Wall clock time and date at job start Tue Mar 31 2020 23:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48501 * 109.46975 * 269.99128 * 3 2 1 5 5 H 1.48500 * 109.47156 * 29.99535 * 3 2 1 6 6 H 1.48507 * 109.47057 * 149.99567 * 3 2 1 7 7 C 1.39902 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00008 * 163.17586 * 7 2 1 9 9 C 1.41155 * 119.99769 * 343.16593 * 7 2 1 10 10 C 1.40864 * 120.16879 * 334.64956 * 9 7 2 11 11 C 1.36373 * 119.83109 * 180.27208 * 10 9 7 12 12 C 1.39484 * 120.16873 * 359.51522 * 11 10 9 13 13 N 1.39236 * 119.83580 * 180.21631 * 12 11 10 14 14 C 1.34776 * 120.00263 * 145.76743 * 13 12 11 15 15 O 1.21581 * 119.99786 * 354.85091 * 14 13 12 16 16 N 1.34776 * 120.00150 * 174.85228 * 14 13 12 17 17 C 1.46502 * 120.00286 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47294 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47301 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.54482 * 65.00048 * 19 18 17 21 21 C 1.53184 * 109.54547 * 304.82591 * 19 18 17 22 22 C 1.53100 * 109.16049 * 183.23879 * 21 19 18 23 23 O 1.42906 * 109.48724 * 57.47270 * 22 21 19 24 24 C 1.42904 * 114.10020 * 298.89111 * 23 22 21 25 25 C 1.53092 * 109.41440 * 61.15395 * 24 23 22 26 26 C 1.39479 * 120.32735 * 0.46022 * 12 11 10 27 27 C 1.36374 * 120.17607 * 359.79608 * 26 12 11 28 28 H 0.96998 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.08521 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.91432 * 179.72318 * 11 10 9 31 31 H 0.97004 * 119.99807 * 325.76282 * 13 12 11 32 32 H 0.97003 * 119.99641 * 359.97438 * 16 14 13 33 33 H 1.09003 * 109.46466 * 300.00016 * 17 16 14 34 34 H 1.08999 * 109.47164 * 59.99448 * 17 16 14 35 35 H 1.08994 * 109.47557 * 299.99893 * 18 17 16 36 36 H 1.09007 * 109.47012 * 59.99942 * 18 17 16 37 37 H 0.96698 * 114.00094 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.52103 * 303.05647 * 21 19 18 39 39 H 1.08996 * 109.52413 * 63.23860 * 21 19 18 40 40 H 1.08992 * 109.40678 * 297.49436 * 22 21 19 41 41 H 1.09001 * 109.49250 * 177.50651 * 22 21 19 42 42 H 1.09000 * 109.47809 * 301.17727 * 24 23 22 43 43 H 1.08992 * 109.49405 * 181.14390 * 24 23 22 44 44 H 1.09001 * 109.52516 * 182.48910 * 25 24 23 45 45 H 1.08993 * 109.57359 * 62.33284 * 25 24 23 46 46 H 1.08004 * 119.91396 * 179.77620 * 26 12 11 47 47 H 1.07992 * 120.09147 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4402 2.6527 0.6999 6 1 3.5403 1.4402 0.7002 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2317 -0.2701 9 6 1.3478 -2.4076 0.3551 10 6 0.2147 -2.3696 1.1911 11 6 -0.4147 -3.5298 1.5338 12 6 0.0547 -4.7512 1.0506 13 7 -0.5960 -5.9311 1.4013 14 6 -0.6670 -6.9489 0.5206 15 8 -0.2463 -6.8042 -0.6108 16 7 -1.2045 -8.1270 0.8942 17 6 -1.2812 -9.2336 -0.0628 18 6 -1.9280 -10.4459 0.6100 19 6 -2.0087 -11.6012 -0.3897 20 8 -0.6892 -12.0235 -0.7399 21 6 -2.7497 -11.1392 -1.6483 22 6 -2.8965 -12.3229 -2.6080 23 8 -3.5867 -13.3873 -1.9501 24 6 -2.9152 -13.8914 -0.7938 25 6 -2.7710 -12.7713 0.2397 26 6 1.1758 -4.7968 0.2220 27 6 1.8189 -3.6454 -0.1252 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1518 -1.4244 1.5636 30 1 -1.2809 -3.5026 2.1782 31 1 -0.9981 -6.0206 2.2795 32 1 -1.5399 -8.2425 1.7971 33 1 -1.8813 -8.9306 -0.9210 34 1 -0.2772 -9.4960 -0.3961 35 1 -1.3277 -10.7486 1.4679 36 1 -2.9321 -10.1836 0.9435 37 1 -0.6650 -12.7547 -1.3722 38 1 -3.7378 -10.7694 -1.3741 39 1 -2.1836 -10.3436 -2.1328 40 1 -1.9082 -12.6653 -2.9146 41 1 -3.4619 -12.0111 -3.4863 42 1 -1.9270 -14.2543 -1.0767 43 1 -3.4938 -14.7095 -0.3649 44 1 -2.2201 -13.1419 1.1042 45 1 -3.7590 -12.4353 0.5542 46 1 1.5357 -5.7465 -0.1455 47 1 2.6870 -3.6823 -0.7665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286946146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:26 Heat of formation + Delta-G solvation = -110.053580 kcal Electronic energy + Delta-G solvation = -27988.611623 eV Core-core repulsion = 23942.811519 eV Total energy + Delta-G solvation = -4045.800104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -40.69531 -39.76211 -37.54098 -37.01896 -35.09697 -34.26315 -33.07725 -32.62859 -31.70628 -30.00457 -29.46558 -28.59816 -25.63648 -24.56074 -24.05258 -22.26332 -21.50709 -20.79935 -20.38771 -19.91166 -17.92707 -17.89358 -17.22416 -16.70162 -16.45671 -16.20769 -15.46269 -15.30975 -15.18513 -14.98632 -14.88577 -14.47979 -14.04666 -13.86381 -13.79406 -12.96886 -12.79943 -12.73900 -12.56847 -12.32405 -12.09973 -12.06862 -12.03240 -11.80079 -11.68706 -11.48077 -11.23763 -11.07449 -10.95522 -10.82578 -10.68995 -10.21865 -10.04766 -9.95799 -9.54796 -9.46189 -9.13691 -8.88967 -8.79573 -7.48150 -6.90024 -6.68362 -4.23946 2.71521 3.04456 3.09456 3.12763 3.15706 3.22042 3.37247 3.74337 3.78741 3.96975 4.10540 4.23518 4.27437 4.43688 4.60981 4.68828 4.73016 4.77238 4.93803 4.98653 5.12126 5.16110 5.19397 5.33752 5.44058 5.52238 5.62244 5.67786 5.75158 5.89114 5.98781 6.24767 6.47943 6.65401 6.67838 6.83954 6.88221 7.09722 7.17136 7.18987 7.33972 7.43202 7.66922 7.93721 8.03134 8.10791 8.34248 8.55725 8.65773 8.94172 8.98043 9.18534 10.23437 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.001768 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.322782 B =15834.672933 C =15988.470716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.152 4.152 11 C -0.116 4.116 12 C 0.014 3.986 13 N -0.667 5.667 14 C 0.693 3.307 15 O -0.578 6.578 16 N -0.755 5.755 17 C 0.142 3.858 18 C -0.116 4.116 19 C 0.138 3.862 20 O -0.551 6.551 21 C -0.189 4.189 22 C 0.056 3.944 23 O -0.382 6.382 24 C 0.056 3.944 25 C -0.182 4.182 26 C -0.077 4.077 27 C -0.214 4.214 28 H 0.280 0.720 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.390 0.610 32 H 0.391 0.609 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.371 0.629 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 -23.493 2.553 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.172 4.172 11 C -0.137 4.137 12 C -0.079 4.079 13 N -0.313 5.313 14 C 0.394 3.606 15 O -0.454 6.454 16 N -0.412 5.412 17 C 0.018 3.982 18 C -0.153 4.153 19 C 0.097 3.903 20 O -0.358 6.358 21 C -0.227 4.227 22 C -0.021 4.021 23 O -0.301 6.301 24 C -0.021 4.021 25 C -0.220 4.220 26 C -0.097 4.097 27 C -0.234 4.234 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.223 0.777 32 H 0.223 0.777 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.220 0.780 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.119 0.881 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.833 -22.810 1.819 24.186 hybrid contribution -0.106 0.342 0.532 0.641 sum -7.939 -22.467 2.351 23.944 Atomic orbital electron populations 1.69849 1.07530 1.29082 1.35628 1.25913 0.94736 1.01274 0.92400 0.86326 0.80607 0.80666 0.79186 1.19553 1.20167 1.18496 1.19525 0.97753 0.91157 1.40402 0.90451 1.17653 0.91426 0.92136 0.88751 1.20873 0.99309 0.96245 1.00786 1.20196 0.99250 0.91692 1.02530 1.16961 0.97459 0.83232 1.10208 1.42117 1.59124 1.14041 1.16048 1.16015 0.79473 0.80270 0.84863 1.90923 1.53544 1.82059 1.18902 1.45112 1.68014 1.12335 1.15734 1.21118 1.01683 0.84021 0.91394 1.21753 1.02020 0.93351 0.98214 1.21087 0.82512 0.93115 0.93576 1.86635 1.26926 1.55899 1.66354 1.22999 1.02605 0.99758 0.97299 1.22652 0.97347 0.86746 0.95354 1.87979 1.48522 1.51861 1.41714 1.22607 0.97589 0.95907 0.85966 1.22878 1.02247 0.97026 0.99825 1.20259 0.93722 0.97716 0.98045 1.20650 1.03727 0.92628 1.06388 0.90962 0.86113 0.89271 0.77700 0.77662 0.91739 0.90974 0.90282 0.89956 0.78043 0.89743 0.88938 0.92966 0.88153 0.93041 0.88372 0.89793 0.89822 0.88062 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.85 10.95 55.55 0.61 -20.25 16 2 C 0.07 1.88 5.15 -17.34 -0.09 1.80 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.40 9.04 -37.85 -0.34 -12.75 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 10 C -0.15 -3.98 8.63 -39.26 -0.34 -4.32 16 11 C -0.12 -2.72 9.89 -39.79 -0.39 -3.11 16 12 C 0.01 0.33 6.27 -83.57 -0.52 -0.20 16 13 N -0.67 -12.25 5.31 -14.10 -0.07 -12.32 16 14 C 0.69 12.90 8.28 -86.92 -0.72 12.18 16 15 O -0.58 -13.47 14.07 5.29 0.07 -13.40 16 16 N -0.75 -9.85 5.56 -65.23 -0.36 -10.21 16 17 C 0.14 1.68 5.09 -4.05 -0.02 1.66 16 18 C -0.12 -0.93 4.63 -26.74 -0.12 -1.05 16 19 C 0.14 1.02 0.80 -90.43 -0.07 0.95 16 20 O -0.55 -4.66 12.50 -35.23 -0.44 -5.10 16 21 C -0.19 -1.40 4.55 -26.58 -0.12 -1.52 16 22 C 0.06 0.37 6.59 37.21 0.25 0.62 16 23 O -0.38 -3.03 10.77 -35.23 -0.38 -3.41 16 24 C 0.06 0.32 6.59 37.21 0.25 0.56 16 25 C -0.18 -1.06 5.15 -26.59 -0.14 -1.19 16 26 C -0.08 -1.93 8.57 -39.79 -0.34 -2.27 16 27 C -0.21 -5.60 9.74 -39.26 -0.38 -5.98 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.12 3.22 6.18 -52.48 -0.32 2.90 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.39 5.54 8.83 -40.82 -0.36 5.18 16 32 H 0.39 3.73 8.49 -40.82 -0.35 3.38 16 33 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 34 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.37 2.09 5.97 45.56 0.27 2.36 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.79 6.56 -51.93 -0.34 0.45 16 40 H 0.05 0.29 6.93 -51.93 -0.36 -0.07 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.23 6.93 -51.93 -0.36 -0.13 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 2.52 6.47 -52.48 -0.34 2.19 16 47 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -33.62 374.53 -9.92 -43.55 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -6.25 Total: 14.05 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.71 Total: -12.41 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.17 Total: -42.78 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.75 Total: -21.90 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.62 -9.92 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286946146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.506 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds