Wall clock time and date at job start Tue Mar 31 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46600 * 2 1 4 4 C 1.50694 * 109.47320 * 120.00326 * 2 1 3 5 5 H 1.08004 * 120.00227 * 119.99826 * 4 2 1 6 6 C 1.37877 * 120.00062 * 300.00041 * 4 2 1 7 7 N 1.31516 * 120.00027 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00451 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47049 * 89.99609 * 8 6 4 10 10 H 1.48494 * 109.47409 * 210.00032 * 8 6 4 11 11 H 1.48504 * 109.46771 * 330.00300 * 8 6 4 12 12 N 1.46893 * 109.46907 * 240.00345 * 2 1 3 13 13 C 1.46902 * 111.00171 * 183.94869 * 12 2 1 14 14 C 1.38584 * 111.00356 * 60.00072 * 12 2 1 15 15 N 1.31211 * 126.47047 * 0.02562 * 14 12 2 16 16 N 1.28527 * 109.86144 * 180.02562 * 15 14 12 17 17 C 1.30294 * 110.05507 * 0.02562 * 16 15 14 18 18 C 1.50696 * 126.35210 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47223 * 90.02190 * 18 17 16 20 20 C 1.35956 * 116.99661 * 180.02562 * 19 18 17 21 21 C 1.38663 * 120.06582 * 0.02562 * 20 19 18 22 22 C 1.38177 * 119.96783 * 180.30405 * 21 20 19 23 23 C 1.38262 * 120.09816 * 359.43674 * 22 21 20 24 24 C 1.38262 * 120.12232 * 0.56250 * 23 22 21 25 25 C 1.38334 * 120.03067 * 359.72038 * 24 23 22 26 26 F 1.35102 * 120.04670 * 180.02562 * 25 24 23 27 27 N 1.36458 * 126.47359 * 180.31234 * 14 12 2 28 28 C 1.46498 * 127.13699 * 359.97438 * 27 14 12 29 29 H 1.09003 * 109.47518 * 59.99898 * 1 2 3 30 30 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47211 * 299.99605 * 1 2 3 32 32 H 0.97004 * 120.00253 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47288 * 296.05248 * 13 12 2 34 34 H 1.09010 * 109.46673 * 56.04532 * 13 12 2 35 35 H 1.08998 * 109.47535 * 176.04362 * 13 12 2 36 36 H 1.09003 * 109.46956 * 330.02214 * 18 17 16 37 37 H 1.08995 * 109.47090 * 210.02734 * 18 17 16 38 38 H 1.08002 * 120.01219 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.95048 * 179.69888 * 22 21 20 40 40 H 1.08001 * 119.94230 * 180.28487 * 23 22 21 41 41 H 1.07998 * 119.98514 * 179.74420 * 24 23 22 42 42 H 1.09001 * 109.46627 * 270.17955 * 28 27 14 43 43 H 1.08994 * 109.47344 * 30.18614 * 28 27 14 44 44 H 1.09001 * 109.46669 * 150.18714 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4859 -2.5664 3.7118 12 7 2.0196 -0.6924 -1.1994 13 6 3.4850 -0.7944 -1.1872 14 6 1.5753 -0.0640 -2.3519 15 7 0.8190 1.0065 -2.4145 16 7 0.5999 1.3151 -3.6428 17 6 1.1980 0.4666 -4.4302 18 6 1.1840 0.4835 -5.9370 19 8 2.2803 1.2656 -6.4149 20 6 2.4129 1.3837 -7.7628 21 6 1.5067 0.7605 -8.6073 22 6 1.6471 0.8767 -9.9770 23 6 2.6832 1.6232 -10.5070 24 6 3.5890 2.2463 -9.6686 25 6 3.4569 2.1286 -8.2966 26 9 4.3415 2.7377 -7.4771 27 7 1.8371 -0.4446 -3.6359 28 6 2.6386 -1.5905 -4.0727 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7089 1.1612 3.4845 33 1 3.9191 0.2045 -1.2301 34 1 3.8069 -1.2914 -0.2720 35 1 3.8163 -1.3720 -2.0501 36 1 0.2477 0.9184 -6.2868 37 1 1.2737 -0.5358 -6.3126 38 1 0.6942 0.1808 -8.1946 39 1 0.9439 0.3872 -10.6345 40 1 2.7878 1.7161 -11.5779 41 1 4.3999 2.8254 -10.0850 42 1 3.6794 -1.2856 -4.1811 43 1 2.5685 -2.3866 -3.3315 44 1 2.2641 -1.9518 -5.0305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290247748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:13 Heat of formation + Delta-G solvation = 57.241051 kcal Electronic energy + Delta-G solvation = -28487.401954 eV Core-core repulsion = 24357.688735 eV Total energy + Delta-G solvation = -4129.713219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -48.97880 -42.63424 -40.30432 -37.85183 -37.17914 -34.82100 -32.91632 -31.36399 -31.06558 -29.75291 -29.28001 -27.84014 -26.94202 -25.27163 -24.31550 -23.17896 -22.79252 -21.92509 -20.58600 -19.61996 -18.86329 -17.47455 -17.09781 -16.78558 -16.48884 -16.15014 -15.98386 -15.54283 -15.31319 -15.12116 -14.83674 -14.70703 -14.52773 -14.01327 -13.64098 -13.23945 -13.19468 -13.01339 -12.80280 -12.68869 -12.39240 -12.06952 -11.87972 -11.56125 -11.51831 -11.28684 -11.03534 -10.92173 -10.60831 -10.48661 -10.24036 -10.07440 -9.95275 -9.65001 -9.49464 -9.34018 -8.69894 -8.55563 -8.48181 -7.47666 -6.06335 -4.14828 0.73699 0.87772 1.77836 2.51470 2.86866 3.19605 3.26819 3.33826 3.36174 3.44467 3.90648 4.17837 4.28343 4.38778 4.44056 4.54454 4.56843 4.62477 4.76791 4.83644 4.93205 5.07417 5.15163 5.24992 5.33061 5.55176 5.56946 5.65579 5.68107 5.78378 5.95524 5.98062 6.01501 6.23985 6.25808 6.40926 6.73732 6.93504 6.98191 7.12394 7.33029 7.41440 7.63176 7.70863 7.94134 8.26033 8.39237 8.85883 9.22306 9.49785 10.99708 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.028554 B = 0.002346 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.359791 B =11934.445305 C =12103.481452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.229 3.771 3 H 0.022 0.978 4 C -0.520 4.520 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.453 5.453 13 C 0.032 3.968 14 C 0.400 3.600 15 N -0.311 5.311 16 N -0.252 5.252 17 C 0.127 3.873 18 C 0.164 3.836 19 O -0.301 6.301 20 C 0.104 3.896 21 C -0.185 4.185 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.069 3.931 26 F -0.131 7.131 27 N -0.485 5.485 28 C 0.078 3.922 29 H 0.045 0.955 30 H 0.023 0.977 31 H 0.088 0.912 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -3.786 -26.184 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.126 3.874 3 H 0.040 0.960 4 C -0.558 4.558 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.519 5.519 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.177 5.177 13 C -0.115 4.115 14 C 0.045 3.955 15 N -0.157 5.157 16 N -0.095 5.095 17 C -0.139 4.139 18 C 0.087 3.913 19 O -0.213 6.213 20 C 0.057 3.943 21 C -0.203 4.203 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.135 4.135 25 C 0.049 3.951 26 F -0.109 7.109 27 N -0.183 5.183 28 C -0.065 4.065 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.134 -2.897 -25.346 25.703 hybrid contribution 1.367 -1.013 0.586 1.799 sum 4.500 -3.910 -24.761 25.468 Atomic orbital electron populations 1.21985 0.96439 0.99315 1.02491 1.19409 0.93671 0.92452 0.81893 0.95979 1.21041 1.32392 1.12870 0.89517 0.91710 1.24906 0.94953 0.95023 0.98985 1.69927 1.35764 1.22485 1.23735 0.86462 0.78511 0.79879 0.82331 1.20654 1.21098 1.19850 1.59078 1.10785 1.48200 0.99633 1.22458 0.85009 1.00769 1.03282 1.23357 0.97379 0.90693 0.84103 1.74927 1.20116 1.10632 1.10021 1.73954 1.18434 1.20171 0.96955 1.23430 1.03129 0.93331 0.94024 1.20595 0.89911 0.95530 0.85253 1.86259 1.48774 1.68508 1.17773 1.19041 0.94971 0.96932 0.83374 1.21224 1.00732 1.04165 0.94214 1.21031 0.97734 0.97676 0.94240 1.20942 0.95243 0.98789 1.00060 1.21053 1.01040 1.01113 0.90335 1.17058 0.90269 0.99619 0.88112 1.91533 1.66289 1.80994 1.72107 1.45999 1.41479 1.24711 1.06078 1.22060 0.95241 0.87294 1.01894 0.93623 0.95750 0.89381 0.92664 0.95008 0.88124 0.93063 0.88284 0.90280 0.84279 0.84939 0.84840 0.84058 0.90477 0.88469 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.77 37.16 0.33 -3.45 16 2 C 0.23 5.93 1.73 -68.87 -0.12 5.81 16 3 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 4 C -0.52 -13.87 7.88 -34.44 -0.27 -14.14 16 5 H 0.06 1.66 6.41 -52.48 -0.34 1.32 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.45 -9.88 4.69 -176.09 -0.83 -10.71 16 13 C 0.03 0.59 9.09 60.07 0.55 1.13 16 14 C 0.40 8.42 6.75 -318.87 -2.15 6.27 16 15 N -0.31 -7.27 9.00 30.32 0.27 -7.00 16 16 N -0.25 -5.29 12.18 32.99 0.40 -4.89 16 17 C 0.13 2.13 7.70 -154.01 -1.19 0.94 16 18 C 0.16 1.90 5.11 36.00 0.18 2.09 16 19 O -0.30 -4.06 9.99 -19.60 -0.20 -4.25 16 20 C 0.10 1.15 6.69 -39.18 -0.26 0.88 16 21 C -0.18 -1.46 9.04 -39.45 -0.36 -1.81 16 22 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 23 C -0.13 -0.82 10.04 -39.56 -0.40 -1.22 16 24 C -0.12 -0.93 10.02 -39.54 -0.40 -1.33 16 25 C 0.07 0.78 7.31 -39.30 -0.29 0.49 16 26 F -0.13 -1.78 17.11 2.25 0.04 -1.74 16 27 N -0.48 -8.06 3.21 -121.46 -0.39 -8.45 16 28 C 0.08 0.88 9.34 59.85 0.56 1.43 16 29 H 0.05 1.18 5.43 -51.93 -0.28 0.89 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.88 6.10 -51.92 -0.32 1.57 16 35 H 0.05 0.74 5.44 -51.93 -0.28 0.46 16 36 H 0.10 0.99 7.66 -51.93 -0.40 0.59 16 37 H 0.08 0.64 6.78 -51.93 -0.35 0.29 16 38 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 39 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 43 H 0.10 1.07 7.60 -51.93 -0.39 0.67 16 44 H 0.08 0.66 7.25 -51.93 -0.38 0.28 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -34.12 362.92 -9.39 -43.51 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.46 Total: -0.97 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -4.31 Total: -2.19 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.09 Total: -55.62 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.25 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.12 -9.39 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290247748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.749 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds