Wall clock time and date at job start Tue Mar 31 2020 19:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46850 * 2 1 4 4 C 1.50702 * 109.46971 * 240.00081 * 2 1 3 5 5 H 1.08006 * 119.99667 * 239.99522 * 4 2 1 6 6 C 1.37869 * 120.00391 * 59.99788 * 4 2 1 7 7 N 1.31519 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00456 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47330 * 89.99677 * 8 6 4 10 10 H 1.48503 * 109.47551 * 210.00370 * 8 6 4 11 11 H 1.48507 * 109.46757 * 330.00018 * 8 6 4 12 12 N 1.46901 * 109.47243 * 120.00018 * 2 1 3 13 13 C 1.46893 * 111.00055 * 58.95334 * 12 2 1 14 14 C 1.38587 * 110.99668 * 294.99773 * 12 2 1 15 15 N 1.31211 * 126.47560 * 359.97438 * 14 12 2 16 16 N 1.28528 * 109.86231 * 180.02562 * 15 14 12 17 17 C 1.30294 * 110.05505 * 359.97438 * 16 15 14 18 18 C 1.50696 * 126.35210 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47223 * 90.02190 * 18 17 16 20 20 C 1.35956 * 116.99661 * 180.02562 * 19 18 17 21 21 C 1.38663 * 120.06582 * 0.02562 * 20 19 18 22 22 C 1.38177 * 119.96783 * 180.30405 * 21 20 19 23 23 C 1.38262 * 120.09816 * 359.43674 * 22 21 20 24 24 C 1.38262 * 120.12232 * 0.56250 * 23 22 21 25 25 C 1.38334 * 120.03067 * 359.72038 * 24 23 22 26 26 F 1.35102 * 120.04670 * 180.02562 * 25 24 23 27 27 N 1.36461 * 126.46970 * 180.28848 * 14 12 2 28 28 C 1.46498 * 127.13610 * 359.97438 * 27 14 12 29 29 H 1.08995 * 109.47024 * 299.99920 * 1 2 3 30 30 H 1.08995 * 109.47449 * 60.00278 * 1 2 3 31 31 H 1.08999 * 109.46850 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99925 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47143 * 296.04303 * 13 12 2 34 34 H 1.09001 * 109.47635 * 56.04724 * 13 12 2 35 35 H 1.09007 * 109.47122 * 176.04681 * 13 12 2 36 36 H 1.09003 * 109.46956 * 330.02214 * 18 17 16 37 37 H 1.08995 * 109.47090 * 210.02734 * 18 17 16 38 38 H 1.08002 * 120.01219 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.95048 * 179.69888 * 22 21 20 40 40 H 1.08001 * 119.94230 * 180.28487 * 23 22 21 41 41 H 1.07998 * 119.98514 * 179.74420 * 24 23 22 42 42 H 1.08997 * 109.47142 * 270.19354 * 28 27 14 43 43 H 1.08998 * 109.47113 * 30.20554 * 28 27 14 44 44 H 1.09005 * 109.46389 * 150.20069 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4865 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6698 -0.0022 2.3490 15 7 0.9942 1.1211 2.4093 16 7 0.8504 1.4789 3.6353 17 6 1.4204 0.6122 4.4236 18 6 1.4723 0.6722 5.9285 19 8 0.3373 -0.0053 6.4716 20 6 0.2313 -0.0432 7.8265 21 6 1.1988 0.5594 8.6162 22 6 1.0924 0.5142 9.9931 23 6 0.0163 -0.1210 10.5849 24 6 -0.9507 -0.7231 9.8013 25 6 -0.8463 -0.6861 8.4224 26 9 -1.7913 -1.2739 7.6564 27 7 1.9678 -0.3592 3.6320 28 6 2.7159 -1.5400 4.0703 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1613 -3.4844 33 1 0.4420 -2.0730 1.3348 34 1 1.8167 -2.5950 0.3319 35 1 1.9618 -2.5868 2.1059 36 1 1.4627 1.7133 6.2511 37 1 2.3851 0.1913 6.2800 38 1 2.0376 1.0598 8.1552 39 1 1.8487 0.9794 10.6079 40 1 -0.0668 -0.1508 11.6612 41 1 -1.7882 -1.2222 10.2659 42 1 2.0258 -2.3684 4.2305 43 1 3.4421 -1.8147 3.3053 44 1 3.2362 -1.3154 5.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290247747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:34 Heat of formation + Delta-G solvation = 35.635883 kcal Electronic energy + Delta-G solvation = -28539.479750 eV Core-core repulsion = 24408.829661 eV Total energy + Delta-G solvation = -4130.650089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -49.84643 -44.08233 -41.05470 -39.18631 -38.47159 -36.14901 -34.82421 -32.54579 -31.65383 -30.84028 -30.51296 -29.04336 -28.04103 -27.27119 -26.53338 -23.93239 -23.55202 -23.43013 -21.82587 -21.26136 -19.61341 -18.45635 -18.29983 -17.91650 -17.59552 -17.40920 -17.32849 -17.04782 -16.50694 -16.08841 -16.01995 -15.83928 -15.48302 -15.30242 -15.03934 -14.57439 -14.30085 -14.17022 -13.87753 -13.60811 -13.45549 -13.35854 -13.13362 -12.97262 -12.67990 -12.66248 -12.51997 -12.41220 -12.25246 -12.15565 -12.11600 -12.01267 -11.44592 -11.18937 -10.94104 -10.79734 -10.52145 -9.92868 -9.25266 -9.14843 -8.13289 -6.28848 0.14656 0.26986 0.50681 1.23004 1.45470 1.46254 1.56360 1.58074 2.28628 2.41594 2.62727 2.93363 3.15674 3.17825 3.29189 3.60815 3.71591 3.81810 3.87202 4.02751 4.09973 4.24958 4.31405 4.34271 4.36566 4.44781 4.51218 4.54664 4.63384 4.71192 4.88844 4.94793 4.99513 5.04463 5.08813 5.11284 5.28507 5.35825 5.45383 5.54961 5.56900 5.68366 5.79374 5.98057 6.16923 6.21404 6.49933 6.80147 7.40027 7.72246 8.93640 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.029541 B = 0.002343 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.608283 B =11949.926449 C =12016.917001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.008 0.992 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.452 5.452 13 C 0.031 3.969 14 C 0.377 3.623 15 N -0.363 5.363 16 N -0.303 5.303 17 C 0.154 3.846 18 C 0.165 3.835 19 O -0.332 6.332 20 C 0.079 3.921 21 C -0.182 4.182 22 C -0.081 4.081 23 C -0.124 4.124 24 C -0.118 4.118 25 C 0.028 3.972 26 F -0.157 7.157 27 N -0.475 5.475 28 C 0.064 3.936 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.022 0.978 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -6.568 29.571 30.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.025 0.975 4 C -0.563 4.563 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.174 5.174 13 C -0.116 4.116 14 C 0.020 3.980 15 N -0.209 5.209 16 N -0.145 5.145 17 C -0.114 4.114 18 C 0.089 3.911 19 O -0.246 6.246 20 C 0.033 3.967 21 C -0.200 4.200 22 C -0.099 4.099 23 C -0.141 4.141 24 C -0.137 4.137 25 C 0.009 3.991 26 F -0.136 7.136 27 N -0.172 5.172 28 C -0.077 4.077 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.180 0.820 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.174 0.826 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.240 -5.413 28.774 29.584 hybrid contribution -0.352 -1.086 -1.285 1.719 sum 3.888 -6.499 27.489 28.513 Atomic orbital electron populations 1.22194 0.99467 0.98839 1.00892 1.18968 0.90714 0.92828 0.84051 0.97452 1.21306 1.31874 1.13210 0.89901 0.90776 1.25822 0.95093 0.95674 1.02287 1.70090 1.37286 1.24075 1.24346 0.85346 0.79002 0.77968 0.78024 1.19881 1.21342 1.18601 1.59189 1.55594 1.04176 0.98467 1.22564 0.97866 0.86292 1.04838 1.23237 0.94987 0.94473 0.85299 1.74771 1.19768 1.14165 1.12171 1.73838 1.18716 1.25146 0.96766 1.24436 1.01758 0.89228 0.96028 1.20906 0.89015 1.00255 0.80972 1.86160 1.46477 1.73346 1.18611 1.19285 0.96001 0.99086 0.82339 1.21541 0.99743 1.03373 0.95365 1.21513 0.98299 0.96591 0.93456 1.21404 0.93348 0.97657 1.01733 1.21342 1.01979 1.00988 0.89364 1.17626 0.88540 1.03024 0.89957 1.91454 1.63444 1.82539 1.76190 1.46233 1.44006 1.22486 1.04452 1.22556 0.96923 0.84265 1.03934 0.95150 0.91692 0.95128 0.92784 0.95926 0.88731 0.88906 0.86716 0.85760 0.82010 0.81450 0.81565 0.82645 0.88980 0.87965 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.38 8.26 71.98 0.59 -7.79 16 2 C 0.24 12.90 2.03 44.17 0.09 12.99 16 3 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16 4 C -0.52 -28.46 7.88 25.60 0.20 -28.26 16 5 H 0.07 3.79 6.77 -2.91 -0.02 3.77 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -54.44 11.32 21.45 0.24 -54.20 16 8 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 12 N -0.45 -19.95 4.80 -710.99 -3.42 -23.36 16 13 C 0.03 1.12 8.60 127.69 1.10 2.22 16 14 C 0.38 16.20 6.75 260.11 1.76 17.95 16 15 N -0.36 -17.88 9.32 -58.00 -0.54 -18.42 16 16 N -0.30 -13.17 12.18 -49.54 -0.60 -13.77 16 17 C 0.15 5.05 7.70 137.64 1.06 6.11 16 18 C 0.17 3.43 5.11 71.23 0.36 3.79 16 19 O -0.33 -8.61 9.99 -93.05 -0.93 -9.54 16 20 C 0.08 1.62 6.69 22.53 0.15 1.77 16 21 C -0.18 -2.21 9.04 22.36 0.20 -2.01 16 22 C -0.08 -0.63 10.04 22.26 0.22 -0.41 16 23 C -0.12 -1.05 10.04 22.28 0.22 -0.82 16 24 C -0.12 -1.67 10.02 22.30 0.22 -1.44 16 25 C 0.03 0.62 7.31 22.45 0.16 0.78 16 26 F -0.16 -4.49 17.11 44.97 0.77 -3.72 16 27 N -0.48 -15.23 3.21 -538.18 -1.73 -16.96 16 28 C 0.06 1.21 9.34 127.77 1.19 2.40 16 29 H 0.03 1.65 5.88 -2.39 -0.01 1.64 16 30 H 0.06 3.86 6.07 -2.39 -0.01 3.84 16 31 H 0.03 1.54 6.47 -2.39 -0.02 1.52 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.02 0.87 6.51 -2.38 -0.02 0.85 16 34 H 0.09 3.47 6.42 -2.39 -0.02 3.46 16 35 H 0.09 2.51 5.43 -2.38 -0.01 2.49 16 36 H 0.12 2.00 7.66 -2.39 -0.02 1.99 16 37 H 0.12 1.42 6.78 -2.39 -0.02 1.40 16 38 H 0.16 1.12 6.30 -2.91 -0.02 1.10 16 39 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 40 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.09 1.53 7.84 -2.39 -0.02 1.51 16 43 H 0.10 1.90 7.60 -2.39 -0.02 1.88 16 44 H 0.12 1.34 7.25 -2.38 -0.02 1.32 16 Total: -1.00 -81.51 360.31 4.86 -76.64 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.05 Total: 9.94 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 7.99 Total: 8.33 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -6.04 Total: -126.71 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.93 Total: -9.54 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.77 Total: -3.72 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -81.51 4.86 -76.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290247747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.277 kcal (2) G-P(sol) polarization free energy of solvation -81.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds