Wall clock time and date at job start Wed Apr 1 2020 00:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47174 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46742 * 120.00173 * 3 2 1 7 7 C 1.37876 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99306 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47227 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46701 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46794 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00225 * 180.02562 * 12 11 10 14 14 O 1.21344 * 119.99498 * 359.97438 * 13 12 11 15 15 C 1.49444 * 120.00048 * 180.02562 * 13 12 11 16 16 O 1.21352 * 120.00337 * 5.31579 * 15 13 12 17 17 N 1.34783 * 120.00225 * 185.31586 * 15 13 12 18 18 C 1.46502 * 119.99456 * 354.65924 * 17 15 13 19 19 C 1.53004 * 109.46599 * 275.07638 * 18 17 15 20 20 O 1.42901 * 109.47181 * 65.00785 * 19 18 17 21 21 C 1.46498 * 120.00353 * 174.65394 * 17 15 13 22 22 C 1.50693 * 109.46895 * 90.00404 * 21 17 15 23 23 C 1.38236 * 120.00533 * 89.99868 * 22 21 17 24 24 C 1.38230 * 120.00198 * 179.97438 * 23 22 21 25 25 C 1.38228 * 120.00197 * 359.97438 * 24 23 22 26 26 C 1.38230 * 120.00231 * 0.27386 * 25 24 23 27 27 C 1.38238 * 119.99895 * 359.51539 * 26 25 24 28 28 H 0.96999 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47139 * 60.00266 * 9 7 2 30 30 H 1.09003 * 109.47027 * 300.00580 * 9 7 2 31 31 H 1.08998 * 109.47264 * 60.00382 * 10 9 7 32 32 H 1.08997 * 109.46923 * 300.00127 * 10 9 7 33 33 H 1.08998 * 109.47141 * 60.00072 * 11 10 9 34 34 H 1.08997 * 109.47345 * 299.99635 * 11 10 9 35 35 H 0.97008 * 120.00185 * 0.02562 * 12 11 10 36 36 H 1.09005 * 109.47387 * 35.07352 * 18 17 15 37 37 H 1.09003 * 109.47269 * 155.07909 * 18 17 15 38 38 H 1.09007 * 109.46843 * 185.00111 * 19 18 17 39 39 H 1.09000 * 109.47496 * 304.99629 * 19 18 17 40 40 H 0.96700 * 113.99706 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.46766 * 330.00247 * 21 17 15 42 42 H 1.08994 * 109.46860 * 210.00116 * 21 17 15 43 43 H 1.08006 * 119.99388 * 359.97438 * 23 22 21 44 44 H 1.08005 * 119.99662 * 180.02562 * 24 23 22 45 45 H 1.08007 * 120.00016 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00705 * 179.72322 * 26 25 24 47 47 H 1.07999 * 120.00293 * 180.27759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4323 -6.1005 -0.0006 13 6 1.9832 -7.3713 -0.0015 14 8 0.7901 -7.5930 -0.0024 15 6 2.9543 -8.5071 -0.0003 16 8 4.1439 -8.2883 0.0989 17 7 2.5092 -9.7746 -0.1094 18 6 1.0698 -10.0477 -0.1112 19 6 0.5682 -10.1491 1.3307 20 8 0.7115 -8.8817 1.9751 21 6 3.4645 -10.8791 -0.2261 22 6 3.8148 -11.3876 1.1485 23 6 3.0682 -12.3996 1.7222 24 6 3.3899 -12.8664 2.9829 25 6 4.4586 -12.3215 3.6698 26 6 5.2021 -11.3060 3.0983 27 6 4.8831 -10.8421 1.8357 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6042 -0.8905 33 1 0.8540 -5.0445 -0.8914 34 1 0.8534 -5.0451 0.8886 35 1 3.3861 -5.9233 0.0005 36 1 0.5471 -9.2388 -0.6218 37 1 0.8790 -10.9876 -0.6293 38 1 -0.4825 -10.4396 1.3302 39 1 1.1518 -10.8975 1.8667 40 1 0.4128 -8.8722 2.8948 41 1 4.3677 -10.5270 -0.7244 42 1 3.0186 -11.6850 -0.8089 43 1 2.2334 -12.8256 1.1854 44 1 2.8067 -13.6574 3.4310 45 1 4.7102 -12.6865 4.6547 46 1 6.0344 -10.8772 3.6367 47 1 5.4668 -10.0518 1.3873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286658246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:41 Heat of formation + Delta-G solvation = -110.901098 kcal Electronic energy + Delta-G solvation = -28756.335650 eV Core-core repulsion = 24710.498795 eV Total energy + Delta-G solvation = -4045.836856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.44 seconds Orbital eigenvalues (eV) -41.90132 -40.25794 -39.28438 -38.18541 -36.97399 -36.30748 -35.12339 -32.99277 -32.83302 -31.80451 -30.17415 -29.01749 -27.74394 -25.62928 -24.26925 -23.51206 -23.29359 -22.31700 -22.16891 -20.68946 -18.78224 -18.58335 -18.26626 -17.95368 -17.75915 -17.09895 -16.65780 -16.40260 -16.36066 -16.19859 -15.85426 -15.77622 -15.40339 -14.96659 -14.68871 -14.31655 -14.26639 -14.23440 -13.98691 -13.76672 -13.51213 -13.44066 -13.33630 -12.93218 -12.71578 -12.59621 -12.53383 -12.42221 -12.17370 -12.02928 -11.84635 -11.67594 -11.52084 -11.23098 -10.81323 -10.54144 -10.32069 -10.15192 -9.90204 -9.79261 -9.56088 -8.19039 -6.30134 0.31121 0.50591 0.52495 1.41345 1.44609 1.45827 1.52597 2.28010 2.41187 2.50526 2.95451 3.14381 3.40792 3.55473 3.82211 3.90563 4.13433 4.15572 4.20911 4.25065 4.26754 4.29763 4.37523 4.55004 4.57303 4.60599 4.62567 4.69809 4.75909 4.89021 4.94012 5.07734 5.09484 5.15419 5.15899 5.31891 5.46152 5.52794 5.55467 5.62775 5.66506 5.71174 5.84449 5.97748 6.11244 6.23036 6.33172 6.77638 6.86307 6.95597 7.11031 7.38929 8.92712 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020609 B = 0.002165 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.317248 B =12931.572181 C =13412.138287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.105 4.105 11 C 0.136 3.864 12 N -0.700 5.700 13 C 0.503 3.497 14 O -0.505 6.505 15 C 0.517 3.483 16 O -0.547 6.547 17 N -0.568 5.568 18 C 0.082 3.918 19 C 0.063 3.937 20 O -0.580 6.580 21 C 0.149 3.851 22 C -0.115 4.115 23 C -0.104 4.104 24 C -0.128 4.128 25 C -0.123 4.123 26 C -0.139 4.139 27 C -0.116 4.116 28 H 0.264 0.736 29 H -0.003 1.003 30 H -0.005 1.005 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.412 0.588 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.380 0.620 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.126 0.874 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -32.383 3.430 33.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.013 3.987 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.380 6.380 15 C 0.300 3.700 16 O -0.425 6.425 17 N -0.300 5.300 18 C -0.039 4.039 19 C -0.015 4.015 20 O -0.386 6.386 21 C 0.028 3.972 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.146 4.146 25 C -0.141 4.141 26 C -0.157 4.157 27 C -0.134 4.134 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.227 0.773 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.144 0.856 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.215 -32.163 2.861 32.708 hybrid contribution 0.438 1.210 0.780 1.505 sum 5.653 -30.953 3.641 31.675 Atomic orbital electron populations 1.70090 1.07792 1.27865 1.51539 1.25991 0.95785 1.03409 0.94762 0.85489 0.78234 0.78064 0.79187 1.19123 1.20934 1.19213 1.21642 0.93650 0.92170 1.50682 0.91906 1.18912 0.94282 0.92547 0.95331 1.21628 0.98612 0.92215 1.01858 1.21318 0.91454 0.84498 1.01441 1.45857 1.11649 1.04826 1.72965 1.20124 0.88869 0.84302 0.78329 1.90611 1.16608 1.83628 1.47201 1.20098 0.87750 0.84904 0.77242 1.90698 1.17345 1.84911 1.49573 1.47803 1.08628 1.04309 1.69236 1.22603 0.78291 1.05608 0.97431 1.22639 1.00061 0.85342 0.93478 1.86693 1.88233 1.33448 1.30266 1.20732 0.93835 0.88824 0.93834 1.20253 0.96372 0.97593 0.97427 1.21290 0.99236 0.95954 0.95796 1.21466 0.97553 1.00581 0.95022 1.21473 0.95705 0.96254 1.00661 1.21376 1.00802 0.97963 0.95517 1.21268 0.97678 0.98988 0.95500 0.92753 0.98501 0.98683 0.91939 0.91649 0.92017 0.92417 0.75177 0.87623 0.85569 0.91452 0.92825 0.77268 0.89905 0.85449 0.83554 0.83656 0.84388 0.85643 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.11 -4.28 5.27 30.60 0.16 -4.11 16 11 C 0.14 4.96 5.67 86.38 0.49 5.45 16 12 N -0.70 -22.57 5.55 -464.42 -2.58 -25.15 16 13 C 0.50 15.92 7.03 87.27 0.61 16.54 16 14 O -0.50 -16.96 10.93 19.30 0.21 -16.75 16 15 C 0.52 14.57 7.30 87.27 0.64 15.20 16 16 O -0.55 -17.26 15.30 -3.25 -0.05 -17.31 16 17 N -0.57 -11.60 2.46 -827.74 -2.04 -13.64 16 18 C 0.08 1.37 5.74 86.38 0.50 1.87 16 19 C 0.06 1.04 7.35 71.98 0.53 1.57 16 20 O -0.58 -13.88 10.05 -126.45 -1.27 -15.15 16 21 C 0.15 2.32 5.53 85.63 0.47 2.79 16 22 C -0.12 -1.96 5.36 -19.87 -0.11 -2.06 16 23 C -0.10 -1.29 7.79 22.27 0.17 -1.12 16 24 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 25 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.14 -2.52 10.05 22.27 0.22 -2.30 16 27 C -0.12 -2.43 9.56 22.27 0.21 -2.21 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.41 12.39 7.96 -92.70 -0.74 11.66 16 36 H 0.11 2.41 5.15 -6.80 -0.04 2.38 16 37 H 0.13 1.02 7.84 -2.39 -0.02 1.00 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 39 H 0.05 0.77 5.96 -2.39 -0.01 0.75 16 40 H 0.38 6.56 9.12 -74.06 -0.68 5.89 16 41 H 0.08 1.51 7.44 -2.39 -0.02 1.49 16 42 H 0.13 1.00 7.80 -2.39 -0.02 0.98 16 43 H 0.15 0.97 8.04 -2.91 -0.02 0.94 16 44 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 47 H 0.11 2.64 7.38 -2.91 -0.02 2.62 16 Total: -1.00 -74.42 388.63 1.34 -73.08 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.44 Total: 25.34 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.20 Total: -0.03 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -4.33 Total: -95.68 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.11 Total: -49.21 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -74.42 1.34 -73.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286658246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.826 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.44 seconds