Wall clock time and date at job start Tue Mar 31 2020 23:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00101 * 2 1 4 4 H 1.48499 * 109.46853 * 240.00159 * 3 2 1 5 5 H 1.48499 * 109.46771 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46896 * 119.99950 * 3 2 1 7 7 C 1.37876 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00351 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47224 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47529 * 304.99800 * 10 9 7 12 12 N 1.46499 * 109.47154 * 65.00058 * 10 9 7 13 13 C 1.34781 * 119.99810 * 204.99748 * 12 10 9 14 14 O 1.21586 * 119.99686 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99932 * 179.97438 * 13 12 10 16 16 C 1.45128 * 118.75521 * 359.97438 * 15 13 12 17 17 C 1.54804 * 109.53525 * 90.74294 * 16 15 13 18 18 O 1.38010 * 109.48372 * 67.87846 * 17 16 15 19 19 C 1.42152 * 119.44047 * 296.56966 * 18 17 16 20 20 C 1.51537 * 108.87803 * 87.15323 * 19 18 17 21 21 H 1.09006 * 109.45137 * 28.70497 * 20 19 18 22 22 O 1.42902 * 109.45126 * 148.64075 * 20 19 18 23 23 C 1.47506 * 118.75792 * 180.02562 * 15 13 12 24 24 C 1.50700 * 109.46845 * 184.99798 * 10 9 7 25 25 C 1.38240 * 120.00477 * 279.72422 * 24 10 9 26 26 C 1.38232 * 120.00183 * 179.80960 * 25 24 10 27 27 C 1.38228 * 120.00086 * 0.42509 * 26 25 24 28 28 C 1.38234 * 120.00024 * 359.80937 * 27 26 25 29 29 C 1.38230 * 120.00211 * 359.97438 * 28 27 26 30 30 H 0.96998 * 119.99377 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47163 * 59.99435 * 9 7 2 32 32 H 1.09005 * 109.46789 * 299.99886 * 9 7 2 33 33 H 0.96996 * 120.00291 * 25.00102 * 12 10 9 34 34 H 1.08998 * 109.46114 * 330.71716 * 16 15 13 35 35 H 1.09001 * 109.45504 * 210.75589 * 16 15 13 36 36 H 1.09003 * 109.46827 * 307.87135 * 17 16 15 37 37 H 1.09001 * 109.46846 * 187.88435 * 17 16 15 38 38 H 1.09002 * 109.59112 * 207.00991 * 19 18 17 39 39 H 1.08999 * 109.58924 * 327.30112 * 19 18 17 40 40 H 0.96698 * 113.99717 * 299.99547 * 22 20 19 41 41 H 1.08998 * 109.16483 * 341.99649 * 23 15 13 42 42 H 1.08997 * 109.17387 * 101.25552 * 23 15 13 43 43 H 1.08002 * 119.99161 * 359.97438 * 25 24 10 44 44 H 1.08004 * 119.99663 * 180.20956 * 26 25 24 45 45 H 1.07997 * 120.00013 * 179.79047 * 27 26 25 46 46 H 1.08002 * 120.00033 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00624 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5553 -0.8412 12 7 3.0063 -3.6539 1.2523 13 6 4.2310 -4.2146 1.3001 14 8 4.7039 -4.7276 0.3043 15 7 4.9313 -4.2067 2.4516 16 6 4.3411 -3.5866 3.6234 17 6 3.5465 -4.6461 4.4249 18 8 4.4221 -5.5631 4.9700 19 6 5.2046 -6.3794 4.1086 20 6 6.4798 -5.6400 3.7572 21 1 6.7439 -4.9647 4.5711 22 8 7.5364 -6.5813 3.5584 23 6 6.2692 -4.8276 2.4728 24 6 1.4958 -4.9636 -0.1233 25 6 0.8990 -5.5262 0.9895 26 6 0.2082 -6.7181 0.8752 27 6 0.1217 -7.3519 -0.3502 28 6 0.7226 -6.7919 -1.4620 29 6 1.4096 -5.5978 -1.3486 30 1 -0.4849 0.8401 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 2.6288 -3.2451 2.0468 34 1 3.6686 -2.7875 3.3116 35 1 5.1301 -3.1728 4.2514 36 1 2.8511 -5.1585 3.7599 37 1 2.9903 -4.1555 5.2238 38 1 5.4511 -7.3131 4.6142 39 1 4.6438 -6.5934 3.1988 40 1 7.7274 -7.1275 4.3331 41 1 6.3701 -5.4895 1.6127 42 1 7.0273 -4.0466 2.4141 43 1 0.9702 -5.0330 1.9478 44 1 -0.2609 -7.1558 1.7439 45 1 -0.4152 -8.2848 -0.4388 46 1 0.6553 -7.2873 -2.4193 47 1 1.8794 -5.1604 -2.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297227921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:24 Heat of formation + Delta-G solvation = -85.927161 kcal Electronic energy + Delta-G solvation = -30318.813284 eV Core-core repulsion = 26274.059380 eV Total energy + Delta-G solvation = -4044.753904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.71951 -39.26008 -38.39161 -37.07481 -35.46656 -34.92456 -32.81144 -31.79267 -30.73147 -30.42362 -28.84982 -28.08206 -26.75341 -24.87273 -23.06108 -22.31042 -21.99181 -21.61919 -20.10601 -19.32181 -18.27475 -17.72853 -17.03245 -16.74817 -16.40407 -16.17250 -15.85429 -15.33651 -14.95035 -14.63233 -14.57436 -14.35854 -14.17427 -13.89076 -13.51910 -13.38449 -13.09779 -12.90629 -12.60603 -12.41638 -12.14259 -12.11700 -11.93382 -11.67907 -11.53948 -11.14160 -10.93986 -10.85739 -10.73768 -10.64986 -10.48837 -10.44244 -9.79304 -9.73307 -9.63703 -9.32869 -8.72170 -8.53737 -8.47615 -8.30815 -8.18089 -6.11080 -4.14584 1.77691 1.80284 2.71742 3.26446 3.32101 3.35144 3.41841 3.58201 4.10408 4.21324 4.33604 4.38718 4.52248 4.61881 4.91224 4.93148 5.00963 5.13606 5.25387 5.25936 5.26768 5.36879 5.40604 5.42946 5.54574 5.62501 5.69393 5.77335 5.87149 5.90670 5.94582 6.14264 6.34896 6.40979 6.54324 6.60177 6.83957 6.85542 6.91685 7.03903 7.15638 7.21403 7.40478 7.41197 7.48309 7.63818 7.85724 8.23591 8.36000 8.91187 8.98730 9.50494 10.99318 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.004870 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.929122 B = 5748.512425 C = 7832.847161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.200 3.800 11 H 0.087 0.913 12 N -0.713 5.713 13 C 0.703 3.297 14 O -0.590 6.590 15 N -0.629 5.629 16 C 0.064 3.936 17 C 0.052 3.948 18 O -0.383 6.383 19 C 0.044 3.956 20 C 0.066 3.934 21 H 0.069 0.931 22 O -0.558 6.558 23 C 0.136 3.864 24 C -0.070 4.070 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.135 4.135 28 C -0.122 4.122 29 C -0.107 4.107 30 H 0.262 0.738 31 H 0.036 0.964 32 H 0.024 0.976 33 H 0.396 0.604 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.382 0.618 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -12.836 9.849 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.095 3.905 11 H 0.105 0.895 12 N -0.367 5.367 13 C 0.404 3.596 14 O -0.468 6.468 15 N -0.368 5.368 16 C -0.061 4.061 17 C -0.027 4.027 18 O -0.301 6.301 19 C -0.033 4.033 20 C 0.006 3.994 21 H 0.086 0.914 22 O -0.363 6.363 23 C 0.012 3.988 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.140 4.140 29 C -0.126 4.126 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.232 0.768 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.230 0.770 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.560 -12.808 8.689 16.811 hybrid contribution 0.117 1.061 0.689 1.271 sum 6.677 -11.747 9.378 16.448 Atomic orbital electron populations 1.69950 1.05991 1.26914 1.50182 1.24977 0.94782 0.99159 0.95126 0.86660 0.79550 0.83107 0.78697 1.20213 1.21304 1.20337 1.21089 0.93031 0.90359 1.51369 0.92476 1.19390 0.93175 0.90142 0.98581 1.20155 0.92960 0.91770 0.85608 0.89504 1.45332 1.15967 1.60628 1.14802 1.15981 0.81265 0.79379 0.82962 1.90879 1.70537 1.51577 1.33849 1.46858 1.18245 1.61898 1.09846 1.22523 0.99204 0.96429 0.87914 1.22747 0.91175 0.90173 0.98611 1.86250 1.55575 1.51643 1.36667 1.22986 0.91866 0.93202 0.95244 1.22608 0.87514 0.91137 0.98150 0.91351 1.86501 1.54274 1.53145 1.42414 1.21226 0.82674 0.96859 0.98038 1.20592 0.96666 0.96617 0.93298 1.20858 0.97751 0.95616 0.98354 1.21025 0.99936 0.96057 0.97345 1.20982 1.01102 1.00010 0.93226 1.21041 0.98527 0.96183 0.98276 1.21020 0.99022 0.95047 0.97472 0.92804 0.94624 0.95805 0.76758 0.88792 0.89520 0.93285 0.87265 0.88992 0.91852 0.77029 0.87932 0.91298 0.86872 0.86837 0.86878 0.86614 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.57 8.84 -34.44 -0.30 -13.87 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.50 -27.89 -0.13 0.45 16 10 C 0.20 4.06 2.12 -69.09 -0.15 3.92 16 11 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 12 N -0.71 -12.86 3.86 -59.82 -0.23 -13.09 16 13 C 0.70 12.85 8.19 -86.91 -0.71 12.14 16 14 O -0.59 -12.92 15.31 5.29 0.08 -12.84 16 15 N -0.63 -9.07 2.19 -178.29 -0.39 -9.46 16 16 C 0.06 0.74 5.34 -3.83 -0.02 0.72 16 17 C 0.05 0.54 6.82 38.11 0.26 0.80 16 18 O -0.38 -4.25 9.86 -26.52 -0.26 -4.51 16 19 C 0.04 0.46 6.06 36.42 0.22 0.69 16 20 C 0.07 0.70 3.34 -27.25 -0.09 0.61 16 21 H 0.07 0.66 8.02 -51.93 -0.42 0.25 16 22 O -0.56 -5.51 13.28 -35.23 -0.47 -5.98 16 23 C 0.14 1.82 5.82 -3.27 -0.02 1.80 16 24 C -0.07 -1.31 4.91 -104.62 -0.51 -1.82 16 25 C -0.11 -1.80 9.33 -39.58 -0.37 -2.16 16 26 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 27 C -0.14 -1.93 10.05 -39.59 -0.40 -2.33 16 28 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 29 C -0.11 -1.88 9.67 -39.58 -0.38 -2.26 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 6.53 6.20 -40.82 -0.25 6.27 16 34 H 0.09 1.12 6.17 -51.93 -0.32 0.80 16 35 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.78 7.93 -51.93 -0.41 0.36 16 39 H 0.06 0.82 7.41 -51.93 -0.38 0.44 16 40 H 0.38 1.95 8.96 45.56 0.41 2.36 16 41 H 0.10 1.63 6.98 -51.93 -0.36 1.27 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.11 1.76 7.71 -52.49 -0.40 1.36 16 44 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -32.56 383.07 -9.57 -42.13 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.30 Total: 10.89 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -3.49 Total: -4.28 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.11 Total: -47.01 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.65 Total: -23.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.56 -9.57 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297227921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.794 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds