Wall clock time and date at job start Wed Apr 1 2020 00:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86792 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47039 * 269.99655 * 3 2 1 5 5 H 1.48501 * 109.47325 * 29.99719 * 3 2 1 6 6 H 1.48502 * 109.46951 * 150.00182 * 3 2 1 7 7 C 1.38658 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99349 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00451 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00218 * 185.05575 * 9 7 2 11 11 C 1.38883 * 120.07032 * 354.46414 * 10 9 7 12 12 C 1.38094 * 119.93147 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.07260 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.93324 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47227 * 90.00217 * 14 13 12 16 16 C 1.34777 * 119.99908 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00192 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99820 * 179.97438 * 16 15 14 19 19 C 1.46493 * 119.99986 * 179.72134 * 18 16 15 20 20 C 1.52998 * 109.47401 * 179.97438 * 19 18 16 21 21 C 1.52994 * 109.47450 * 179.97438 * 20 19 18 22 22 O 1.42903 * 112.84793 * 53.80915 * 21 20 19 23 23 C 1.53772 * 113.61717 * 282.49956 * 21 20 19 24 24 C 1.53786 * 87.08368 * 220.01579 * 23 21 20 25 25 C 1.53782 * 113.61511 * 184.99801 * 21 20 19 26 26 C 1.38309 * 120.13473 * 0.25192 * 13 12 11 27 27 C 1.38099 * 120.06733 * 359.44759 * 26 13 12 28 28 H 0.96997 * 119.99398 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03238 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.96644 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.47004 * 329.99485 * 14 13 12 32 32 H 1.09003 * 109.47078 * 210.00150 * 14 13 12 33 33 H 0.97006 * 119.99810 * 359.97438 * 15 14 13 34 34 H 0.97006 * 119.99898 * 359.97438 * 18 16 15 35 35 H 1.08999 * 109.47128 * 299.99733 * 19 18 16 36 36 H 1.09002 * 109.47089 * 59.99793 * 19 18 16 37 37 H 1.09004 * 109.47092 * 300.00636 * 20 19 18 38 38 H 1.09002 * 109.46835 * 60.00045 * 20 19 18 39 39 H 0.96705 * 113.99743 * 309.66547 * 22 21 20 40 40 H 1.08999 * 113.61849 * 334.56798 * 23 21 20 41 41 H 1.09004 * 113.61951 * 105.47192 * 23 21 20 42 42 H 1.08996 * 113.61315 * 270.88603 * 24 23 21 43 43 H 1.08994 * 113.61124 * 139.98036 * 24 23 21 44 44 H 1.08998 * 113.61552 * 254.52983 * 25 21 20 45 45 H 1.09000 * 113.61397 * 25.44028 * 25 21 20 46 46 H 1.08005 * 119.96314 * 179.70784 * 26 13 12 47 47 H 1.08005 * 120.02998 * 180.27390 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4572 -3.4396 0.0952 12 6 4.2022 -4.5972 0.2038 13 6 3.5685 -5.8205 0.3244 14 6 4.3846 -7.0818 0.4422 15 7 4.6552 -7.3583 1.8551 16 6 5.3744 -8.4435 2.2038 17 8 5.7982 -9.1934 1.3456 18 7 5.6238 -8.6975 3.5037 19 6 6.4003 -9.8804 3.8830 20 6 6.5379 -9.9334 5.4059 21 6 7.3483 -11.1691 5.8021 22 8 8.6098 -11.2427 5.1348 23 6 6.5428 -12.4778 5.7469 24 6 7.2644 -12.8847 7.0425 25 6 7.4422 -11.3830 7.3221 26 6 2.1871 -5.8891 0.3314 27 6 1.4364 -4.7345 0.2293 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4847 -0.0002 30 1 5.2810 -4.5473 0.1938 31 1 5.3272 -6.9557 -0.0905 32 1 3.8310 -7.9147 0.0086 33 1 4.3174 -6.7598 2.5398 34 1 5.2859 -8.0991 4.1884 35 1 5.8901 -10.7776 3.5326 36 1 7.3905 -9.8254 3.4308 37 1 7.0482 -9.0361 5.7560 38 1 5.5478 -9.9883 5.8585 39 1 8.5545 -11.1322 4.1757 40 1 5.4693 -12.3355 5.8712 41 1 6.7911 -13.1078 4.8926 42 1 8.2035 -13.4113 6.8724 43 1 6.6192 -13.3893 7.7616 44 1 8.4165 -11.1289 7.7394 45 1 6.6145 -10.9412 7.8771 46 1 1.6950 -6.8464 0.4209 47 1 0.3578 -4.7884 0.2393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285570524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:35 Heat of formation + Delta-G solvation = -91.530230 kcal Electronic energy + Delta-G solvation = -27030.469845 eV Core-core repulsion = 22985.472973 eV Total energy + Delta-G solvation = -4044.996872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.22600 -40.80245 -40.45147 -38.54407 -36.25951 -35.58256 -35.52902 -34.27412 -32.13629 -31.81197 -30.76219 -27.69499 -26.83809 -26.42829 -25.28213 -23.63949 -22.70675 -22.19740 -21.92575 -20.59210 -19.89294 -19.50022 -18.81438 -17.75502 -17.21618 -16.92734 -16.48739 -16.33212 -16.22646 -15.99096 -15.83245 -15.54655 -15.49466 -15.25225 -14.96936 -14.80367 -14.46191 -14.36050 -14.21164 -13.69047 -13.41153 -13.36063 -13.08682 -13.02303 -12.76965 -12.55092 -12.36679 -12.22333 -12.21725 -12.11555 -12.02561 -11.75093 -11.47685 -11.19778 -11.03313 -10.80580 -10.58869 -10.35367 -9.81721 -9.71980 -9.01583 -8.48224 -6.16439 0.53214 0.58339 1.36186 1.44014 1.53068 1.82544 2.17245 2.18278 2.80576 3.11538 3.13609 3.42529 3.48867 3.52408 3.66819 3.88845 3.92586 3.95376 4.04223 4.15928 4.18137 4.21302 4.47898 4.50284 4.57544 4.61412 4.76381 4.81386 4.81873 4.85724 4.94381 5.03138 5.05194 5.05767 5.14830 5.16416 5.27285 5.35566 5.44327 5.47909 5.52577 5.54195 5.69535 5.76298 6.01608 6.03117 6.16964 6.74829 6.96664 7.11132 7.60125 7.75908 8.74484 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.001620 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.362528 B =17274.693505 C =17724.505410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.637 6.637 18 N -0.734 5.734 19 C 0.137 3.863 20 C -0.137 4.137 21 C 0.106 3.894 22 O -0.561 6.561 23 C -0.166 4.166 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.042 4.042 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.120 0.880 30 H 0.138 0.862 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.408 0.592 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.388 0.612 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.648 -20.851 13.884 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.398 3.602 17 O -0.519 6.519 18 N -0.391 5.391 19 C 0.013 3.987 20 C -0.175 4.175 21 C 0.065 3.935 22 O -0.370 6.370 23 C -0.204 4.204 24 C -0.176 4.176 25 C -0.164 4.164 26 C -0.061 4.061 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.247 0.753 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.238 0.762 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.165 0.835 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.842 -21.452 13.681 28.965 hybrid contribution -0.485 1.616 -0.315 1.716 sum 13.356 -19.836 13.366 27.396 Atomic orbital electron populations 1.70182 1.08009 1.28837 1.48577 1.26572 0.96819 1.02720 0.95792 0.84598 0.77865 0.74641 0.79211 1.18949 1.19673 1.17566 1.21832 0.92577 0.81340 1.53241 0.87900 1.83944 1.36082 1.12685 1.80836 1.20001 0.91631 0.87959 0.93271 1.21243 0.93010 1.00068 1.12007 1.20937 0.99792 0.90723 0.94878 1.19492 0.93452 0.94098 1.11191 1.19704 0.98031 0.93305 0.80928 1.45239 1.57298 1.26893 1.09196 1.16139 0.79125 0.81532 0.83366 1.90892 1.59116 1.51343 1.50554 1.44966 1.59095 1.29713 1.05329 1.21137 0.95192 0.87084 0.95294 1.22266 1.02291 0.99263 0.93722 1.22242 0.83714 0.93130 0.94438 1.86462 1.29587 1.95440 1.25472 1.23672 1.00504 0.97379 0.98828 1.22754 1.00694 0.96331 0.97785 1.23104 1.03299 0.96786 0.93246 1.20885 0.93053 0.96970 0.95173 1.20453 1.00093 0.90383 1.11453 0.91819 0.86221 0.84375 0.91516 0.91192 0.75660 0.75254 0.92173 0.92435 0.89931 0.88270 0.76171 0.88107 0.91518 0.90978 0.90223 0.91486 0.86990 0.83473 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.05 13.67 21.62 0.30 -54.76 16 2 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 3 Si 1.02 41.60 29.55 68.60 2.03 43.63 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.41 -23.31 9.49 67.92 0.64 -22.66 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 9 O -0.23 -13.32 9.76 -22.64 -0.22 -13.54 16 10 C 0.12 5.75 6.65 22.58 0.15 5.90 16 11 C -0.24 -9.90 9.17 22.39 0.21 -9.69 16 12 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 13 C -0.18 -5.07 5.25 -19.83 -0.10 -5.18 16 14 C 0.20 4.87 5.80 85.63 0.50 5.37 16 15 N -0.73 -15.18 5.55 -482.30 -2.68 -17.86 16 16 C 0.70 16.14 8.57 179.05 1.53 17.67 16 17 O -0.64 -20.16 16.34 -3.99 -0.07 -20.22 16 18 N -0.73 -11.10 5.56 -478.54 -2.66 -13.76 16 19 C 0.14 1.82 5.24 86.38 0.45 2.27 16 20 C -0.14 -1.17 4.96 30.59 0.15 -1.02 16 21 C 0.11 1.15 1.38 -10.27 -0.01 1.14 16 22 O -0.56 -8.17 13.39 -148.98 -1.99 -10.17 16 23 C -0.17 -1.66 7.32 31.12 0.23 -1.43 16 24 C -0.14 -1.41 8.02 31.12 0.25 -1.16 16 25 C -0.13 -1.24 7.47 31.12 0.23 -1.01 16 26 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 27 C -0.20 -8.07 9.99 22.39 0.22 -7.85 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.12 4.98 5.64 -2.91 -0.02 4.97 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 32 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.41 7.01 8.48 -92.70 -0.79 6.22 16 34 H 0.41 3.94 8.49 -92.70 -0.79 3.15 16 35 H 0.06 0.92 8.05 -2.39 -0.02 0.90 16 36 H 0.06 0.86 6.75 -2.39 -0.02 0.84 16 37 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.10 0.56 8.05 -2.39 -0.02 0.54 16 39 H 0.39 4.01 7.18 -74.05 -0.53 3.48 16 40 H 0.10 0.77 8.03 -2.39 -0.02 0.75 16 41 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.11 0.67 8.10 -2.39 -0.02 0.65 16 46 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 47 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -75.25 392.67 -1.04 -76.29 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -1.08 Total: 30.98 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 5.35 Total: -20.59 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -5.04 Total: -86.38 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.28 Total: -43.93 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -75.25 -1.04 -76.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285570524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.242 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds