Wall clock time and date at job start Tue Mar 31 2020 22:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48497 * 109.47208 * 89.99942 * 3 2 1 5 5 H 1.48500 * 109.47155 * 210.00333 * 3 2 1 6 6 H 1.48506 * 109.47117 * 329.99973 * 3 2 1 7 7 C 1.38809 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99556 * 238.04390 * 7 2 1 9 9 N 1.36936 * 120.00279 * 58.04074 * 7 2 1 10 10 C 1.46496 * 119.99923 * 165.71128 * 9 7 2 11 11 C 1.54265 * 110.03555 * 50.31781 * 10 9 7 12 12 C 1.54963 * 104.16370 * 217.13730 * 11 10 9 13 13 C 1.54888 * 102.77712 * 37.88930 * 12 11 10 14 14 C 1.53877 * 110.03399 * 293.10267 * 10 9 7 15 15 C 1.46498 * 119.99844 * 345.70612 * 9 7 2 16 16 H 1.08996 * 109.39666 * 164.95120 * 15 9 7 17 17 C 1.53064 * 109.40434 * 284.78400 * 15 9 7 18 18 C 1.53311 * 108.44456 * 169.10843 * 17 15 9 19 19 C 1.52924 * 108.58802 * 292.33642 * 18 17 15 20 20 N 1.45751 * 110.48590 * 50.79625 * 19 18 17 21 21 C 1.46496 * 117.95016 * 160.94849 * 20 19 18 22 22 C 1.53006 * 109.47213 * 269.97995 * 21 20 19 23 23 F 1.39903 * 109.46976 * 59.99381 * 22 21 20 24 24 F 1.39896 * 109.47445 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.46756 * 299.99907 * 22 21 20 26 26 C 1.33353 * 124.10568 * 340.92046 * 20 19 18 27 27 O 1.21288 * 118.24482 * 182.22292 * 26 20 19 28 28 H 0.97004 * 120.00685 * 355.43033 * 1 2 3 29 29 H 1.09000 * 110.01774 * 171.71284 * 10 9 7 30 30 H 1.08998 * 110.48720 * 335.78351 * 11 10 9 31 31 H 1.09000 * 110.48475 * 98.43037 * 11 10 9 32 32 H 1.08998 * 110.72089 * 279.57557 * 12 11 10 33 33 H 1.08996 * 110.92443 * 156.29587 * 12 11 10 34 34 H 1.09000 * 110.48956 * 203.41045 * 13 12 11 35 35 H 1.08994 * 110.60396 * 80.81505 * 13 12 11 36 36 H 1.08996 * 110.03344 * 238.57669 * 14 10 9 37 37 H 1.09004 * 110.02769 * 359.95280 * 14 10 9 38 38 H 1.09000 * 109.67466 * 288.76419 * 17 15 9 39 39 H 1.08994 * 109.67473 * 49.29574 * 17 15 9 40 40 H 1.09003 * 109.61202 * 172.63043 * 18 17 15 41 41 H 1.09000 * 109.81790 * 52.16998 * 18 17 15 42 42 H 1.08994 * 109.30099 * 290.48525 * 19 18 17 43 43 H 1.08998 * 109.30143 * 171.10666 * 19 18 17 44 44 H 1.08999 * 109.47361 * 29.97469 * 21 20 19 45 45 H 1.08996 * 109.47896 * 149.97952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5476 1.4403 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 2.7090 -1.4225 0.7930 9 7 1.8090 -2.1085 -1.0071 10 6 2.7456 -3.2200 -1.1899 11 6 2.9703 -3.9479 0.1516 12 6 4.4709 -4.3337 0.1270 13 6 5.1292 -3.1058 -0.5499 14 6 4.1178 -2.6851 -1.6360 15 6 0.6570 -1.9667 -1.9009 16 1 0.8011 -2.5955 -2.7795 17 6 -0.6132 -2.4025 -1.1665 18 6 -1.8260 -1.9933 -2.0104 19 6 -1.9155 -0.4668 -2.0272 20 7 -0.6320 0.1154 -2.3988 21 6 -0.6191 1.4995 -2.8787 22 6 -0.7938 1.5140 -4.3987 23 9 -2.0132 0.9156 -4.7336 24 9 -0.7820 2.8357 -4.8569 25 9 0.2536 0.8038 -4.9952 26 6 0.5313 -0.5327 -2.3289 27 8 1.5419 0.0682 -2.6266 28 1 -0.4851 0.8374 0.0669 29 1 2.3572 -3.9170 -1.9324 30 1 2.7620 -3.2802 0.9875 31 1 2.3472 -4.8403 0.2103 32 1 4.6282 -5.2333 -0.4681 33 1 4.8546 -4.4693 1.1381 34 1 6.0810 -3.3842 -1.0023 35 1 5.2716 -2.3009 0.1711 36 1 4.3955 -3.1231 -2.5947 37 1 4.0864 -1.5986 -1.7173 38 1 -0.6079 -3.4844 -1.0344 39 1 -0.6604 -1.9138 -0.1934 40 1 -2.7336 -2.4080 -1.5718 41 1 -1.7096 -2.3641 -3.0288 42 1 -2.1989 -0.1116 -1.0365 43 1 -2.6731 -0.1583 -2.7475 44 1 -1.4351 2.0528 -2.4140 45 1 0.3310 1.9657 -2.6178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336843848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:13 Heat of formation + Delta-G solvation = -132.515797 kcal Electronic energy + Delta-G solvation = -32826.856348 eV Core-core repulsion = 28238.225468 eV Total energy + Delta-G solvation = -4588.630880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 29.70 seconds Orbital eigenvalues (eV) -49.71996 -47.29434 -47.14266 -39.84508 -37.64388 -35.42466 -34.77059 -32.45391 -31.25837 -28.48968 -28.10112 -27.89101 -26.45718 -24.23691 -23.42216 -21.97053 -21.23631 -20.02122 -19.15451 -18.45766 -18.14903 -17.79737 -17.10416 -16.66019 -15.68688 -15.53683 -15.28663 -14.67287 -14.33443 -14.14930 -14.10149 -14.05889 -13.68169 -13.39895 -13.35696 -13.25417 -13.16594 -13.01096 -12.66119 -12.53868 -12.24067 -12.12168 -11.86075 -11.55087 -11.26170 -11.08079 -10.84871 -10.64767 -10.46334 -10.40858 -10.34504 -10.25708 -10.13783 -9.97807 -9.80075 -9.62817 -9.51112 -8.55087 -8.15077 -7.82730 -7.07034 -6.22929 -2.92999 3.05566 3.39095 3.52212 3.58608 3.80283 3.94435 4.31463 4.42950 4.48218 4.71538 4.99816 5.17774 5.33363 5.37808 5.41890 5.52020 5.60149 5.66639 5.76259 5.82022 6.04146 6.07391 6.19353 6.19624 6.23152 6.24711 6.35663 6.41146 6.47611 6.51627 6.59822 6.61261 6.73502 6.80736 6.85837 6.97872 7.10651 7.16284 7.28896 7.65194 7.99041 8.11089 8.37009 9.04022 9.36035 9.75964 10.28320 10.75845 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.005350 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.568593 B = 5232.726897 C = 5529.764110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.060 3.940 3 Si 0.837 3.163 4 H -0.306 1.306 5 H -0.281 1.281 6 H -0.295 1.295 7 C -0.297 4.297 8 H 0.087 0.913 9 N -0.566 5.566 10 C 0.183 3.817 11 C -0.133 4.133 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.138 4.138 15 C 0.191 3.809 16 H 0.060 0.940 17 C -0.138 4.138 18 C -0.122 4.122 19 C 0.133 3.867 20 N -0.588 5.588 21 C 0.073 3.927 22 C 0.430 3.570 23 F -0.189 7.189 24 F -0.192 7.192 25 F -0.175 7.175 26 C 0.553 3.447 27 O -0.546 6.546 28 H 0.258 0.742 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -3.642 -3.913 7.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.142 4.142 3 Si 0.665 3.335 4 H -0.234 1.234 5 H -0.207 1.207 6 H -0.222 1.222 7 C -0.421 4.421 8 H 0.105 0.895 9 N -0.286 5.286 10 C 0.075 3.925 11 C -0.172 4.172 12 C -0.161 4.161 13 C -0.156 4.156 14 C -0.178 4.178 15 C 0.081 3.919 16 H 0.078 0.922 17 C -0.178 4.178 18 C -0.161 4.161 19 C 0.010 3.990 20 N -0.321 5.321 21 C -0.054 4.054 22 C 0.374 3.626 23 F -0.171 7.171 24 F -0.173 7.173 25 F -0.156 7.156 26 C 0.344 3.656 27 O -0.422 6.422 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.173 -3.319 -4.137 6.749 hybrid contribution 0.370 1.261 -0.305 1.349 sum -3.803 -2.058 -4.442 6.199 Atomic orbital electron populations 1.70506 1.06390 1.26639 1.42897 1.24828 0.94175 0.97767 0.97431 0.87335 0.83922 0.86204 0.76008 1.23447 1.20732 1.22173 1.18518 1.25121 0.93378 1.05103 0.89517 1.43981 1.23446 1.29407 1.31716 1.20904 0.89160 0.88077 0.94380 1.22826 0.94171 0.99455 1.00700 1.22440 0.96812 0.97466 0.99376 1.22253 0.97379 0.97472 0.98469 1.22704 0.95772 1.03015 0.96263 1.19847 0.89216 0.90372 0.92490 0.92172 1.22514 0.91983 0.99031 1.04266 1.21704 1.00084 0.94367 0.99919 1.21214 0.83406 0.94224 1.00123 1.47015 1.08703 1.10247 1.66107 1.22364 1.07594 0.89647 0.85837 1.21729 0.73592 0.72982 0.94281 1.93124 1.45714 1.83988 1.94256 1.93135 1.96310 1.36784 1.91105 1.93213 1.57742 1.78578 1.86091 1.20563 0.81371 0.90617 0.73098 1.90534 1.34810 1.67493 1.49369 0.93131 0.93072 0.89868 0.93206 0.92657 0.92747 0.93352 0.91993 0.93870 0.90019 0.94368 0.84960 0.91374 0.93290 0.90817 0.93083 0.87396 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.32 6.20 55.49 0.34 -18.98 16 2 C 0.06 1.52 2.86 -17.43 -0.05 1.47 16 3 Si 0.84 21.55 27.68 -169.99 -4.71 16.84 16 4 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 5 H -0.28 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.30 -7.56 6.82 56.52 0.39 -7.17 16 7 C -0.30 -7.38 7.69 -15.06 -0.12 -7.50 16 8 H 0.09 2.23 6.69 -52.48 -0.35 1.88 16 9 N -0.57 -12.63 2.19 -158.45 -0.35 -12.97 16 10 C 0.18 3.53 3.40 -66.81 -0.23 3.30 16 11 C -0.13 -2.32 6.35 -25.03 -0.16 -2.48 16 12 C -0.12 -1.86 6.91 -24.70 -0.17 -2.04 16 13 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 14 C -0.14 -2.63 6.34 -25.61 -0.16 -2.79 16 15 C 0.19 4.06 2.71 -69.30 -0.19 3.87 16 16 H 0.06 1.23 7.72 -51.93 -0.40 0.83 16 17 C -0.14 -2.61 5.22 -26.54 -0.14 -2.75 16 18 C -0.12 -1.91 6.02 -26.61 -0.16 -2.07 16 19 C 0.13 2.16 5.46 -4.48 -0.02 2.13 16 20 N -0.59 -11.29 1.59 -174.96 -0.28 -11.57 16 21 C 0.07 1.31 5.32 -4.04 -0.02 1.29 16 22 C 0.43 7.38 3.29 37.16 0.12 7.51 16 23 F -0.19 -3.02 15.90 2.25 0.04 -2.99 16 24 F -0.19 -3.14 17.32 2.25 0.04 -3.10 16 25 F -0.17 -3.45 16.08 2.25 0.04 -3.41 16 26 C 0.55 12.34 3.56 -11.87 -0.04 12.30 16 27 O -0.55 -14.02 12.21 5.55 0.07 -13.95 16 28 H 0.26 5.97 7.99 -40.82 -0.33 5.64 16 29 H 0.05 0.93 7.72 -51.93 -0.40 0.53 16 30 H 0.08 1.65 6.05 -51.93 -0.31 1.34 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.88 7.61 -51.93 -0.40 1.48 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.13 2.91 5.49 -51.93 -0.29 2.62 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.07 1.23 7.19 -51.93 -0.37 0.86 16 43 H 0.05 0.72 6.88 -51.93 -0.36 0.37 16 44 H 0.11 1.59 8.01 -51.93 -0.42 1.18 16 45 H 0.12 2.51 6.68 -51.93 -0.35 2.16 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -26.96 343.47 -7.73 -34.69 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.58 Total: 0.15 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -1.51 Total: 10.11 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.28 Total: -43.52 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.95 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 0.11 Total: -9.49 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.96 -7.73 -34.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336843848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.830 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.70 seconds