Wall clock time and date at job start Wed Apr 1 2020 00:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47174 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46742 * 120.00173 * 3 2 1 7 7 C 1.37876 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99306 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46701 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46794 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00225 * 180.02562 * 12 11 10 14 14 O 1.21344 * 119.99498 * 359.97438 * 13 12 11 15 15 C 1.49444 * 120.00048 * 180.02562 * 13 12 11 16 16 O 1.21352 * 120.00337 * 5.31579 * 15 13 12 17 17 N 1.34783 * 120.00225 * 185.31586 * 15 13 12 18 18 C 1.46502 * 119.99456 * 354.65924 * 17 15 13 19 19 C 1.53004 * 109.46599 * 275.07638 * 18 17 15 20 20 O 1.42901 * 109.47181 * 65.00785 * 19 18 17 21 21 C 1.46498 * 120.00353 * 174.65394 * 17 15 13 22 22 C 1.50693 * 109.46895 * 90.00404 * 21 17 15 23 23 C 1.38236 * 120.00533 * 89.99868 * 22 21 17 24 24 C 1.38230 * 120.00198 * 179.97438 * 23 22 21 25 25 C 1.38228 * 120.00197 * 359.97438 * 24 23 22 26 26 C 1.38230 * 120.00231 * 0.27386 * 25 24 23 27 27 C 1.38238 * 119.99895 * 359.51539 * 26 25 24 28 28 H 0.96999 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47139 * 60.00266 * 9 7 2 30 30 H 1.09003 * 109.47027 * 300.00580 * 9 7 2 31 31 H 1.08998 * 109.47264 * 60.00382 * 10 9 7 32 32 H 1.08997 * 109.46923 * 300.00127 * 10 9 7 33 33 H 1.08998 * 109.47141 * 60.00072 * 11 10 9 34 34 H 1.08997 * 109.47345 * 299.99635 * 11 10 9 35 35 H 0.97008 * 120.00185 * 0.02562 * 12 11 10 36 36 H 1.09005 * 109.47387 * 35.07352 * 18 17 15 37 37 H 1.09003 * 109.47269 * 155.07909 * 18 17 15 38 38 H 1.09007 * 109.46843 * 185.00111 * 19 18 17 39 39 H 1.09000 * 109.47496 * 304.99629 * 19 18 17 40 40 H 0.96700 * 113.99706 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.46766 * 330.00247 * 21 17 15 42 42 H 1.08994 * 109.46860 * 210.00116 * 21 17 15 43 43 H 1.08006 * 119.99388 * 359.97438 * 23 22 21 44 44 H 1.08005 * 119.99662 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.00016 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00705 * 179.72322 * 26 25 24 47 47 H 1.07999 * 120.00293 * 180.27759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1005 -0.0006 13 6 1.9832 -7.3713 -0.0015 14 8 0.7901 -7.5930 -0.0024 15 6 2.9543 -8.5071 -0.0003 16 8 4.1439 -8.2883 0.0989 17 7 2.5092 -9.7746 -0.1094 18 6 1.0698 -10.0477 -0.1112 19 6 0.5682 -10.1491 1.3307 20 8 0.7115 -8.8817 1.9751 21 6 3.4645 -10.8791 -0.2261 22 6 3.8148 -11.3876 1.1485 23 6 3.0682 -12.3996 1.7222 24 6 3.3899 -12.8664 2.9829 25 6 4.4586 -12.3215 3.6698 26 6 5.2021 -11.3060 3.0983 27 6 4.8831 -10.8421 1.8357 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6042 -0.8905 33 1 0.8540 -5.0445 -0.8914 34 1 0.8534 -5.0451 0.8886 35 1 3.3861 -5.9233 0.0005 36 1 0.5471 -9.2388 -0.6218 37 1 0.8790 -10.9876 -0.6293 38 1 -0.4825 -10.4396 1.3302 39 1 1.1518 -10.8975 1.8667 40 1 0.4128 -8.8722 2.8948 41 1 4.3677 -10.5270 -0.7244 42 1 3.0186 -11.6850 -0.8089 43 1 2.2334 -12.8256 1.1854 44 1 2.8067 -13.6574 3.4310 45 1 4.7102 -12.6865 4.6547 46 1 6.0344 -10.8772 3.6367 47 1 5.4668 -10.0518 1.3873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286658246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:45 Heat of formation + Delta-G solvation = -88.501256 kcal Electronic energy + Delta-G solvation = -28755.364320 eV Core-core repulsion = 24710.498795 eV Total energy + Delta-G solvation = -4044.865526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.99 seconds Orbital eigenvalues (eV) -40.86886 -39.45364 -38.20130 -37.27658 -35.70193 -35.14999 -33.24206 -32.14425 -31.19096 -31.14018 -29.38992 -27.51650 -26.55051 -24.19225 -23.14996 -22.80331 -22.27990 -21.30392 -20.65185 -19.49591 -17.80488 -17.42679 -17.24718 -16.75555 -16.33945 -16.02361 -15.54669 -15.36485 -15.27521 -15.06134 -14.72147 -14.43682 -14.28607 -13.83014 -13.68077 -13.57593 -13.43745 -13.05291 -12.77923 -12.69405 -12.27067 -12.16381 -11.84481 -11.77566 -11.63605 -11.37038 -11.23574 -11.13490 -10.85903 -10.68688 -10.59816 -10.02819 -9.83067 -9.57575 -9.26352 -9.16433 -9.14335 -9.09087 -8.80595 -8.66688 -8.34643 -5.99623 -4.02396 0.97820 1.14262 1.65826 2.46589 3.34453 3.38728 3.41041 3.44491 3.47706 3.68094 4.21307 4.44036 4.47200 4.47372 4.64356 4.72580 4.83234 4.91280 4.96468 5.10153 5.18698 5.26020 5.31906 5.34190 5.36138 5.38173 5.69517 5.71680 5.78042 5.79761 5.82712 6.15344 6.16255 6.18323 6.25956 6.33297 6.52108 6.62913 6.72438 6.83801 6.94475 7.02509 7.49837 7.63952 7.65678 7.78452 7.88471 7.99250 8.32408 8.41225 9.04006 9.61600 11.11646 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.002165 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.317248 B =12931.572181 C =13412.138287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.119 3.881 12 N -0.700 5.700 13 C 0.507 3.493 14 O -0.494 6.494 15 C 0.520 3.480 16 O -0.525 6.525 17 N -0.581 5.581 18 C 0.088 3.912 19 C 0.064 3.936 20 O -0.549 6.549 21 C 0.151 3.849 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.123 4.123 27 C -0.092 4.092 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.369 0.631 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 -30.306 3.278 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.003 4.003 12 N -0.352 5.352 13 C 0.287 3.713 14 O -0.370 6.370 15 C 0.304 3.696 16 O -0.401 6.401 17 N -0.314 5.314 18 C -0.034 4.034 19 C -0.015 4.015 20 O -0.352 6.352 21 C 0.029 3.971 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.242 0.758 36 H 0.149 0.851 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.215 0.785 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.896 -30.035 2.706 30.551 hybrid contribution 0.592 0.678 0.799 1.204 sum 5.488 -29.357 3.505 30.070 Atomic orbital electron populations 1.69953 1.06044 1.26768 1.50602 1.25025 0.94865 0.99283 0.95296 0.86637 0.79552 0.83066 0.78617 1.20238 1.21303 1.20242 1.21176 0.93011 0.90942 1.50903 0.92659 1.19020 0.93805 0.90793 0.97636 1.21912 0.99826 0.93162 1.01137 1.21724 0.91678 0.84700 1.02195 1.46003 1.11776 1.04983 1.72450 1.19734 0.88561 0.84077 0.78944 1.90597 1.16006 1.83310 1.47055 1.20396 0.88504 0.84161 0.76566 1.90702 1.16884 1.84506 1.48036 1.47727 1.07463 1.05013 1.71188 1.22441 0.79647 1.04439 0.96904 1.22500 0.98795 0.86217 0.93949 1.86729 1.87862 1.31520 1.29117 1.20508 0.94329 0.88844 0.93433 1.20188 0.96318 0.96895 0.97289 1.20993 0.99069 0.96863 0.95636 1.21094 0.97863 1.00425 0.95120 1.21179 0.95762 0.96827 0.99786 1.21210 1.00067 0.97163 0.95628 1.21265 0.96618 0.98575 0.94550 0.92902 0.96255 0.96254 0.92571 0.92600 0.91486 0.91340 0.75802 0.85149 0.89885 0.93235 0.93899 0.78516 0.88755 0.89266 0.86305 0.86209 0.86243 0.86048 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.64 4.97 -27.89 -0.14 0.50 16 10 C -0.12 -2.46 5.27 -26.73 -0.14 -2.60 16 11 C 0.12 2.13 5.67 -4.04 -0.02 2.11 16 12 N -0.70 -11.16 5.55 -60.73 -0.34 -11.49 16 13 C 0.51 7.97 7.03 -11.59 -0.08 7.89 16 14 O -0.49 -8.27 10.93 -18.06 -0.20 -8.47 16 15 C 0.52 7.36 7.30 -11.59 -0.08 7.27 16 16 O -0.53 -8.13 15.30 5.50 0.08 -8.05 16 17 N -0.58 -6.36 2.46 -175.57 -0.43 -6.79 16 18 C 0.09 0.84 5.74 -4.04 -0.02 0.81 16 19 C 0.06 0.61 7.35 37.16 0.27 0.88 16 20 O -0.55 -6.76 10.05 -58.79 -0.59 -7.35 16 21 C 0.15 1.32 5.53 -5.20 -0.03 1.29 16 22 C -0.11 -0.98 5.36 -104.62 -0.56 -1.54 16 23 C -0.11 -0.83 7.79 -39.59 -0.31 -1.14 16 24 C -0.13 -0.96 10.05 -39.59 -0.40 -1.36 16 25 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.09 -0.95 9.56 -39.58 -0.38 -1.33 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.41 6.07 7.96 -40.82 -0.32 5.74 16 36 H 0.13 1.57 5.15 -52.21 -0.27 1.30 16 37 H 0.08 0.51 7.84 -51.93 -0.41 0.11 16 38 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.04 0.37 5.96 -51.93 -0.31 0.07 16 40 H 0.37 3.28 9.12 45.56 0.42 3.70 16 41 H 0.09 0.88 7.44 -51.93 -0.39 0.50 16 42 H 0.09 0.52 7.80 -51.93 -0.41 0.12 16 43 H 0.12 0.69 8.04 -52.48 -0.42 0.26 16 44 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.13 1.47 7.38 -52.49 -0.39 1.08 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -33.75 388.63 -9.27 -43.02 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.26 Total: 6.39 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.10 Total: -3.61 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.03 Total: -44.47 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.70 Total: -23.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.75 -9.27 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286658246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.483 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.99 seconds