Wall clock time and date at job start Tue Mar 31 2020 23:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47014 * 240.00142 * 3 2 1 5 5 H 1.48501 * 109.47290 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47297 * 119.99781 * 3 2 1 7 7 C 1.38949 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99514 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99888 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99703 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00364 * 180.02562 * 10 9 7 13 13 N 1.46494 * 109.47402 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00160 * 179.97438 * 13 12 10 15 15 O 1.21279 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00082 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47310 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47523 * 180.02562 * 17 16 14 19 19 O 1.42893 * 109.47460 * 179.97438 * 18 17 16 20 20 C 1.42896 * 114.00368 * 180.02562 * 19 18 17 21 21 C 1.52995 * 109.47376 * 180.02562 * 20 19 18 22 22 C 1.50707 * 109.47301 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99792 * 90.00016 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97953 * 22 21 20 28 28 H 0.97000 * 120.00075 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00226 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47024 * 59.99764 * 12 10 9 31 31 H 1.09001 * 109.46842 * 299.99840 * 12 10 9 32 32 H 0.97005 * 119.99897 * 0.02562 * 13 12 10 33 33 H 1.08993 * 109.47228 * 60.00405 * 16 14 13 34 34 H 1.09004 * 109.47564 * 300.00176 * 16 14 13 35 35 H 1.08998 * 109.47484 * 59.99590 * 17 16 14 36 36 H 1.09001 * 109.46810 * 299.99854 * 17 16 14 37 37 H 1.09006 * 109.46948 * 59.99612 * 18 17 16 38 38 H 1.08998 * 109.47057 * 300.00511 * 18 17 16 39 39 H 1.08995 * 109.47430 * 59.99865 * 20 19 18 40 40 H 1.09004 * 109.46934 * 300.00059 * 20 19 18 41 41 H 1.09005 * 109.47610 * 60.00060 * 21 20 19 42 42 H 1.09000 * 109.47256 * 299.99402 * 21 20 19 43 43 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 44 44 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 47 47 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0022 12 6 1.2438 -4.8629 0.0032 13 7 2.1958 -5.9764 0.0050 14 6 1.7465 -7.2470 0.0063 15 8 0.5542 -7.4687 0.0055 16 6 2.7258 -8.3925 0.0075 17 6 1.9609 -9.7176 0.0082 18 6 2.9551 -10.8805 0.0101 19 8 2.2406 -12.1180 0.0113 20 6 3.0805 -13.2741 0.0137 21 6 2.2133 -14.5345 0.0142 22 6 3.0991 -15.7538 0.0161 23 6 3.5044 -16.3118 1.2142 24 6 4.3165 -17.4305 1.2159 25 6 4.7228 -17.9915 0.0196 26 6 4.3219 -17.4303 -1.1784 27 6 3.5060 -16.3144 -1.1801 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0024 30 1 0.6175 -4.9212 -0.8869 31 1 0.6168 -4.9201 0.8930 32 1 3.1495 -5.7991 0.0059 33 1 3.3524 -8.3339 0.8974 34 1 3.3526 -8.3357 -0.8826 35 1 1.3345 -9.7760 -0.8819 36 1 1.3339 -9.7746 0.8980 37 1 3.5811 -10.8218 0.9005 38 1 3.5824 -10.8236 -0.8795 39 1 3.7091 -13.2647 0.9041 40 1 3.7105 -13.2673 -0.8758 41 1 1.5850 -14.5438 -0.8765 42 1 1.5831 -14.5416 0.9036 43 1 3.1866 -15.8737 2.1488 44 1 4.6335 -17.8662 2.1518 45 1 5.3569 -18.8657 0.0210 46 1 4.6428 -17.8660 -2.1130 47 1 3.1887 -15.8789 -2.1161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343535360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:55 Heat of formation + Delta-G solvation = -139.196298 kcal Electronic energy + Delta-G solvation = -25846.862280 eV Core-core repulsion = 21799.798453 eV Total energy + Delta-G solvation = -4047.063828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -41.02106 -40.26470 -39.92335 -38.91927 -36.26151 -35.30737 -35.08877 -33.88297 -33.37064 -31.77008 -30.15190 -29.31067 -27.48224 -26.10637 -24.37005 -23.46228 -22.91248 -21.77084 -21.38540 -21.19696 -20.05867 -18.63255 -17.81093 -17.48657 -17.39967 -17.09934 -16.92147 -16.85697 -16.30320 -16.17765 -15.88556 -15.70723 -15.69028 -15.42478 -14.81874 -14.61703 -14.25862 -13.94034 -13.91194 -13.79071 -13.61646 -13.54374 -13.30925 -12.96250 -12.89340 -12.54637 -12.47169 -12.44014 -12.13597 -11.99128 -11.90405 -11.86215 -11.68179 -11.56199 -10.99987 -10.55992 -10.53918 -10.18771 -10.08011 -9.82119 -9.63959 -8.51137 -6.01706 0.41231 0.49903 1.38143 1.42995 1.53900 1.63063 1.91171 2.01614 2.31246 2.65890 2.95293 3.14406 3.16102 3.73322 3.89827 3.92781 4.02427 4.11121 4.18951 4.19740 4.20203 4.30850 4.35331 4.41589 4.41891 4.48931 4.51951 4.54062 4.56537 4.63194 4.64935 4.73987 4.93835 4.97517 5.15274 5.18652 5.18693 5.25031 5.34440 5.38570 5.57827 5.63611 5.71097 5.91385 6.12366 6.27896 6.46092 6.56650 7.03029 7.21007 7.44266 7.93898 8.65545 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.049393 B = 0.001175 C = 0.001164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.742724 B =23814.528622 C =24050.272418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.709 5.709 14 C 0.509 3.491 15 O -0.586 6.586 16 C -0.126 4.126 17 C -0.098 4.098 18 C 0.065 3.935 19 O -0.412 6.412 20 C 0.069 3.931 21 C -0.076 4.076 22 C -0.092 4.092 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.128 4.128 28 H 0.280 0.720 29 H 0.398 0.602 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.416 0.584 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -33.088 0.043 34.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.467 6.467 16 C -0.165 4.165 17 C -0.136 4.136 18 C -0.011 4.011 19 O -0.332 6.332 20 C -0.007 4.007 21 C -0.113 4.113 22 C -0.092 4.092 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.146 4.146 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.254 0.746 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.149 0.851 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.145 -33.060 0.041 34.049 hybrid contribution 0.153 1.164 0.001 1.174 sum 8.298 -31.896 0.042 32.958 Atomic orbital electron populations 1.69678 1.07060 1.29720 1.49209 1.26126 0.96498 1.02683 0.95682 0.84932 0.77730 0.76217 0.79141 1.19441 1.19662 1.19432 1.19727 0.93024 0.83587 1.50579 0.89478 1.41850 1.09574 1.04657 1.63401 1.20440 0.88150 0.85921 0.83553 1.90467 1.15082 1.87552 1.58046 1.20749 0.91901 0.84191 1.03984 1.45782 1.11360 1.04632 1.74546 1.21339 0.89992 0.84141 0.74725 1.90688 1.18908 1.85310 1.51758 1.21539 0.97468 0.90163 1.07335 1.21124 0.97851 0.91385 1.03244 1.22533 0.94096 0.82672 1.01802 1.87830 1.35281 1.14419 1.95655 1.22493 0.92815 0.84396 1.01000 1.20429 0.96858 0.89901 1.04161 1.19810 0.98773 0.96815 0.93814 1.21326 0.98494 0.96816 0.97956 1.21456 0.97787 0.96123 0.99177 1.21500 1.00259 1.00647 0.92531 1.21457 0.97776 0.96150 0.99160 1.21325 0.98457 0.96835 0.97976 0.91058 0.76762 0.89072 0.89083 0.74599 0.85945 0.85947 0.92091 0.92099 0.91574 0.91567 0.92594 0.92604 0.90280 0.90278 0.85145 0.84353 0.84276 0.84351 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.65 13.05 21.66 0.28 -48.37 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 1.00 41.44 29.55 68.60 2.03 43.47 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.34 -18.64 9.68 84.04 0.81 -17.83 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -27.99 5.29 -306.98 -1.62 -29.61 16 10 C 0.43 19.74 7.85 87.66 0.69 20.42 16 11 O -0.62 -31.62 15.24 -3.08 -0.05 -31.67 16 12 C 0.12 4.33 6.15 85.63 0.53 4.85 16 13 N -0.71 -22.03 5.53 -466.82 -2.58 -24.61 16 14 C 0.51 14.67 7.83 87.66 0.69 15.36 16 15 O -0.59 -21.44 15.98 -3.03 -0.05 -21.49 16 16 C -0.13 -2.28 5.70 29.85 0.17 -2.11 16 17 C -0.10 -1.98 4.87 30.59 0.15 -1.83 16 18 C 0.07 1.03 5.94 71.98 0.43 1.46 16 19 O -0.41 -8.10 10.34 -148.98 -1.54 -9.64 16 20 C 0.07 1.01 5.92 71.98 0.43 1.44 16 21 C -0.08 -1.05 5.71 29.85 0.17 -0.88 16 22 C -0.09 -1.25 5.13 -19.86 -0.10 -1.35 16 23 C -0.13 -1.62 9.70 22.27 0.22 -1.40 16 24 C -0.13 -1.41 10.05 22.27 0.22 -1.18 16 25 C -0.13 -1.37 10.05 22.27 0.22 -1.15 16 26 C -0.13 -1.41 10.05 22.27 0.22 -1.18 16 27 C -0.13 -1.62 9.70 22.27 0.22 -1.40 16 28 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 30 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.42 12.35 7.44 -92.70 -0.69 11.66 16 33 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 1.11 8.09 -2.38 -0.02 1.09 16 42 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 43 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 46 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 47 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -69.63 404.74 1.56 -68.08 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.44 Total: 40.64 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.53 Total: 13.21 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -3.92 Total: -102.59 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -1.64 Total: -62.79 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -69.63 1.56 -68.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343535360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.120 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds