.0991 4.1884 35 1 5.8901 -10.7776 3.5326 36 1 7.3905 -9.8254 3.4308 37 1 7.0482 -9.0361 5.7560 38 1 5.5478 -9.9883 5.8585 39 1 8.5545 -11.1322 4.1757 40 1 5.4693 -12.3355 5.8712 41 1 6.7911 -13.1078 4.8926 42 1 8.2035 -13.4113 6.8724 43 1 6.6192 -13.3893 7.7616 44 1 8.4165 -11.1289 7.7394 45 1 6.6145 -10.9412 7.8771 46 1 1.6950 -6.8464 0.4209 47 1 0.3578 -4.7884 0.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285570524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:37 Heat of formation + Delta-G solvation = -67.345022 kcal Electronic energy + Delta-G solvation = -27029.421096 eV Core-core repulsion = 22985.472973 eV Total energy + Delta-G solvation = -4043.948122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.42286 -39.81855 -39.08721 -36.96482 -35.45646 -34.96288 -34.35124 -32.40303 -31.22794 -30.29630 -29.55955 -26.38072 -26.01950 -25.28980 -24.28989 -22.14426 -22.07204 -21.02626 -20.64254 -20.11205 -18.55359 -18.08510 -17.11449 -17.03433 -16.45588 -16.07597 -15.56404 -15.41599 -15.00529 -14.76014 -14.59521 -14.40975 -14.23805 -14.01611 -13.78643 -13.71651 -13.41255 -12.96050 -12.88823 -12.80497 -12.54975 -12.24806 -12.11923 -11.75090 -11.64168 -11.55369 -11.41295 -11.30329 -10.98633 -10.81330 -10.70501 -10.64327 -10.50961 -10.27927 -10.05818 -9.45139 -9.37509 -8.93363 -8.80202 -8.30673 -7.35433 -6.55092 -4.14020 1.99731 2.10989 2.77144 3.07273 3.07956 3.12741 3.19953 3.56750 3.88542 3.98820 4.11396 4.17057 4.37267 4.43451 4.56102 4.66382 4.73895 4.98959 4.99900 5.13643 5.17004 5.21626 5.22754 5.30256 5.42346 5.46343 5.48392 5.52356 5.63593 5.65107 5.79989 5.81301 5.89743 5.90996 6.10113 6.27368 6.33305 6.54491 6.59022 6.77965 6.84270 6.96422 7.13496 7.19724 7.25743 7.33114 7.69348 7.89602 7.99426 8.57753 8.90252 9.58306 10.62364 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.001620 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.362528 B =17274.693505 C =17724.505410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.215 4.215 14 C 0.198 3.802 15 N -0.737 5.737 16 C 0.701 3.299 17 O -0.597 6.597 18 N -0.750 5.750 19 C 0.137 3.863 20 C -0.151 4.151 21 C 0.112 3.888 22 O -0.543 6.543 23 C -0.167 4.167 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.054 4.054 27 C -0.196 4.196 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.381 0.619 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.891 -19.389 12.621 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.075 3.925 15 N -0.392 5.392 16 C 0.400 3.600 17 O -0.476 6.476 18 N -0.407 5.407 19 C 0.012 3.988 20 C -0.189 4.189 21 C 0.071 3.929 22 O -0.350 6.350 23 C -0.205 4.205 24 C -0.173 4.173 25 C -0.164 4.164 26 C -0.072 4.072 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.054 -19.946 12.370 26.385 hybrid contribution -0.094 1.584 0.033 1.587 sum 11.961 -18.362 12.403 25.180 Atomic orbital electron populations 1.70040 1.06005 1.27875 1.45395 1.25322 0.95866 0.98937 0.96332 0.85692 0.78920 0.79901 0.78821 1.19778 1.20178 1.19143 1.21359 0.91876 0.80720 1.53033 0.88911 1.83975 1.34525 1.11574 1.77506 1.19443 0.90325 0.88051 0.91609 1.21161 0.93772 0.98965 1.11770 1.20648 0.98396 0.91617 0.96208 1.19223 0.93558 0.93636 1.15213 1.19831 0.98285 0.94596 0.79785 1.45516 1.57284 1.26722 1.09688 1.16026 0.79377 0.81939 0.82620 1.90909 1.57547 1.50042 1.49095 1.45076 1.59898 1.29357 1.06322 1.21075 0.95868 0.87975 0.93838 1.22362 1.01530 0.99511 0.95496 1.22110 0.84040 0.92638 0.94146 1.86484 1.28475 1.95323 1.24710 1.23654 0.99933 0.97772 0.99134 1.22756 1.00974 0.96174 0.97434 1.23034 1.03092 0.96799 0.93523 1.20541 0.92775 0.96814 0.97115 1.20219 0.99674 0.90247 1.11370 0.91873 0.85423 0.87385 0.91764 0.91725 0.76868 0.76980 0.91498 0.91820 0.90244 0.89890 0.76942 0.89252 0.90783 0.89810 0.91316 0.90506 0.88782 0.86950 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.86 29.55 -169.99 -5.02 14.84 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.77 9.76 0.08 0.00 -4.77 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.24 -4.85 9.17 -39.40 -0.36 -5.22 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.38 5.25 -104.57 -0.55 -3.93 16 14 C 0.20 2.75 5.80 -5.20 -0.03 2.72 16 15 N -0.74 -9.04 5.55 -66.42 -0.37 -9.41 16 16 C 0.70 9.15 8.57 -86.91 -0.74 8.40 16 17 O -0.60 -10.12 16.34 5.29 0.09 -10.04 16 18 N -0.75 -6.82 5.56 -65.23 -0.36 -7.19 16 19 C 0.14 1.07 5.24 -4.05 -0.02 1.05 16 20 C -0.15 -0.85 4.96 -26.74 -0.13 -0.98 16 21 C 0.11 0.71 1.38 -89.81 -0.12 0.59 16 22 O -0.54 -4.22 13.39 -35.23 -0.47 -4.70 16 23 C -0.17 -0.98 7.32 -25.92 -0.19 -1.17 16 24 C -0.14 -0.79 8.02 -25.91 -0.21 -1.00 16 25 C -0.13 -0.74 7.47 -25.92 -0.19 -0.94 16 26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 27 C -0.20 -3.89 9.99 -39.40 -0.39 -4.28 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.40 4.23 8.48 -40.82 -0.35 3.88 16 34 H 0.40 2.64 8.49 -40.82 -0.35 2.29 16 35 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.06 0.53 6.75 -51.93 -0.35 0.18 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.39 8.05 -51.93 -0.42 -0.03 16 39 H 0.38 2.11 7.18 45.56 0.33 2.44 16 40 H 0.09 0.46 8.03 -51.93 -0.42 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.42 8.10 -51.93 -0.42 0.00 16 46 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 47 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -32.77 392.67 -9.56 -42.33 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.32 Total: 9.90 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.78 Total: -13.19 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.03 Total: -40.30 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.38 Total: -19.50 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.77 -9.56 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285570524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.013 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds