Wall clock time and date at job start Tue Mar 31 2020 19:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.47070 * 240.00050 * 2 1 3 5 5 C 1.46893 * 110.99924 * 84.99937 * 4 2 1 6 6 C 1.50706 * 109.47176 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99544 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47598 * 90.00303 * 9 8 6 11 11 H 1.08005 * 119.99628 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00538 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99774 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00058 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47013 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46808 * 120.00120 * 14 12 10 17 17 H 1.48501 * 109.46891 * 240.00253 * 14 12 10 18 18 C 1.46495 * 119.99828 * 0.02562 * 8 6 5 19 19 C 1.53004 * 109.46986 * 90.00387 * 18 8 6 20 20 C 1.47205 * 109.46941 * 179.97438 * 19 18 8 21 21 N 6.96655 * 102.38496 * 316.25938 * 2 1 3 22 22 C 1.50705 * 109.47076 * 120.00264 * 2 1 3 23 23 C 1.38629 * 120.79833 * 99.71355 * 22 2 1 24 24 C 1.38193 * 119.18844 * 179.80138 * 23 22 2 25 25 N 1.31881 * 120.82152 * 0.48646 * 24 23 22 26 26 C 1.31839 * 121.74662 * 359.74525 * 25 24 23 27 27 C 1.38459 * 120.72872 * 0.02562 * 26 25 24 28 28 F 1.35104 * 120.44238 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46732 * 300.00283 * 1 2 3 31 31 H 1.09005 * 109.46884 * 59.99705 * 1 2 3 32 32 H 1.00904 * 110.99923 * 321.05019 * 4 2 1 33 33 H 1.09001 * 109.46739 * 60.00281 * 5 4 2 34 34 H 1.09000 * 109.47767 * 300.00540 * 5 4 2 35 35 H 1.09008 * 109.47096 * 209.99661 * 9 8 6 36 36 H 1.09003 * 109.47776 * 329.99537 * 9 8 6 37 37 H 0.97002 * 119.99965 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.46971 * 209.99938 * 18 8 6 39 39 H 1.08993 * 109.47768 * 330.00002 * 18 8 6 40 40 H 1.08996 * 109.46936 * 299.99297 * 19 18 8 41 41 H 1.08997 * 109.47532 * 59.99922 * 19 18 8 42 42 H 1.08000 * 120.41119 * 0.03152 * 23 22 2 43 43 H 1.07996 * 119.59034 * 180.20879 * 24 23 22 44 44 H 1.08009 * 119.63189 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3468 6 6 2.5885 -0.5215 -3.5558 7 8 2.8688 -1.6984 -3.4699 8 7 2.7296 0.1208 -4.7321 9 6 3.2210 -0.6027 -5.9073 10 6 2.0551 -1.1934 -6.6576 11 1 1.0486 -1.0450 -6.2949 12 6 2.2731 -1.9232 -7.8068 13 7 3.4986 -2.1043 -8.2482 14 14 0.8278 -2.6558 -8.7363 15 1 -0.4362 -2.3108 -8.0375 16 1 0.7964 -2.1062 -10.1154 17 1 0.9744 -4.1324 -8.7950 18 6 2.3916 1.5425 -4.8355 19 6 3.6288 2.3852 -4.5192 20 6 3.2893 3.8137 -4.6237 21 7 3.0242 4.9160 -4.7045 22 6 2.0324 -0.7105 1.2305 23 6 2.4584 -2.0281 1.1651 24 6 2.9165 -2.6460 2.3132 25 7 2.9427 -2.0010 3.4632 26 6 2.5416 -0.7493 3.5659 27 6 2.0740 -0.0631 2.4579 28 9 1.6648 1.2196 2.5696 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.4495 -1.4979 -1.4101 33 1 2.7589 1.0461 -2.1181 34 1 1.0871 0.6164 -2.5525 35 1 3.7607 0.0853 -6.5582 36 1 3.8903 -1.4018 -5.5886 37 1 3.6521 -2.6180 -9.0565 38 1 2.0513 1.7624 -5.8475 39 1 1.5990 1.7801 -4.1261 40 1 3.9691 2.1654 -3.5073 41 1 4.4214 2.1477 -5.2287 42 1 2.4361 -2.5640 0.2277 43 1 3.2532 -3.6712 2.2690 44 1 2.5782 -0.2538 4.5249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338359962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:14 Heat of formation + Delta-G solvation = -33.309415 kcal Electronic energy + Delta-G solvation = -28028.783778 eV Core-core repulsion = 23895.143996 eV Total energy + Delta-G solvation = -4133.639782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 26.03 seconds Orbital eigenvalues (eV) -49.95944 -41.16524 -40.67744 -38.15445 -37.79931 -36.59793 -34.86343 -33.61407 -32.13127 -31.84801 -30.85322 -29.38042 -27.13479 -25.47900 -25.28251 -24.50097 -23.81581 -22.03739 -20.07979 -18.85256 -18.56985 -18.33966 -18.22456 -18.01381 -17.41440 -16.94623 -16.80147 -16.53928 -16.25709 -15.69672 -15.36762 -15.28855 -15.06920 -14.92516 -14.61434 -14.58403 -14.43658 -14.18065 -14.09635 -13.76953 -13.56077 -13.51096 -13.29993 -13.07392 -13.03227 -12.84033 -12.74225 -12.63268 -12.50720 -12.27486 -12.15292 -11.83732 -11.61785 -10.64669 -10.57459 -10.55317 -10.47622 -9.92620 -9.46053 -9.40668 -8.15991 -6.28057 -0.02631 0.12513 1.40569 1.43183 1.53040 1.70045 1.85046 1.95489 2.23256 2.45001 2.67353 2.91842 3.10880 3.15984 3.24153 3.51735 3.57948 3.79911 3.87456 3.93413 4.06001 4.13839 4.14026 4.20000 4.36915 4.44682 4.57974 4.61184 4.65083 4.78606 4.86316 4.88299 4.96579 5.07895 5.09691 5.15776 5.18350 5.37745 5.63823 5.68893 5.84768 5.95386 6.15491 6.25711 6.61990 6.79332 6.86117 6.86432 7.37580 7.57944 8.90767 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.002970 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.600516 B = 9424.408039 C =11111.056444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.128 3.872 3 H 0.105 0.895 4 N -0.676 5.676 5 C 0.050 3.950 6 C 0.502 3.498 7 O -0.575 6.575 8 N -0.599 5.599 9 C 0.261 3.739 10 C -0.536 4.536 11 H 0.055 0.945 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.957 3.043 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.286 1.286 18 C 0.114 3.886 19 C -0.039 4.039 20 C 0.246 3.754 21 N -0.490 5.490 22 C -0.064 4.064 23 C -0.124 4.124 24 C 0.083 3.917 25 N -0.483 5.483 26 C 0.067 3.933 27 C 0.039 3.961 28 F -0.132 7.132 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.351 0.649 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.152 0.848 43 H 0.182 0.818 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.271 6.126 19.860 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.018 3.982 3 H 0.123 0.877 4 N -0.308 5.308 5 C -0.082 4.082 6 C 0.290 3.710 7 O -0.453 6.453 8 N -0.330 5.330 9 C 0.139 3.861 10 C -0.575 4.575 11 H 0.073 0.927 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.783 3.217 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.212 1.212 18 C -0.011 4.011 19 C -0.080 4.080 20 C -0.072 4.072 21 N -0.168 5.168 22 C -0.073 4.073 23 C -0.144 4.144 24 C -0.073 4.073 25 N -0.192 5.192 26 C -0.091 4.091 27 C 0.018 3.982 28 F -0.110 7.110 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.136 0.864 42 H 0.170 0.830 43 H 0.199 0.801 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.464 6.765 20.523 21.885 hybrid contribution -1.523 -0.363 -1.925 2.482 sum -4.987 6.402 18.598 20.291 Atomic orbital electron populations 1.22442 0.94251 1.03073 1.03652 1.20344 0.93944 0.97487 0.86446 0.87662 1.60150 1.58455 1.09440 1.02766 1.21963 1.02713 0.95731 0.87793 1.21107 0.77939 0.87274 0.84662 1.90675 1.51409 1.18261 1.84986 1.48064 1.64795 1.10216 1.09941 1.18774 0.93749 0.91470 0.82082 1.21781 0.93993 1.33111 1.08607 0.92693 1.25721 0.98144 0.96590 0.98433 1.70032 1.21272 1.41501 1.23866 0.85522 0.79757 0.77931 0.78515 1.19075 1.20180 1.21175 1.21517 0.95989 0.78802 1.04790 1.19852 1.00678 0.79963 1.07479 1.29197 0.91876 0.94761 0.91331 1.81286 1.10254 1.14293 1.10986 1.20499 0.97820 0.95197 0.93830 1.22126 0.97336 0.94024 1.00893 1.23241 0.95562 1.01325 0.87206 1.67763 1.14710 1.08417 1.28283 1.23180 0.96260 0.90954 0.98702 1.18675 1.03388 0.80633 0.95553 1.91500 1.88124 1.34733 1.96662 0.92029 0.91212 0.90598 0.82898 0.85530 0.89725 0.95037 0.97824 0.92661 0.89919 0.87395 0.84586 0.86351 0.83008 0.80110 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.14 71.98 0.66 -1.77 16 2 C 0.13 2.06 2.59 44.17 0.11 2.18 16 3 H 0.11 1.54 7.67 -2.39 -0.02 1.52 16 4 N -0.68 -13.87 4.77 -499.45 -2.38 -16.25 16 5 C 0.05 0.99 4.52 85.56 0.39 1.37 16 6 C 0.50 16.40 7.71 87.66 0.68 17.08 16 7 O -0.57 -25.16 15.78 -3.02 -0.05 -25.21 16 8 N -0.60 -19.87 2.46 -826.16 -2.03 -21.90 16 9 C 0.26 12.10 5.16 85.63 0.44 12.54 16 10 C -0.54 -27.94 9.39 25.60 0.24 -27.69 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 12 C 0.01 0.55 5.46 84.66 0.46 1.01 16 13 N -0.93 -52.86 13.29 21.45 0.28 -52.58 16 14 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 18 C 0.11 2.51 5.17 86.38 0.45 2.96 16 19 C -0.04 -0.64 6.03 28.79 0.17 -0.47 16 20 C 0.25 5.03 15.44 89.44 1.38 6.41 16 21 N -0.49 -13.09 18.54 20.01 0.37 -12.72 16 22 C -0.06 -1.17 5.12 -19.63 -0.10 -1.27 16 23 C -0.12 -2.30 9.40 22.35 0.21 -2.09 16 24 C 0.08 1.48 11.18 84.67 0.95 2.43 16 25 N -0.48 -9.59 10.36 -195.66 -2.03 -11.62 16 26 C 0.07 1.17 11.17 84.74 0.95 2.11 16 27 C 0.04 0.70 7.29 22.46 0.16 0.87 16 28 F -0.13 -2.32 16.80 44.97 0.76 -1.56 16 29 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.93 7.45 -2.38 -0.02 0.91 16 32 H 0.35 7.92 7.77 -89.69 -0.70 7.22 16 33 H 0.13 1.79 7.10 -2.39 -0.02 1.77 16 34 H 0.09 1.31 6.70 -2.39 -0.02 1.29 16 35 H 0.03 1.47 8.07 -2.38 -0.02 1.45 16 36 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.08 2.07 8.07 -2.38 -0.02 2.05 16 39 H 0.11 1.68 6.44 -2.39 -0.02 1.66 16 40 H 0.14 1.55 7.22 -2.39 -0.02 1.53 16 41 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.15 2.89 6.99 -2.91 -0.02 2.87 16 43 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -72.76 385.17 4.44 -68.32 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.35 Total: 13.23 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.15 Total: 15.67 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -5.78 Total: -115.07 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.76 Total: -1.56 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.76 4.44 -68.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338359962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.010 kcal (2) G-P(sol) polarization free energy of solvation -72.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.03 seconds