Wall clock time and date at job start Tue Mar 31 2020 19:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46600 * 2 1 4 4 C 1.50694 * 109.47320 * 120.00326 * 2 1 3 5 5 H 1.08004 * 120.00227 * 119.99826 * 4 2 1 6 6 C 1.37877 * 120.00062 * 300.00041 * 4 2 1 7 7 N 1.31516 * 120.00027 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00451 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47049 * 89.99609 * 8 6 4 10 10 H 1.48494 * 109.47409 * 210.00032 * 8 6 4 11 11 H 1.48504 * 109.46771 * 330.00300 * 8 6 4 12 12 N 1.46893 * 109.46907 * 240.00345 * 2 1 3 13 13 C 1.46902 * 111.00171 * 183.94869 * 12 2 1 14 14 C 1.38584 * 111.00356 * 60.00072 * 12 2 1 15 15 N 1.31211 * 126.47047 * 0.02562 * 14 12 2 16 16 N 1.28527 * 109.86144 * 180.02562 * 15 14 12 17 17 C 1.30294 * 110.05507 * 0.02562 * 16 15 14 18 18 C 1.50696 * 126.35210 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47223 * 90.02190 * 18 17 16 20 20 C 1.35956 * 116.99661 * 180.02562 * 19 18 17 21 21 C 1.38663 * 120.06582 * 0.02562 * 20 19 18 22 22 C 1.38177 * 119.96783 * 180.30405 * 21 20 19 23 23 C 1.38262 * 120.09816 * 359.43674 * 22 21 20 24 24 C 1.38262 * 120.12232 * 0.56250 * 23 22 21 25 25 C 1.38334 * 120.03067 * 359.72038 * 24 23 22 26 26 F 1.35102 * 120.04670 * 180.02562 * 25 24 23 27 27 N 1.36458 * 126.47359 * 180.31234 * 14 12 2 28 28 C 1.46498 * 127.13699 * 359.97438 * 27 14 12 29 29 H 1.09003 * 109.47518 * 59.99898 * 1 2 3 30 30 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47211 * 299.99605 * 1 2 3 32 32 H 0.97004 * 120.00253 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47288 * 296.05248 * 13 12 2 34 34 H 1.09010 * 109.46673 * 56.04532 * 13 12 2 35 35 H 1.08998 * 109.47535 * 176.04362 * 13 12 2 36 36 H 1.09003 * 109.46956 * 330.02214 * 18 17 16 37 37 H 1.08995 * 109.47090 * 210.02734 * 18 17 16 38 38 H 1.08002 * 120.01219 * 0.02562 * 21 20 19 39 39 H 1.08003 * 119.95048 * 179.69888 * 22 21 20 40 40 H 1.08001 * 119.94230 * 180.28487 * 23 22 21 41 41 H 1.07998 * 119.98514 * 179.74420 * 24 23 22 42 42 H 1.09001 * 109.46627 * 270.17955 * 28 27 14 43 43 H 1.08994 * 109.47344 * 30.18614 * 28 27 14 44 44 H 1.09001 * 109.46669 * 150.18714 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4859 -2.5664 3.7118 12 7 2.0196 -0.6924 -1.1994 13 6 3.4850 -0.7944 -1.1872 14 6 1.5753 -0.0640 -2.3519 15 7 0.8190 1.0065 -2.4145 16 7 0.5999 1.3151 -3.6428 17 6 1.1980 0.4666 -4.4302 18 6 1.1840 0.4835 -5.9370 19 8 2.2803 1.2656 -6.4149 20 6 2.4129 1.3837 -7.7628 21 6 1.5067 0.7605 -8.6073 22 6 1.6471 0.8767 -9.9770 23 6 2.6832 1.6232 -10.5070 24 6 3.5890 2.2463 -9.6686 25 6 3.4569 2.1286 -8.2966 26 9 4.3415 2.7377 -7.4771 27 7 1.8371 -0.4446 -3.6359 28 6 2.6386 -1.5905 -4.0727 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7089 1.1612 3.4845 33 1 3.9191 0.2045 -1.2301 34 1 3.8069 -1.2914 -0.2720 35 1 3.8163 -1.3720 -2.0501 36 1 0.2477 0.9184 -6.2868 37 1 1.2737 -0.5358 -6.3126 38 1 0.6942 0.1808 -8.1946 39 1 0.9439 0.3872 -10.6345 40 1 2.7878 1.7161 -11.5779 41 1 4.3999 2.8254 -10.0850 42 1 3.6794 -1.2856 -4.1811 43 1 2.5685 -2.3866 -3.3315 44 1 2.2641 -1.9518 -5.0305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290247748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:12 Heat of formation + Delta-G solvation = 36.877741 kcal Electronic energy + Delta-G solvation = -28488.284973 eV Core-core repulsion = 24357.688735 eV Total energy + Delta-G solvation = -4130.596238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.84777 -44.08912 -41.05459 -39.01127 -38.45803 -36.17879 -34.86181 -32.50290 -31.65323 -31.22427 -30.65098 -29.05767 -28.09947 -27.11217 -25.99850 -23.96562 -23.63251 -23.43567 -21.83834 -21.32841 -19.61643 -18.59058 -18.33033 -17.91844 -17.60654 -17.47147 -17.30180 -16.95323 -16.49152 -16.05759 -15.98436 -15.82570 -15.61049 -15.35175 -15.01192 -14.63363 -14.30993 -14.05692 -13.92057 -13.76349 -13.49151 -13.36987 -13.01573 -12.86273 -12.77940 -12.63598 -12.32903 -12.30628 -12.21333 -12.16275 -12.08986 -12.05841 -11.55381 -11.17671 -11.08948 -10.64177 -10.53513 -9.92876 -9.25307 -9.17717 -8.14100 -6.30427 0.14642 0.26970 0.50225 1.21906 1.44753 1.45775 1.55412 1.57056 2.27947 2.40633 2.62724 2.89869 3.15513 3.17518 3.29148 3.60614 3.71523 3.81792 3.87059 4.02516 4.08690 4.24762 4.31224 4.34292 4.36640 4.41924 4.52422 4.54967 4.65704 4.80811 4.84477 4.90094 4.99517 5.11235 5.11677 5.25613 5.28554 5.36994 5.45370 5.46667 5.63015 5.68380 5.87798 5.92557 6.14113 6.21385 6.49910 6.78939 7.38477 7.71608 8.92674 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.028554 B = 0.002346 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.359791 B =11934.445305 C =12103.481452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.241 3.759 3 H -0.026 1.026 4 C -0.529 4.529 5 H 0.077 0.923 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.453 5.453 13 C 0.033 3.967 14 C 0.377 3.623 15 N -0.362 5.362 16 N -0.303 5.303 17 C 0.155 3.845 18 C 0.165 3.835 19 O -0.333 6.333 20 C 0.079 3.921 21 C -0.182 4.182 22 C -0.081 4.081 23 C -0.124 4.124 24 C -0.118 4.118 25 C 0.028 3.972 26 F -0.157 7.157 27 N -0.475 5.475 28 C 0.064 3.936 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.263 0.737 33 H 0.013 0.987 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -6.589 -29.630 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.136 3.864 3 H -0.009 1.009 4 C -0.567 4.567 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.176 5.176 13 C -0.113 4.113 14 C 0.020 3.980 15 N -0.207 5.207 16 N -0.145 5.145 17 C -0.114 4.114 18 C 0.088 3.912 19 O -0.246 6.246 20 C 0.033 3.967 21 C -0.200 4.200 22 C -0.099 4.099 23 C -0.141 4.141 24 C -0.137 4.137 25 C 0.008 3.992 26 F -0.136 7.136 27 N -0.171 5.171 28 C -0.077 4.077 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.697 -5.721 -28.843 29.636 hybrid contribution 1.212 -0.110 1.342 1.812 sum 4.909 -5.831 -27.501 28.538 Atomic orbital electron populations 1.21777 0.97152 0.98642 1.01114 1.18991 0.93078 0.90333 0.84027 1.00880 1.21360 1.32329 1.13062 0.89955 0.90543 1.25848 0.95040 0.95670 1.02358 1.70095 1.37108 1.24143 1.24385 0.85336 0.77820 0.79163 0.77969 1.19996 1.21202 1.18445 1.59004 1.12400 1.47517 0.98691 1.22553 0.83216 1.00417 1.05161 1.23206 0.98246 0.91143 0.85412 1.74740 1.21623 1.12424 1.11933 1.73845 1.21383 1.22493 0.96730 1.24438 0.99794 0.91115 0.96063 1.20910 0.90483 0.98167 0.81592 1.86159 1.49306 1.69477 1.19685 1.19284 0.96251 0.98594 0.82582 1.21542 1.00268 1.03482 0.94711 1.21514 0.97780 0.96597 0.93962 1.21405 0.94101 0.97154 1.01480 1.21341 1.01959 1.01209 0.89170 1.17629 0.90981 1.01315 0.89239 1.91453 1.67330 1.81778 1.73080 1.46242 1.41051 1.25607 1.04238 1.22559 0.95573 0.85532 1.04034 0.93731 0.95765 0.92017 0.92745 0.96785 0.88452 0.88633 0.86673 0.85740 0.81987 0.81438 0.81565 0.82654 0.88996 0.87951 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.10 8.77 71.98 0.63 -6.47 16 2 C 0.24 13.08 1.73 44.17 0.08 13.16 16 3 H -0.03 -1.66 8.11 -2.39 -0.02 -1.68 16 4 C -0.53 -28.83 7.88 25.60 0.20 -28.63 16 5 H 0.08 3.90 6.41 -2.91 -0.02 3.88 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.68 11.32 21.45 0.24 -54.43 16 8 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 12 N -0.45 -20.13 4.69 -711.01 -3.33 -23.46 16 13 C 0.03 1.21 9.09 127.69 1.16 2.38 16 14 C 0.38 16.24 6.75 260.11 1.76 17.99 16 15 N -0.36 -17.79 9.00 -58.00 -0.52 -18.31 16 16 N -0.30 -13.13 12.18 -49.54 -0.60 -13.74 16 17 C 0.15 5.05 7.70 137.64 1.06 6.11 16 18 C 0.16 3.41 5.11 71.23 0.36 3.78 16 19 O -0.33 -8.62 9.99 -93.05 -0.93 -9.55 16 20 C 0.08 1.62 6.69 22.53 0.15 1.77 16 21 C -0.18 -2.20 9.04 22.36 0.20 -2.00 16 22 C -0.08 -0.63 10.04 22.26 0.22 -0.41 16 23 C -0.12 -1.04 10.04 22.28 0.22 -0.82 16 24 C -0.12 -1.67 10.02 22.30 0.22 -1.44 16 25 C 0.03 0.62 7.31 22.45 0.16 0.78 16 26 F -0.16 -4.51 17.11 44.97 0.77 -3.74 16 27 N -0.47 -15.22 3.21 -538.19 -1.73 -16.95 16 28 C 0.06 1.20 9.34 127.77 1.19 2.40 16 29 H 0.04 2.44 5.43 -2.39 -0.01 2.43 16 30 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 32 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 3.61 6.10 -2.38 -0.01 3.60 16 35 H 0.10 2.60 5.44 -2.39 -0.01 2.58 16 36 H 0.12 2.00 7.66 -2.39 -0.02 1.98 16 37 H 0.12 1.41 6.78 -2.39 -0.02 1.39 16 38 H 0.16 1.11 6.30 -2.91 -0.02 1.09 16 39 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 40 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.09 1.53 7.84 -2.39 -0.02 1.51 16 43 H 0.10 1.90 7.60 -2.39 -0.02 1.88 16 44 H 0.12 1.34 7.25 -2.39 -0.02 1.32 16 Total: -1.00 -82.19 362.92 5.05 -77.15 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.04 Total: 8.29 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 8.08 Total: 9.62 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -5.94 Total: -126.90 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.93 Total: -9.55 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.77 Total: -3.74 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -82.19 5.05 -77.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290247748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.025 kcal (2) G-P(sol) polarization free energy of solvation -82.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds