Wall clock time and date at job start Tue Mar 31 2020 23:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48501 * 109.46975 * 269.99128 * 3 2 1 5 5 H 1.48500 * 109.47156 * 29.99535 * 3 2 1 6 6 H 1.48507 * 109.47057 * 149.99567 * 3 2 1 7 7 C 1.39902 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00008 * 163.17586 * 7 2 1 9 9 C 1.41155 * 119.99769 * 343.16593 * 7 2 1 10 10 C 1.40864 * 120.16879 * 334.64956 * 9 7 2 11 11 C 1.36373 * 119.83109 * 180.27208 * 10 9 7 12 12 C 1.39484 * 120.16873 * 359.51522 * 11 10 9 13 13 N 1.39236 * 119.83580 * 180.21631 * 12 11 10 14 14 C 1.34776 * 120.00263 * 145.76743 * 13 12 11 15 15 O 1.21581 * 119.99786 * 354.85091 * 14 13 12 16 16 N 1.34776 * 120.00150 * 174.85228 * 14 13 12 17 17 C 1.46502 * 120.00286 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47294 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47301 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.54482 * 65.00048 * 19 18 17 21 21 C 1.53184 * 109.54547 * 304.82591 * 19 18 17 22 22 C 1.53100 * 109.16049 * 183.23879 * 21 19 18 23 23 O 1.42906 * 109.48724 * 57.47270 * 22 21 19 24 24 C 1.42904 * 114.10020 * 298.89111 * 23 22 21 25 25 C 1.53092 * 109.41440 * 61.15395 * 24 23 22 26 26 C 1.39479 * 120.32735 * 0.46022 * 12 11 10 27 27 C 1.36374 * 120.17607 * 359.79608 * 26 12 11 28 28 H 0.96998 * 120.00108 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.08521 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.91432 * 179.72318 * 11 10 9 31 31 H 0.97004 * 119.99807 * 325.76282 * 13 12 11 32 32 H 0.97003 * 119.99641 * 359.97438 * 16 14 13 33 33 H 1.09003 * 109.46466 * 300.00016 * 17 16 14 34 34 H 1.08999 * 109.47164 * 59.99448 * 17 16 14 35 35 H 1.08994 * 109.47557 * 299.99893 * 18 17 16 36 36 H 1.09007 * 109.47012 * 59.99942 * 18 17 16 37 37 H 0.96698 * 114.00094 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.52103 * 303.05647 * 21 19 18 39 39 H 1.08996 * 109.52413 * 63.23860 * 21 19 18 40 40 H 1.08992 * 109.40678 * 297.49436 * 22 21 19 41 41 H 1.09001 * 109.49250 * 177.50651 * 22 21 19 42 42 H 1.09000 * 109.47809 * 301.17727 * 24 23 22 43 43 H 1.08992 * 109.49405 * 181.14390 * 24 23 22 44 44 H 1.09001 * 109.52516 * 182.48910 * 25 24 23 45 45 H 1.08993 * 109.57359 * 62.33284 * 25 24 23 46 46 H 1.08004 * 119.91396 * 179.77620 * 26 12 11 47 47 H 1.07992 * 120.09147 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4402 2.6527 0.6999 6 1 3.5403 1.4402 0.7002 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2317 -0.2701 9 6 1.3478 -2.4076 0.3551 10 6 0.2147 -2.3696 1.1911 11 6 -0.4147 -3.5298 1.5338 12 6 0.0547 -4.7512 1.0506 13 7 -0.5960 -5.9311 1.4013 14 6 -0.6670 -6.9489 0.5206 15 8 -0.2463 -6.8042 -0.6108 16 7 -1.2045 -8.1270 0.8942 17 6 -1.2812 -9.2336 -0.0628 18 6 -1.9280 -10.4459 0.6100 19 6 -2.0087 -11.6012 -0.3897 20 8 -0.6892 -12.0235 -0.7399 21 6 -2.7497 -11.1392 -1.6483 22 6 -2.8965 -12.3229 -2.6080 23 8 -3.5867 -13.3873 -1.9501 24 6 -2.9152 -13.8914 -0.7938 25 6 -2.7710 -12.7713 0.2397 26 6 1.1758 -4.7968 0.2220 27 6 1.8189 -3.6454 -0.1252 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1518 -1.4244 1.5636 30 1 -1.2809 -3.5026 2.1782 31 1 -0.9981 -6.0206 2.2795 32 1 -1.5399 -8.2425 1.7971 33 1 -1.8813 -8.9306 -0.9210 34 1 -0.2772 -9.4960 -0.3961 35 1 -1.3277 -10.7486 1.4679 36 1 -2.9321 -10.1836 0.9435 37 1 -0.6650 -12.7547 -1.3722 38 1 -3.7378 -10.7694 -1.3741 39 1 -2.1836 -10.3436 -2.1328 40 1 -1.9082 -12.6653 -2.9146 41 1 -3.4619 -12.0111 -3.4863 42 1 -1.9270 -14.2543 -1.0767 43 1 -3.4938 -14.7095 -0.3649 44 1 -2.2201 -13.1419 1.1042 45 1 -3.7590 -12.4353 0.5542 46 1 1.5357 -5.7465 -0.1455 47 1 2.6870 -3.6823 -0.7665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286946146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:23 Heat of formation + Delta-G solvation = -134.991428 kcal Electronic energy + Delta-G solvation = -27989.693010 eV Core-core repulsion = 23942.811519 eV Total energy + Delta-G solvation = -4046.881491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.49223 -41.08016 -39.26802 -37.75839 -36.39432 -35.88023 -34.75271 -33.55080 -32.19688 -31.49725 -31.08780 -30.14356 -26.99849 -25.80910 -24.65212 -23.53063 -22.87834 -22.49868 -21.67303 -20.86401 -19.44789 -19.09887 -18.51119 -18.18674 -17.12820 -17.00637 -16.85538 -16.63984 -16.19804 -15.74495 -15.70841 -15.65646 -15.37771 -15.29623 -14.95129 -14.67325 -14.47303 -13.96994 -13.68809 -13.34539 -13.26213 -13.20507 -12.95840 -12.88723 -12.75732 -12.71110 -12.62733 -12.45520 -12.29387 -12.16115 -11.80993 -11.45228 -11.34059 -11.22064 -11.02594 -10.78628 -10.70203 -10.49234 -10.07054 -9.45889 -8.80699 -8.57812 -6.25280 0.86544 1.15169 1.40060 1.47520 1.55570 1.78091 2.20294 2.24268 2.77705 2.89935 3.20107 3.36116 3.53539 3.71885 3.74276 3.77725 3.94814 4.13077 4.16389 4.26411 4.35129 4.40257 4.50299 4.51149 4.64665 4.75189 4.77143 4.82352 4.92561 4.97725 5.01533 5.06750 5.12106 5.15803 5.17001 5.22685 5.31799 5.45641 5.49370 5.65876 5.81429 6.05046 6.12076 6.20289 6.26127 6.39487 6.67017 6.70232 6.94643 7.01635 7.18534 7.67822 8.35430 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.001768 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.322782 B =15834.672933 C =15988.470716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.074 0.926 9 C 0.072 3.928 10 C -0.169 4.169 11 C -0.113 4.113 12 C 0.029 3.971 13 N -0.658 5.658 14 C 0.690 3.310 15 O -0.628 6.628 16 N -0.729 5.729 17 C 0.144 3.856 18 C -0.107 4.107 19 C 0.137 3.863 20 O -0.569 6.569 21 C -0.187 4.187 22 C 0.055 3.945 23 O -0.400 6.400 24 C 0.051 3.949 25 C -0.174 4.174 26 C -0.089 4.089 27 C -0.232 4.232 28 H 0.289 0.711 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.414 0.586 32 H 0.413 0.587 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.382 0.618 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 -24.534 4.049 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.069 3.931 10 C -0.189 4.189 11 C -0.133 4.133 12 C -0.065 4.065 13 N -0.306 5.306 14 C 0.390 3.610 15 O -0.508 6.508 16 N -0.386 5.386 17 C 0.020 3.980 18 C -0.144 4.144 19 C 0.096 3.904 20 O -0.378 6.378 21 C -0.225 4.225 22 C -0.021 4.021 23 O -0.319 6.319 24 C -0.026 4.026 25 C -0.212 4.212 26 C -0.110 4.110 27 C -0.253 4.253 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.143 0.857 31 H 0.251 0.749 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.232 0.768 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.125 -23.925 3.374 25.827 hybrid contribution 0.219 0.481 0.056 0.532 sum -8.906 -23.444 3.431 25.312 Atomic orbital electron populations 1.69886 1.08924 1.30603 1.35762 1.26769 0.95561 1.04483 0.91259 0.85174 0.79114 0.75811 0.79390 1.18985 1.18716 1.18273 1.19760 0.97952 0.92398 1.42474 0.90808 1.17986 0.92555 0.92723 0.89795 1.20898 0.99674 0.96970 1.01374 1.20457 0.99726 0.90774 1.02339 1.16988 0.96418 0.84872 1.08255 1.41872 1.58778 1.12670 1.17273 1.16235 0.79285 0.81345 0.84102 1.90900 1.55660 1.83088 1.21191 1.44896 1.66120 1.10585 1.17030 1.21171 1.00551 0.84841 0.91451 1.21744 1.02865 0.91611 0.98214 1.21131 0.82351 0.93551 0.93366 1.86608 1.27666 1.56628 1.66867 1.22954 1.02302 0.99614 0.97620 1.22679 0.97894 0.86364 0.95204 1.87957 1.49350 1.52031 1.42557 1.22784 0.98340 0.96115 0.85332 1.22810 1.02186 0.96228 0.99966 1.20344 0.94681 0.97053 0.98875 1.20768 1.04290 0.93103 1.07093 0.90038 0.87022 0.85706 0.74880 0.75061 0.92703 0.93493 0.89467 0.87794 0.76802 0.89706 0.90631 0.92007 0.87923 0.91966 0.87106 0.88851 0.89418 0.88459 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.77 10.95 21.82 0.24 -43.53 16 2 C 0.03 1.74 5.15 85.24 0.44 2.18 16 3 Si 0.98 38.81 29.59 68.60 2.03 40.84 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.73 9.04 23.39 0.21 -27.52 16 8 H 0.07 4.00 7.90 -2.91 -0.02 3.97 16 9 C 0.07 4.08 5.57 -21.28 -0.12 3.96 16 10 C -0.17 -8.99 8.63 22.48 0.19 -8.79 16 11 C -0.11 -5.17 9.89 22.13 0.22 -4.95 16 12 C 0.03 1.31 6.27 38.57 0.24 1.55 16 13 N -0.66 -22.96 5.31 -316.79 -1.68 -24.64 16 14 C 0.69 24.95 8.28 179.05 1.48 26.44 16 15 O -0.63 -29.58 14.07 -3.97 -0.06 -29.64 16 16 N -0.73 -17.62 5.56 -478.55 -2.66 -20.28 16 17 C 0.14 3.26 5.09 86.38 0.44 3.70 16 18 C -0.11 -1.46 4.63 30.59 0.14 -1.32 16 19 C 0.14 1.78 0.80 -10.67 -0.01 1.77 16 20 O -0.57 -8.90 12.50 -148.98 -1.86 -10.77 16 21 C -0.19 -2.61 4.55 30.69 0.14 -2.47 16 22 C 0.06 0.68 6.59 72.02 0.47 1.16 16 23 O -0.40 -5.70 10.77 -148.98 -1.60 -7.31 16 24 C 0.05 0.46 6.59 72.01 0.47 0.93 16 25 C -0.17 -1.58 5.15 30.68 0.16 -1.42 16 26 C -0.09 -4.55 8.57 22.13 0.19 -4.36 16 27 C -0.23 -12.66 9.74 22.48 0.22 -12.44 16 28 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 29 H 0.11 6.07 6.18 -2.91 -0.02 6.05 16 30 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.41 10.47 8.83 -92.71 -0.82 9.65 16 32 H 0.41 6.51 8.49 -92.71 -0.79 5.72 16 33 H 0.05 1.38 6.43 -2.39 -0.02 1.36 16 34 H 0.05 1.33 7.83 -2.39 -0.02 1.31 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.38 3.81 5.97 -74.06 -0.44 3.37 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 1.31 6.56 -2.39 -0.02 1.29 16 40 H 0.06 0.62 6.93 -2.39 -0.02 0.61 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 0.42 6.93 -2.39 -0.02 0.41 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 4.99 6.47 -2.91 -0.02 4.97 16 47 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -75.16 374.53 -1.72 -76.88 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -1.02 Total: 40.01 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.90 Total: -21.58 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -4.10 Total: -88.45 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -3.52 Total: -47.71 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -75.16 -1.72 -76.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286946146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.112 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds