Wall clock time and date at job start Tue Mar 31 2020 19:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46850 * 2 1 4 4 C 1.50702 * 109.46971 * 240.00081 * 2 1 3 5 5 H 1.08006 * 119.99667 * 239.99522 * 4 2 1 6 6 C 1.37869 * 120.00391 * 59.99788 * 4 2 1 7 7 N 1.31519 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00456 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47330 * 89.99677 * 8 6 4 10 10 H 1.48503 * 109.47551 * 210.00370 * 8 6 4 11 11 H 1.48507 * 109.46757 * 330.00018 * 8 6 4 12 12 N 1.46901 * 109.47243 * 120.00018 * 2 1 3 13 13 C 1.46893 * 111.00055 * 58.95334 * 12 2 1 14 14 C 1.38587 * 110.99668 * 294.99773 * 12 2 1 15 15 N 1.31211 * 126.47560 * 359.97438 * 14 12 2 16 16 N 1.28528 * 109.86231 * 180.02562 * 15 14 12 17 17 C 1.30294 * 110.05505 * 359.97438 * 16 15 14 18 18 C 1.50696 * 126.35210 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47223 * 90.02190 * 18 17 16 20 20 C 1.35956 * 116.99661 * 180.02562 * 19 18 17 21 21 C 1.38663 * 120.06582 * 0.02562 * 20 19 18 22 22 C 1.38177 * 119.96783 * 180.30405 * 21 20 19 23 23 C 1.38262 * 120.09816 * 359.43674 * 22 21 20 24 24 C 1.38262 * 120.12232 * 0.56250 * 23 22 21 25 25 C 1.38334 * 120.03067 * 359.72038 * 24 23 22 26 26 F 1.35102 * 120.04670 * 180.02562 * 25 24 23 27 27 N 1.36461 * 126.46970 * 180.28848 * 14 12 2 28 28 C 1.46498 * 127.13610 * 359.97438 * 27 14 12 29 29 H 1.08995 * 109.47024 * 299.99920 * 1 2 3 30 30 H 1.08995 * 109.47449 * 60.00278 * 1 2 3 31 31 H 1.08999 * 109.46850 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99925 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47143 * 296.04303 * 13 12 2 34 34 H 1.09001 * 109.47635 * 56.04724 * 13 12 2 35 35 H 1.09007 * 109.47122 * 176.04681 * 13 12 2 36 36 H 1.09003 * 109.46956 * 330.02214 * 18 17 16 37 37 H 1.08995 * 109.47090 * 210.02734 * 18 17 16 38 38 H 1.08002 * 120.01219 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.95048 * 179.69888 * 22 21 20 40 40 H 1.08001 * 119.94230 * 180.28487 * 23 22 21 41 41 H 1.07998 * 119.98514 * 179.74420 * 24 23 22 42 42 H 1.08997 * 109.47142 * 270.19354 * 28 27 14 43 43 H 1.08998 * 109.47113 * 30.20554 * 28 27 14 44 44 H 1.09005 * 109.46389 * 150.20069 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6698 -0.0022 2.3490 15 7 0.9942 1.1211 2.4093 16 7 0.8504 1.4789 3.6353 17 6 1.4204 0.6122 4.4236 18 6 1.4723 0.6722 5.9285 19 8 0.3373 -0.0053 6.4716 20 6 0.2313 -0.0432 7.8265 21 6 1.1988 0.5594 8.6162 22 6 1.0924 0.5142 9.9931 23 6 0.0163 -0.1210 10.5849 24 6 -0.9507 -0.7231 9.8013 25 6 -0.8463 -0.6861 8.4224 26 9 -1.7913 -1.2739 7.6564 27 7 1.9678 -0.3592 3.6320 28 6 2.7159 -1.5400 4.0703 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1613 -3.4844 33 1 0.4420 -2.0730 1.3348 34 1 1.8167 -2.5950 0.3319 35 1 1.9618 -2.5868 2.1059 36 1 1.4627 1.7133 6.2511 37 1 2.3851 0.1913 6.2800 38 1 2.0376 1.0598 8.1552 39 1 1.8487 0.9794 10.6079 40 1 -0.0668 -0.1508 11.6612 41 1 -1.7882 -1.2222 10.2659 42 1 2.0258 -2.3684 4.2305 43 1 3.4421 -1.8147 3.3053 44 1 3.2362 -1.3154 5.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290247747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:43 Heat of formation + Delta-G solvation = 55.906635 kcal Electronic energy + Delta-G solvation = -28538.600744 eV Core-core repulsion = 24408.829661 eV Total energy + Delta-G solvation = -4129.771083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 33.25 seconds Orbital eigenvalues (eV) -48.97920 -42.63517 -40.30513 -37.86741 -37.35521 -34.80627 -32.88143 -31.38244 -31.06717 -29.78023 -28.77148 -27.85653 -26.93027 -25.21326 -25.00980 -23.17140 -22.79184 -21.85604 -20.58283 -19.55260 -18.86247 -17.48741 -17.09051 -16.71236 -16.44260 -16.06213 -16.01501 -15.61609 -15.29999 -15.17884 -14.86084 -14.70836 -14.53628 -14.00275 -13.50962 -13.29091 -13.19400 -12.99894 -12.84707 -12.68350 -12.38103 -12.04626 -11.59581 -11.56806 -11.46867 -11.43668 -11.18022 -10.95876 -10.78185 -10.62784 -10.25437 -10.10832 -9.87784 -9.80835 -9.34061 -9.18334 -8.92651 -8.55598 -8.43700 -7.48070 -6.06066 -4.13858 0.73658 0.87732 1.77448 2.51894 2.86926 3.19565 3.27408 3.34410 3.36801 3.44958 3.90633 4.17935 4.29779 4.38730 4.44136 4.54736 4.57818 4.62503 4.76784 4.83605 4.93133 5.07447 5.15129 5.25326 5.33109 5.55338 5.56907 5.65582 5.68266 5.78336 5.96690 5.98033 6.02112 6.23977 6.25760 6.41027 6.72178 6.85449 6.94399 7.05109 7.17331 7.39490 7.58709 7.69837 7.92417 8.24201 8.38235 8.87030 9.21778 9.50784 11.00310 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.002343 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.608283 B =11949.926449 C =12016.917001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.228 3.772 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.450 5.450 13 C 0.029 3.971 14 C 0.399 3.601 15 N -0.312 5.312 16 N -0.252 5.252 17 C 0.127 3.873 18 C 0.164 3.836 19 O -0.301 6.301 20 C 0.104 3.896 21 C -0.185 4.185 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.069 3.931 26 F -0.131 7.131 27 N -0.485 5.485 28 C 0.078 3.922 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.022 0.978 32 H 0.263 0.737 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -4.881 26.229 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.124 3.876 3 H 0.074 0.926 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.173 5.173 13 C -0.118 4.118 14 C 0.044 3.956 15 N -0.158 5.158 16 N -0.095 5.095 17 C -0.139 4.139 18 C 0.087 3.913 19 O -0.213 6.213 20 C 0.057 3.943 21 C -0.203 4.203 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.135 4.135 25 C 0.049 3.951 26 F -0.109 7.109 27 N -0.183 5.183 28 C -0.065 4.065 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.955 -3.701 25.383 25.726 hybrid contribution 0.349 -1.632 -0.553 1.758 sum 2.304 -5.333 24.830 25.501 Atomic orbital electron populations 1.22418 0.98942 0.99105 1.02716 1.19427 0.91354 0.94829 0.82022 0.92573 1.21005 1.31983 1.13053 0.89432 0.91779 1.24901 0.95004 0.95036 0.98969 1.69922 1.35984 1.22429 1.23725 0.86461 0.79127 0.79246 0.82334 1.20683 1.21137 1.19857 1.59307 1.55368 1.03287 0.99339 1.22478 0.98539 0.87740 1.03066 1.23386 0.93826 0.94408 0.83968 1.74942 1.18040 1.12495 1.10300 1.73948 1.15916 1.22657 0.96959 1.23436 1.05359 0.91108 0.93989 1.20598 0.87534 0.98579 0.84589 1.86260 1.45670 1.72628 1.16751 1.19042 0.94737 0.97314 0.83228 1.21224 1.00140 1.04267 0.94705 1.21031 0.97926 0.97879 0.93845 1.20942 0.94415 0.99458 1.00218 1.21053 1.00921 1.01002 0.90566 1.17058 0.88121 1.01144 0.88735 1.91533 1.62309 1.81772 1.75309 1.45990 1.44556 1.21437 1.06281 1.22062 0.96687 0.85798 1.01941 0.94410 0.88919 0.95863 0.92684 0.94459 0.88385 0.93190 0.88286 0.90271 0.84278 0.84938 0.84840 0.84058 0.90487 0.88445 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 8.26 37.16 0.31 -4.12 16 2 C 0.23 5.84 2.03 -68.86 -0.14 5.70 16 3 H 0.06 1.64 7.95 -51.93 -0.41 1.23 16 4 C -0.52 -13.73 7.88 -34.44 -0.27 -14.00 16 5 H 0.06 1.65 6.77 -52.48 -0.36 1.29 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 N -0.45 -9.76 4.80 -176.08 -0.85 -10.60 16 13 C 0.03 0.53 8.60 60.06 0.52 1.05 16 14 C 0.40 8.38 6.75 -318.86 -2.15 6.23 16 15 N -0.31 -7.28 9.32 30.32 0.28 -7.00 16 16 N -0.25 -5.28 12.18 32.99 0.40 -4.88 16 17 C 0.13 2.13 7.70 -154.01 -1.19 0.94 16 18 C 0.16 1.90 5.11 36.00 0.18 2.09 16 19 O -0.30 -4.06 9.99 -19.60 -0.20 -4.25 16 20 C 0.10 1.15 6.69 -39.18 -0.26 0.88 16 21 C -0.18 -1.46 9.04 -39.45 -0.36 -1.81 16 22 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 23 C -0.13 -0.82 10.04 -39.56 -0.40 -1.22 16 24 C -0.12 -0.93 10.02 -39.54 -0.40 -1.33 16 25 C 0.07 0.78 7.31 -39.30 -0.29 0.49 16 26 F -0.13 -1.78 17.11 2.25 0.04 -1.74 16 27 N -0.48 -8.04 3.21 -121.46 -0.39 -8.43 16 28 C 0.08 0.87 9.34 59.85 0.56 1.43 16 29 H 0.04 0.96 5.88 -51.93 -0.31 0.66 16 30 H 0.09 2.59 6.07 -51.93 -0.32 2.28 16 31 H 0.02 0.55 6.47 -51.93 -0.34 0.22 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.04 0.71 6.51 -51.93 -0.34 0.38 16 34 H 0.10 1.84 6.42 -51.93 -0.33 1.50 16 35 H 0.05 0.73 5.43 -51.92 -0.28 0.44 16 36 H 0.10 0.99 7.66 -51.93 -0.40 0.59 16 37 H 0.08 0.64 6.78 -51.93 -0.35 0.29 16 38 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 39 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 43 H 0.10 1.07 7.60 -51.93 -0.39 0.67 16 44 H 0.08 0.65 7.25 -51.93 -0.38 0.28 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -33.85 360.31 -9.39 -43.24 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.34 Total: -0.05 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.37 Total: -2.99 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.08 Total: -55.44 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.85 -9.39 -43.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290247747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.142 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.25 seconds