Wall clock time and date at job start Tue Mar 31 2020 19:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.47070 * 240.00050 * 2 1 3 5 5 C 1.46893 * 110.99924 * 84.99937 * 4 2 1 6 6 C 1.50706 * 109.47176 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99544 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47598 * 90.00303 * 9 8 6 11 11 H 1.08005 * 119.99628 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00538 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99774 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00058 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47013 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46808 * 120.00120 * 14 12 10 17 17 H 1.48501 * 109.46891 * 240.00253 * 14 12 10 18 18 C 1.46495 * 119.99828 * 0.02562 * 8 6 5 19 19 C 1.53004 * 109.46986 * 90.00387 * 18 8 6 20 20 C 1.47205 * 109.46941 * 179.97438 * 19 18 8 21 21 N 6.96655 * 102.38496 * 316.25938 * 2 1 3 22 22 C 1.50705 * 109.47076 * 120.00264 * 2 1 3 23 23 C 1.38629 * 120.79833 * 99.71355 * 22 2 1 24 24 C 1.38193 * 119.18844 * 179.80138 * 23 22 2 25 25 N 1.31881 * 120.82152 * 0.48646 * 24 23 22 26 26 C 1.31839 * 121.74662 * 359.74525 * 25 24 23 27 27 C 1.38459 * 120.72872 * 0.02562 * 26 25 24 28 28 F 1.35104 * 120.44238 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46732 * 300.00283 * 1 2 3 31 31 H 1.09005 * 109.46884 * 59.99705 * 1 2 3 32 32 H 1.00904 * 110.99923 * 321.05019 * 4 2 1 33 33 H 1.09001 * 109.46739 * 60.00281 * 5 4 2 34 34 H 1.09000 * 109.47767 * 300.00540 * 5 4 2 35 35 H 1.09008 * 109.47096 * 209.99661 * 9 8 6 36 36 H 1.09003 * 109.47776 * 329.99537 * 9 8 6 37 37 H 0.97002 * 119.99965 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.46971 * 209.99938 * 18 8 6 39 39 H 1.08993 * 109.47768 * 330.00002 * 18 8 6 40 40 H 1.08996 * 109.46936 * 299.99297 * 19 18 8 41 41 H 1.08997 * 109.47532 * 59.99922 * 19 18 8 42 42 H 1.08000 * 120.41119 * 0.03152 * 23 22 2 43 43 H 1.07996 * 119.59034 * 180.20879 * 24 23 22 44 44 H 1.08009 * 119.63189 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3468 6 6 2.5885 -0.5215 -3.5558 7 8 2.8688 -1.6984 -3.4699 8 7 2.7296 0.1208 -4.7321 9 6 3.2210 -0.6027 -5.9073 10 6 2.0551 -1.1934 -6.6576 11 1 1.0486 -1.0450 -6.2949 12 6 2.2731 -1.9232 -7.8068 13 7 3.4986 -2.1043 -8.2482 14 14 0.8278 -2.6558 -8.7363 15 1 -0.4362 -2.3108 -8.0375 16 1 0.7964 -2.1062 -10.1154 17 1 0.9744 -4.1324 -8.7950 18 6 2.3916 1.5425 -4.8355 19 6 3.6288 2.3852 -4.5192 20 6 3.2893 3.8137 -4.6237 21 7 3.0242 4.9160 -4.7045 22 6 2.0324 -0.7105 1.2305 23 6 2.4584 -2.0281 1.1651 24 6 2.9165 -2.6460 2.3132 25 7 2.9427 -2.0010 3.4632 26 6 2.5416 -0.7493 3.5659 27 6 2.0740 -0.0631 2.4579 28 9 1.6648 1.2196 2.5696 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.4495 -1.4979 -1.4101 33 1 2.7589 1.0461 -2.1181 34 1 1.0871 0.6164 -2.5525 35 1 3.7607 0.0853 -6.5582 36 1 3.8903 -1.4018 -5.5886 37 1 3.6521 -2.6180 -9.0565 38 1 2.0513 1.7624 -5.8475 39 1 1.5990 1.7801 -4.1261 40 1 3.9691 2.1654 -3.5073 41 1 4.4214 2.1477 -5.2287 42 1 2.4361 -2.5640 0.2277 43 1 3.2532 -3.6712 2.2690 44 1 2.5782 -0.2538 4.5249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338359962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:16 Heat of formation + Delta-G solvation = -12.587774 kcal Electronic energy + Delta-G solvation = -28027.885220 eV Core-core repulsion = 23895.143996 eV Total energy + Delta-G solvation = -4132.741224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 5.90 seconds Orbital eigenvalues (eV) -49.22635 -40.39909 -39.42710 -37.25179 -36.78821 -35.26198 -33.10357 -32.63328 -31.13861 -30.89257 -30.02753 -27.88088 -25.94153 -24.68963 -24.06107 -23.55067 -22.45504 -21.30493 -18.84378 -17.86681 -17.66055 -17.46227 -17.05013 -16.55611 -16.31250 -16.07012 -15.83493 -15.39896 -14.78780 -14.67077 -14.44765 -14.31649 -14.14618 -14.01617 -13.79287 -13.68484 -13.40337 -13.07333 -12.97447 -12.54794 -12.46977 -12.41291 -12.30480 -12.16258 -11.85380 -11.66080 -11.59025 -11.32457 -11.02918 -10.91037 -10.68320 -10.24433 -9.86032 -9.81359 -9.74488 -9.20870 -9.15106 -8.58697 -8.52417 -7.90497 -6.13697 -4.18592 0.69500 0.85645 2.68116 2.76895 3.22196 3.24124 3.32505 3.33291 3.37413 3.43106 3.75290 3.89928 4.15491 4.23625 4.30375 4.37892 4.56804 4.64373 4.77819 4.87238 4.89557 5.00428 5.06442 5.20217 5.21664 5.24284 5.28973 5.31334 5.42763 5.51251 5.57531 5.66164 5.76932 5.79350 5.86861 6.01340 6.39307 6.61049 6.92355 7.14000 7.31277 7.37587 7.53411 7.57960 7.82171 8.11886 8.19650 8.78128 8.92634 9.47235 10.94420 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.002970 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.600516 B = 9424.408039 C =11111.056444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 H 0.096 0.904 4 N -0.664 5.664 5 C 0.037 3.963 6 C 0.507 3.493 7 O -0.519 6.519 8 N -0.597 5.597 9 C 0.245 3.755 10 C -0.529 4.529 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.117 3.883 19 C -0.051 4.051 20 C 0.216 3.784 21 N -0.445 5.445 22 C -0.059 4.059 23 C -0.116 4.116 24 C 0.086 3.914 25 N -0.464 5.464 26 C 0.069 3.931 27 C 0.045 3.955 28 F -0.131 7.131 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.356 0.644 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.118 0.882 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 4.884 18.669 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.012 3.988 3 H 0.114 0.886 4 N -0.297 5.297 5 C -0.095 4.095 6 C 0.293 3.707 7 O -0.394 6.394 8 N -0.330 5.330 9 C 0.127 3.873 10 C -0.568 4.568 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.102 4.102 21 N -0.122 5.122 22 C -0.068 4.068 23 C -0.136 4.136 24 C -0.071 4.071 25 N -0.172 5.172 26 C -0.089 4.089 27 C 0.023 3.977 28 F -0.110 7.110 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.177 0.823 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.173 0.827 43 H 0.181 0.819 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.268 5.467 19.313 20.199 hybrid contribution -1.915 0.046 -1.596 2.493 sum -4.183 5.513 17.717 19.021 Atomic orbital electron populations 1.22485 0.95229 1.03063 1.03102 1.20338 0.93273 0.97531 0.87674 0.88570 1.60180 1.57883 1.09307 1.02308 1.21992 1.01079 0.96061 0.90399 1.20139 0.79268 0.87668 0.83631 1.90698 1.49130 1.15552 1.84021 1.48205 1.65021 1.08462 1.11291 1.19352 0.95293 0.92245 0.80447 1.21433 0.93345 1.33454 1.08545 0.92408 1.24917 0.95851 0.95948 0.97258 1.69925 1.19438 1.40458 1.23283 0.86469 0.82497 0.79100 0.79498 1.19858 1.20984 1.20854 1.21305 0.93935 0.81472 1.04200 1.19910 1.01986 0.81653 1.05683 1.29141 0.93238 0.94956 0.92853 1.81240 1.08856 1.12857 1.09274 1.20361 0.97950 0.95092 0.93429 1.22104 0.96808 0.93829 1.00872 1.22915 0.96133 1.00508 0.87518 1.67708 1.13886 1.07792 1.27828 1.22819 0.97105 0.91184 0.97830 1.18659 1.02960 0.80578 0.95462 1.91503 1.88068 1.34770 1.96654 0.91701 0.91584 0.91408 0.82305 0.88524 0.92302 0.94730 0.93486 0.92679 0.88709 0.90810 0.87558 0.86413 0.82703 0.81890 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.14 37.16 0.34 -1.13 16 2 C 0.12 1.14 2.59 -68.86 -0.18 0.96 16 3 H 0.10 0.87 7.67 -51.93 -0.40 0.47 16 4 N -0.66 -7.46 4.77 -109.22 -0.52 -7.98 16 5 C 0.04 0.42 4.52 -4.98 -0.02 0.40 16 6 C 0.51 8.56 7.71 -10.98 -0.08 8.48 16 7 O -0.52 -11.17 15.78 5.56 0.09 -11.08 16 8 N -0.60 -10.20 2.46 -175.06 -0.43 -10.63 16 9 C 0.25 5.58 5.16 -5.20 -0.03 5.56 16 10 C -0.53 -13.65 9.39 -34.44 -0.32 -13.97 16 11 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 14 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 19 C -0.05 -0.50 6.03 -29.51 -0.18 -0.67 16 20 C 0.22 2.49 15.44 -20.74 -0.32 2.17 16 21 N -0.44 -6.35 18.54 42.18 0.78 -5.57 16 22 C -0.06 -0.58 5.12 -104.26 -0.53 -1.12 16 23 C -0.12 -1.13 9.40 -39.45 -0.37 -1.50 16 24 C 0.09 0.81 11.18 -17.55 -0.20 0.61 16 25 N -0.46 -4.88 10.36 -13.20 -0.14 -5.01 16 26 C 0.07 0.65 11.17 -17.47 -0.20 0.46 16 27 C 0.05 0.44 7.29 -39.28 -0.29 0.16 16 28 F -0.13 -1.30 16.80 2.25 0.04 -1.26 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 7.45 -51.93 -0.39 0.14 16 32 H 0.36 4.20 7.77 -39.29 -0.31 3.89 16 33 H 0.10 0.91 7.10 -51.93 -0.37 0.54 16 34 H 0.06 0.58 6.70 -51.93 -0.35 0.24 16 35 H 0.03 0.79 8.07 -51.92 -0.42 0.37 16 36 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.07 0.73 6.44 -51.93 -0.33 0.40 16 40 H 0.11 0.84 7.22 -51.93 -0.37 0.46 16 41 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.16 1.49 6.99 -52.49 -0.37 1.12 16 43 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -32.54 385.17 -6.92 -39.46 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.77 Total: 1.38 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.49 Total: 3.41 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.43 Total: -53.40 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.54 -6.92 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338359962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.870 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.90 seconds