Wall clock time and date at job start Tue Mar 31 2020 22:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99806 * 2 1 4 4 H 1.48497 * 109.47208 * 89.99942 * 3 2 1 5 5 H 1.48500 * 109.47155 * 210.00333 * 3 2 1 6 6 H 1.48506 * 109.47117 * 329.99973 * 3 2 1 7 7 C 1.38809 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99556 * 238.04390 * 7 2 1 9 9 N 1.36936 * 120.00279 * 58.04074 * 7 2 1 10 10 C 1.46496 * 119.99923 * 165.71128 * 9 7 2 11 11 C 1.54265 * 110.03555 * 50.31781 * 10 9 7 12 12 C 1.54963 * 104.16370 * 217.13730 * 11 10 9 13 13 C 1.54888 * 102.77712 * 37.88930 * 12 11 10 14 14 C 1.53877 * 110.03399 * 293.10267 * 10 9 7 15 15 C 1.46498 * 119.99844 * 345.70612 * 9 7 2 16 16 H 1.08996 * 109.39666 * 164.95120 * 15 9 7 17 17 C 1.53064 * 109.40434 * 284.78400 * 15 9 7 18 18 C 1.53311 * 108.44456 * 169.10843 * 17 15 9 19 19 C 1.52924 * 108.58802 * 292.33642 * 18 17 15 20 20 N 1.45751 * 110.48590 * 50.79625 * 19 18 17 21 21 C 1.46496 * 117.95016 * 160.94849 * 20 19 18 22 22 C 1.53006 * 109.47213 * 269.97995 * 21 20 19 23 23 F 1.39903 * 109.46976 * 59.99381 * 22 21 20 24 24 F 1.39896 * 109.47445 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.46756 * 299.99907 * 22 21 20 26 26 C 1.33353 * 124.10568 * 340.92046 * 20 19 18 27 27 O 1.21288 * 118.24482 * 182.22292 * 26 20 19 28 28 H 0.97004 * 120.00685 * 355.43033 * 1 2 3 29 29 H 1.09000 * 110.01774 * 171.71284 * 10 9 7 30 30 H 1.08998 * 110.48720 * 335.78351 * 11 10 9 31 31 H 1.09000 * 110.48475 * 98.43037 * 11 10 9 32 32 H 1.08998 * 110.72089 * 279.57557 * 12 11 10 33 33 H 1.08996 * 110.92443 * 156.29587 * 12 11 10 34 34 H 1.09000 * 110.48956 * 203.41045 * 13 12 11 35 35 H 1.08994 * 110.60396 * 80.81505 * 13 12 11 36 36 H 1.08996 * 110.03344 * 238.57669 * 14 10 9 37 37 H 1.09004 * 110.02769 * 359.95280 * 14 10 9 38 38 H 1.09000 * 109.67466 * 288.76419 * 17 15 9 39 39 H 1.08994 * 109.67473 * 49.29574 * 17 15 9 40 40 H 1.09003 * 109.61202 * 172.63043 * 18 17 15 41 41 H 1.09000 * 109.81790 * 52.16998 * 18 17 15 42 42 H 1.08994 * 109.30099 * 290.48525 * 19 18 17 43 43 H 1.08998 * 109.30143 * 171.10666 * 19 18 17 44 44 H 1.08999 * 109.47361 * 29.97469 * 21 20 19 45 45 H 1.08996 * 109.47896 * 149.97952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5476 1.4403 -0.7001 6 1 1.4475 2.6527 -0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 2.7090 -1.4225 0.7930 9 7 1.8090 -2.1085 -1.0071 10 6 2.7456 -3.2200 -1.1899 11 6 2.9703 -3.9479 0.1516 12 6 4.4709 -4.3337 0.1270 13 6 5.1292 -3.1058 -0.5499 14 6 4.1178 -2.6851 -1.6360 15 6 0.6570 -1.9667 -1.9009 16 1 0.8011 -2.5955 -2.7795 17 6 -0.6132 -2.4025 -1.1665 18 6 -1.8260 -1.9933 -2.0104 19 6 -1.9155 -0.4668 -2.0272 20 7 -0.6320 0.1154 -2.3988 21 6 -0.6191 1.4995 -2.8787 22 6 -0.7938 1.5140 -4.3987 23 9 -2.0132 0.9156 -4.7336 24 9 -0.7820 2.8357 -4.8569 25 9 0.2536 0.8038 -4.9952 26 6 0.5313 -0.5327 -2.3289 27 8 1.5419 0.0682 -2.6266 28 1 -0.4851 0.8374 0.0669 29 1 2.3572 -3.9170 -1.9324 30 1 2.7620 -3.2802 0.9875 31 1 2.3472 -4.8403 0.2103 32 1 4.6282 -5.2333 -0.4681 33 1 4.8546 -4.4693 1.1381 34 1 6.0810 -3.3842 -1.0023 35 1 5.2716 -2.3009 0.1711 36 1 4.3955 -3.1231 -2.5947 37 1 4.0864 -1.5986 -1.7173 38 1 -0.6079 -3.4844 -1.0344 39 1 -0.6604 -1.9138 -0.1934 40 1 -2.7336 -2.4080 -1.5718 41 1 -1.7096 -2.3641 -3.0288 42 1 -2.1989 -0.1116 -1.0365 43 1 -2.6731 -0.1583 -2.7475 44 1 -1.4351 2.0528 -2.4140 45 1 0.3310 1.9657 -2.6178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336843848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:02 Heat of formation + Delta-G solvation = -145.307964 kcal Electronic energy + Delta-G solvation = -32827.411058 eV Core-core repulsion = 28238.225468 eV Total energy + Delta-G solvation = -4589.185590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 17.18 seconds Orbital eigenvalues (eV) -51.11274 -48.64542 -48.58348 -41.47445 -39.15250 -37.04538 -36.35235 -34.13418 -32.95963 -29.94530 -29.61108 -29.32619 -28.12191 -25.85551 -24.90975 -23.55081 -22.70018 -21.39879 -20.78907 -19.88484 -19.56087 -19.26308 -18.59166 -18.35531 -17.31600 -17.13157 -16.92644 -16.21330 -15.99208 -15.74071 -15.51518 -15.49077 -15.06317 -14.86307 -14.80652 -14.74834 -14.67092 -14.60247 -14.19555 -13.98687 -13.82976 -13.75711 -13.46977 -13.11431 -12.93968 -12.68355 -12.52683 -12.34593 -12.18078 -11.88515 -11.81782 -11.77176 -11.73033 -11.59748 -11.28024 -11.21996 -11.13971 -10.25625 -9.98584 -9.45049 -8.84230 -8.17837 -4.84743 1.29046 1.41703 1.66230 1.67361 1.99235 2.33664 2.49582 2.87216 3.01932 3.02556 3.31215 3.57019 3.91676 3.99290 4.02814 4.17676 4.23477 4.28811 4.37304 4.45404 4.54641 4.62327 4.69531 4.77464 4.90037 4.91836 4.96917 4.98102 5.03624 5.21132 5.24655 5.29933 5.33728 5.39161 5.44015 5.54781 5.65437 5.67559 5.72116 5.84732 6.22512 6.28359 6.78754 7.19050 7.68174 7.90325 8.39348 8.77911 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.005350 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.568593 B = 5232.726897 C = 5529.764110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.053 3.947 3 Si 0.831 3.169 4 H -0.313 1.313 5 H -0.326 1.326 6 H -0.294 1.294 7 C -0.285 4.285 8 H 0.070 0.930 9 N -0.576 5.576 10 C 0.172 3.828 11 C -0.126 4.126 12 C -0.110 4.110 13 C -0.116 4.116 14 C -0.136 4.136 15 C 0.181 3.819 16 H 0.069 0.931 17 C -0.127 4.127 18 C -0.116 4.116 19 C 0.127 3.873 20 N -0.588 5.588 21 C 0.071 3.929 22 C 0.440 3.560 23 F -0.176 7.176 24 F -0.186 7.186 25 F -0.192 7.192 26 C 0.546 3.454 27 O -0.590 6.590 28 H 0.261 0.739 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.059 0.941 37 H 0.030 0.970 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 -5.967 -4.392 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.149 4.149 3 Si 0.662 3.338 4 H -0.243 1.243 5 H -0.256 1.256 6 H -0.220 1.220 7 C -0.410 4.410 8 H 0.088 0.912 9 N -0.296 5.296 10 C 0.065 3.935 11 C -0.165 4.165 12 C -0.148 4.148 13 C -0.154 4.154 14 C -0.176 4.176 15 C 0.071 3.929 16 H 0.086 0.914 17 C -0.167 4.167 18 C -0.154 4.154 19 C 0.006 3.994 20 N -0.319 5.319 21 C -0.056 4.056 22 C 0.384 3.616 23 F -0.158 7.158 24 F -0.167 7.167 25 F -0.174 7.174 26 C 0.337 3.663 27 O -0.470 6.470 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.161 0.839 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.325 -5.664 -4.611 9.662 hybrid contribution 1.075 1.985 -0.244 2.271 sum -5.250 -3.679 -4.854 8.041 Atomic orbital electron populations 1.70531 1.05052 1.26459 1.41865 1.24924 0.94730 0.96839 0.98398 0.87317 0.83109 0.88469 0.74876 1.24277 1.25588 1.22029 1.18456 1.24076 0.93813 1.04697 0.91231 1.44069 1.24716 1.29650 1.31148 1.21211 0.88524 0.87748 0.96030 1.22706 0.96383 0.99231 0.98132 1.22402 0.94540 0.97338 1.00535 1.22232 0.98033 0.97728 0.97405 1.22630 0.97039 0.99734 0.98161 1.20115 0.90022 0.89987 0.92773 0.91356 1.22286 0.92096 0.99442 1.02838 1.21702 0.99788 0.93819 1.00079 1.21465 0.82331 0.94760 1.00856 1.47073 1.09045 1.10567 1.65249 1.22418 1.07248 0.89274 0.86683 1.21450 0.73528 0.73069 0.93576 1.93143 1.44737 1.83802 1.94117 1.93148 1.96285 1.36334 1.90978 1.93185 1.58782 1.79058 1.86334 1.20863 0.81651 0.91143 0.72621 1.90521 1.36617 1.68503 1.51316 0.92796 0.91273 0.92788 0.91294 0.89976 0.91311 0.90955 0.94225 0.92228 0.95101 0.93109 0.87794 0.88206 0.92258 0.91004 0.90186 0.83928 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.17 6.20 21.65 0.13 -37.03 16 2 C 0.05 2.74 2.86 84.86 0.24 2.99 16 3 Si 0.83 45.00 27.68 68.60 1.90 46.90 16 4 H -0.31 -17.01 7.11 99.48 0.71 -16.30 16 5 H -0.33 -19.83 7.11 99.48 0.71 -19.12 16 6 H -0.29 -15.65 6.82 99.48 0.68 -14.97 16 7 C -0.29 -14.55 7.69 84.03 0.65 -13.91 16 8 H 0.07 3.74 6.69 -2.91 -0.02 3.72 16 9 N -0.58 -25.73 2.19 -655.20 -1.43 -27.17 16 10 C 0.17 6.48 3.40 45.72 0.16 6.64 16 11 C -0.13 -4.19 6.35 31.69 0.20 -3.98 16 12 C -0.11 -3.05 6.91 31.91 0.22 -2.83 16 13 C -0.12 -3.77 6.83 31.67 0.22 -3.56 16 14 C -0.14 -5.22 6.34 31.32 0.20 -5.02 16 15 C 0.18 7.49 2.71 44.10 0.12 7.61 16 16 H 0.07 2.68 7.72 -2.39 -0.02 2.66 16 17 C -0.13 -4.47 5.22 30.72 0.16 -4.31 16 18 C -0.12 -3.16 6.02 30.67 0.18 -2.97 16 19 C 0.13 3.70 5.46 86.50 0.47 4.17 16 20 N -0.59 -21.71 1.59 -826.64 -1.32 -23.03 16 21 C 0.07 2.48 5.32 86.38 0.46 2.94 16 22 C 0.44 14.48 3.29 71.98 0.24 14.72 16 23 F -0.18 -5.13 15.90 44.97 0.71 -4.41 16 24 F -0.19 -5.84 17.32 44.97 0.78 -5.06 16 25 F -0.19 -7.52 16.08 44.97 0.72 -6.80 16 26 C 0.55 24.25 3.56 87.71 0.31 24.56 16 27 O -0.59 -31.23 12.21 -3.05 -0.04 -31.27 16 28 H 0.26 11.87 7.99 -92.71 -0.74 11.13 16 29 H 0.07 2.36 7.72 -2.39 -0.02 2.34 16 30 H 0.05 2.13 6.05 -2.39 -0.01 2.11 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.03 1.48 7.61 -2.38 -0.02 1.46 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 4.35 5.49 -2.39 -0.01 4.34 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 42 H 0.07 2.16 7.19 -2.39 -0.02 2.14 16 43 H 0.08 1.91 6.88 -2.39 -0.02 1.89 16 44 H 0.14 3.88 8.01 -2.39 -0.02 3.86 16 45 H 0.09 3.71 6.68 -2.39 -0.02 3.69 16 Total: -1.00 -61.88 343.47 6.29 -55.59 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.01 Total: 5.25 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 3.83 Total: 27.03 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.62 Total: -87.23 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.04 Total: -31.27 kcal Atomic # 9 Polarization: -18.49 SS G_CDS: 2.22 Total: -16.27 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Total: -61.88 6.29 -55.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336843848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.719 kcal (2) G-P(sol) polarization free energy of solvation -61.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.18 seconds