Wall clock time and date at job start Tue Mar 31 2020 23:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00101 * 2 1 4 4 H 1.48499 * 109.46853 * 240.00159 * 3 2 1 5 5 H 1.48499 * 109.46771 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46896 * 119.99950 * 3 2 1 7 7 C 1.37876 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00351 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47224 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47529 * 304.99800 * 10 9 7 12 12 N 1.46499 * 109.47154 * 65.00058 * 10 9 7 13 13 C 1.34781 * 119.99810 * 204.99748 * 12 10 9 14 14 O 1.21586 * 119.99686 * 359.97438 * 13 12 10 15 15 N 1.34777 * 119.99932 * 179.97438 * 13 12 10 16 16 C 1.45128 * 118.75521 * 359.97438 * 15 13 12 17 17 C 1.54804 * 109.53525 * 90.74294 * 16 15 13 18 18 O 1.38010 * 109.48372 * 67.87846 * 17 16 15 19 19 C 1.42152 * 119.44047 * 296.56966 * 18 17 16 20 20 C 1.51537 * 108.87803 * 87.15323 * 19 18 17 21 21 H 1.09006 * 109.45137 * 28.70497 * 20 19 18 22 22 O 1.42902 * 109.45126 * 148.64075 * 20 19 18 23 23 C 1.47506 * 118.75792 * 180.02562 * 15 13 12 24 24 C 1.50700 * 109.46845 * 184.99798 * 10 9 7 25 25 C 1.38240 * 120.00477 * 279.72422 * 24 10 9 26 26 C 1.38232 * 120.00183 * 179.80960 * 25 24 10 27 27 C 1.38228 * 120.00086 * 0.42509 * 26 25 24 28 28 C 1.38234 * 120.00024 * 359.80937 * 27 26 25 29 29 C 1.38230 * 120.00211 * 359.97438 * 28 27 26 30 30 H 0.96998 * 119.99377 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47163 * 59.99435 * 9 7 2 32 32 H 1.09005 * 109.46789 * 299.99886 * 9 7 2 33 33 H 0.96996 * 120.00291 * 25.00102 * 12 10 9 34 34 H 1.08998 * 109.46114 * 330.71716 * 16 15 13 35 35 H 1.09001 * 109.45504 * 210.75589 * 16 15 13 36 36 H 1.09003 * 109.46827 * 307.87135 * 17 16 15 37 37 H 1.09001 * 109.46846 * 187.88435 * 17 16 15 38 38 H 1.09002 * 109.59112 * 207.00991 * 19 18 17 39 39 H 1.08999 * 109.58924 * 327.30112 * 19 18 17 40 40 H 0.96698 * 113.99717 * 299.99547 * 22 20 19 41 41 H 1.08998 * 109.16483 * 341.99649 * 23 15 13 42 42 H 1.08997 * 109.17387 * 101.25552 * 23 15 13 43 43 H 1.08002 * 119.99161 * 359.97438 * 25 24 10 44 44 H 1.08004 * 119.99663 * 180.20956 * 26 25 24 45 45 H 1.07997 * 120.00013 * 179.79047 * 27 26 25 46 46 H 1.08002 * 120.00033 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.00624 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5553 -0.8412 12 7 3.0063 -3.6539 1.2523 13 6 4.2310 -4.2146 1.3001 14 8 4.7039 -4.7276 0.3043 15 7 4.9313 -4.2067 2.4516 16 6 4.3411 -3.5866 3.6234 17 6 3.5465 -4.6461 4.4249 18 8 4.4221 -5.5631 4.9700 19 6 5.2046 -6.3794 4.1086 20 6 6.4798 -5.6400 3.7572 21 1 6.7439 -4.9647 4.5711 22 8 7.5364 -6.5813 3.5584 23 6 6.2692 -4.8276 2.4728 24 6 1.4958 -4.9636 -0.1233 25 6 0.8990 -5.5262 0.9895 26 6 0.2082 -6.7181 0.8752 27 6 0.1217 -7.3519 -0.3502 28 6 0.7226 -6.7919 -1.4620 29 6 1.4096 -5.5978 -1.3486 30 1 -0.4849 0.8401 0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 2.6288 -3.2451 2.0468 34 1 3.6686 -2.7875 3.3116 35 1 5.1301 -3.1728 4.2514 36 1 2.8511 -5.1585 3.7599 37 1 2.9903 -4.1555 5.2238 38 1 5.4511 -7.3131 4.6142 39 1 4.6438 -6.5934 3.1988 40 1 7.7274 -7.1275 4.3331 41 1 6.3701 -5.4895 1.6127 42 1 7.0273 -4.0466 2.4141 43 1 0.9702 -5.0330 1.9478 44 1 -0.2609 -7.1558 1.7439 45 1 -0.4152 -8.2848 -0.4388 46 1 0.6553 -7.2873 -2.4193 47 1 1.8794 -5.1604 -2.2171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297227921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:23 Heat of formation + Delta-G solvation = -107.876116 kcal Electronic energy + Delta-G solvation = -30319.765062 eV Core-core repulsion = 26274.059380 eV Total energy + Delta-G solvation = -4045.705683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 22.85 seconds Orbital eigenvalues (eV) -41.93152 -40.45678 -39.60819 -37.89163 -36.93655 -36.26419 -34.75200 -32.95773 -31.92299 -31.66289 -30.54070 -29.15437 -27.80261 -26.58774 -24.15150 -23.79848 -23.39886 -22.64664 -21.48695 -20.67446 -19.46888 -18.67526 -18.61707 -17.91223 -17.58867 -17.45089 -17.09916 -16.56760 -16.38833 -16.22075 -15.85515 -15.60221 -15.18349 -14.96105 -14.77961 -14.58625 -14.44001 -14.20571 -14.17551 -13.67074 -13.62748 -13.43908 -13.16876 -12.91348 -12.76125 -12.68281 -12.63207 -12.43437 -12.16416 -11.90440 -11.74224 -11.59179 -11.36415 -11.32754 -11.22516 -10.58562 -10.54342 -10.15251 -9.76916 -9.61501 -9.51176 -8.20094 -6.30212 0.50047 0.55140 1.39349 1.41588 1.49193 1.50152 2.09937 2.39694 2.62036 2.83929 3.03340 3.15215 3.38289 3.64252 3.72594 3.97421 4.00842 4.02054 4.04790 4.11908 4.19397 4.23836 4.31245 4.41156 4.43865 4.59981 4.64243 4.70529 4.73383 4.76940 4.79433 4.85881 4.92312 5.11594 5.18817 5.26757 5.41231 5.44473 5.60079 5.60482 5.63311 5.74712 5.78605 5.97025 6.15608 6.20352 6.41783 6.81525 6.81991 6.96259 7.38568 7.54297 8.90270 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.004870 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.929122 B = 5748.512425 C = 7832.847161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.040 3.960 10 C 0.217 3.783 11 H 0.054 0.946 12 N -0.707 5.707 13 C 0.700 3.300 14 O -0.633 6.633 15 N -0.620 5.620 16 C 0.059 3.941 17 C 0.056 3.944 18 O -0.382 6.382 19 C 0.046 3.954 20 C 0.082 3.918 21 H 0.087 0.913 22 O -0.571 6.571 23 C 0.131 3.869 24 C -0.098 4.098 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.123 4.123 29 C -0.133 4.133 30 H 0.264 0.736 31 H 0.005 0.995 32 H 0.014 0.986 33 H 0.404 0.596 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.034 0.966 40 H 0.404 0.596 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.146 0.854 45 H 0.151 0.849 46 H 0.143 0.857 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -13.914 12.182 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.068 0.932 9 C 0.002 3.998 10 C 0.111 3.889 11 H 0.072 0.928 12 N -0.361 5.361 13 C 0.401 3.599 14 O -0.515 6.515 15 N -0.358 5.358 16 C -0.064 4.064 17 C -0.022 4.022 18 O -0.300 6.300 19 C -0.031 4.031 20 C 0.021 3.979 21 H 0.105 0.895 22 O -0.380 6.380 23 C 0.008 3.992 24 C -0.099 4.099 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.141 4.141 29 C -0.152 4.152 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.241 0.759 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.052 0.948 40 H 0.256 0.744 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.137 0.863 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.161 0.839 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.793 -13.894 11.089 19.031 hybrid contribution 0.061 1.312 -0.049 1.314 sum 6.854 -12.583 11.039 18.088 Atomic orbital electron populations 1.70059 1.07370 1.27791 1.51114 1.25725 0.95528 1.02435 0.94729 0.85673 0.78384 0.79107 0.78882 1.20413 1.20773 1.19013 1.21316 0.92807 0.91579 1.51000 0.93174 1.19121 0.93162 0.90961 0.96520 1.19617 0.91725 0.92025 0.85546 0.92769 1.45094 1.16036 1.60824 1.14195 1.16111 0.81185 0.79029 0.83573 1.90841 1.71415 1.53365 1.35829 1.46855 1.18182 1.61354 1.09451 1.22774 0.99959 0.96653 0.87038 1.22790 0.90742 0.89655 0.99049 1.86263 1.55580 1.51602 1.36599 1.23039 0.91369 0.94288 0.94413 1.22362 0.87819 0.91280 0.96419 0.89493 1.86463 1.53789 1.53452 1.44296 1.21317 0.82073 0.96985 0.98837 1.20481 0.98279 0.96384 0.94753 1.21013 0.98146 0.96692 0.97874 1.21425 0.98877 0.95010 0.98925 1.21458 0.99946 1.00902 0.92385 1.21379 0.97504 0.95089 1.00151 1.21171 1.00407 0.96624 0.96981 0.92680 0.97657 0.96758 0.75863 0.89319 0.87239 0.94742 0.84478 0.86324 0.94750 0.74404 0.91031 0.90769 0.86345 0.83622 0.83115 0.83906 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 13.29 21.45 0.28 -52.93 16 2 C 0.01 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.53 -28.57 8.84 25.60 0.23 -28.34 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.04 1.99 4.50 29.85 0.13 2.13 16 10 C 0.22 9.41 2.12 44.24 0.09 9.51 16 11 H 0.05 2.67 7.44 -2.39 -0.02 2.65 16 12 N -0.71 -26.72 3.86 -461.42 -1.78 -28.50 16 13 C 0.70 26.74 8.19 179.05 1.47 28.21 16 14 O -0.63 -29.45 15.31 -3.99 -0.06 -29.51 16 15 N -0.62 -18.03 2.19 -836.24 -1.83 -19.86 16 16 C 0.06 1.29 5.34 87.25 0.47 1.76 16 17 C 0.06 1.08 6.82 72.60 0.49 1.57 16 18 O -0.38 -7.50 9.86 -117.80 -1.16 -8.66 16 19 C 0.05 0.88 6.06 71.50 0.43 1.32 16 20 C 0.08 1.57 3.34 30.26 0.10 1.67 16 21 H 0.09 1.41 8.02 -2.38 -0.02 1.39 16 22 O -0.57 -10.16 13.28 -148.98 -1.98 -12.14 16 23 C 0.13 3.53 5.82 86.33 0.50 4.03 16 24 C -0.10 -3.80 4.91 -19.86 -0.10 -3.90 16 25 C -0.12 -3.99 9.33 22.27 0.21 -3.78 16 26 C -0.12 -3.44 10.05 22.27 0.22 -3.21 16 27 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 28 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 29 C -0.13 -4.88 9.67 22.27 0.22 -4.66 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.40 13.75 6.20 -92.71 -0.57 13.17 16 34 H 0.09 2.05 6.17 -2.39 -0.01 2.04 16 35 H 0.11 1.93 8.12 -2.39 -0.02 1.91 16 36 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.12 1.66 7.93 -2.39 -0.02 1.64 16 39 H 0.03 0.88 7.41 -2.39 -0.02 0.86 16 40 H 0.40 2.97 8.96 -74.06 -0.66 2.31 16 41 H 0.07 2.39 6.98 -2.39 -0.02 2.37 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.12 3.71 7.71 -2.91 -0.02 3.69 16 44 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 45 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 46 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 47 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -73.41 383.07 0.62 -72.78 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.25 Total: 32.72 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.38 Total: 1.03 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.33 Total: -101.30 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -3.20 Total: -50.31 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.41 0.62 -72.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297227921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.094 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.85 seconds