Wall clock time and date at job start Tue Mar 31 2020 21:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00058 * 3 2 1 5 5 H 1.48506 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47666 * 119.99175 * 3 2 1 7 7 C 1.37875 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47354 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00109 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99919 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99868 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.38245 * 119.94414 * 269.72151 * 18 17 16 20 20 C 1.38194 * 120.11209 * 179.77527 * 19 18 17 21 21 C 1.38696 * 120.06709 * 0.56953 * 20 19 18 22 22 C 1.38973 * 119.82304 * 359.61873 * 21 20 19 23 23 C 1.38197 * 119.94186 * 90.00068 * 18 17 16 24 24 O 1.36102 * 120.78860 * 180.26372 * 22 21 20 25 25 C 1.43177 * 116.71679 * 342.82184 * 24 22 21 26 26 C 1.53473 * 108.25134 * 46.15791 * 25 24 22 27 27 O 1.36109 * 119.39863 * 179.53576 * 21 20 19 28 28 H 0.97000 * 119.99960 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46988 * 60.00185 * 9 7 2 30 30 H 1.08995 * 109.47392 * 299.99853 * 9 7 2 31 31 H 1.09003 * 109.46554 * 60.00370 * 10 9 7 32 32 H 1.08995 * 109.47120 * 300.00471 * 10 9 7 33 33 H 0.97006 * 119.99928 * 359.97438 * 11 10 9 34 34 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 35 35 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 36 36 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 37 37 H 1.09001 * 109.46832 * 299.99854 * 16 15 14 38 38 H 1.08996 * 109.46952 * 59.99873 * 16 15 14 39 39 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 40 40 H 1.09004 * 109.47298 * 59.99717 * 17 16 15 41 41 H 1.08004 * 119.94210 * 0.03312 * 19 18 17 42 42 H 1.08004 * 119.96444 * 180.29313 * 20 19 18 43 43 H 1.07997 * 119.96766 * 359.97438 * 23 18 17 44 44 H 1.08997 * 109.71057 * 165.84798 * 25 24 22 45 45 H 1.08995 * 109.70494 * 286.46878 * 25 24 22 46 46 H 1.08999 * 109.70887 * 59.94544 * 26 25 24 47 47 H 1.08996 * 109.71178 * 180.57827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.4024 -6.0980 0.0017 14 7 1.5126 -7.2652 -0.0008 15 6 2.2451 -8.5340 -0.0009 16 6 1.2509 -9.6968 -0.0028 17 6 2.0158 -11.0219 -0.0023 18 6 1.0365 -12.1673 -0.0036 19 6 0.5912 -12.6958 1.1937 20 6 -0.3104 -13.7432 1.1966 21 6 -0.7619 -14.2746 -0.0023 22 6 -0.3114 -13.7459 -1.2060 23 6 0.5895 -12.6913 -1.2017 24 8 -0.7457 -14.2488 -2.3938 25 6 -1.3578 -15.5427 -2.3598 26 6 -2.3584 -15.5706 -1.1964 27 8 -1.6426 -15.3123 0.0164 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6043 0.8906 32 1 2.8719 -3.6043 -0.8894 33 1 0.5426 -4.9308 0.0000 34 1 0.5426 -7.2652 -0.0015 35 1 2.8725 -8.5912 -0.8904 36 1 2.8712 -8.5922 0.8896 37 1 0.6233 -9.6397 0.8865 38 1 0.6252 -9.6384 -0.8935 39 1 2.6437 -11.0792 -0.8915 40 1 2.6413 -11.0800 0.8885 41 1 0.9454 -12.2868 2.1284 42 1 -0.6603 -14.1511 2.1334 43 1 0.9421 -12.2793 -2.1357 44 1 -1.8802 -15.7270 -3.2984 45 1 -0.5951 -16.3062 -2.2070 46 1 -3.1174 -14.8027 -1.3459 47 1 -2.8319 -16.5508 -1.1422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343843755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:52 Heat of formation + Delta-G solvation = -99.491225 kcal Electronic energy + Delta-G solvation = -26647.999556 eV Core-core repulsion = 22602.657470 eV Total energy + Delta-G solvation = -4045.342086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.81 seconds Orbital eigenvalues (eV) -41.66679 -39.54481 -38.66505 -37.67844 -35.93933 -34.66391 -33.41723 -32.74281 -31.41139 -30.75510 -29.57184 -28.69083 -26.20010 -24.89726 -24.24628 -23.05975 -21.96520 -21.04409 -20.80311 -20.38566 -19.00215 -17.88377 -17.70063 -17.60991 -16.36592 -15.98782 -15.91887 -15.76156 -15.46455 -14.94096 -14.84876 -14.75393 -14.49921 -14.30488 -14.23328 -13.91208 -13.71656 -13.41419 -13.22342 -13.04074 -12.47886 -12.26601 -12.18255 -12.10657 -11.58095 -11.44939 -11.29001 -11.16150 -11.07605 -10.97078 -10.88277 -10.62352 -10.27195 -9.90560 -9.52177 -9.24474 -9.00250 -8.96065 -8.44903 -8.40036 -8.19684 -6.06360 -4.08938 0.87177 0.91708 2.55091 2.75878 3.08102 3.31489 3.33692 3.37230 3.41312 3.65374 3.71455 4.18777 4.27029 4.33882 4.40477 4.42668 4.57994 4.70717 4.73844 4.86261 4.89783 4.93028 5.00666 5.04473 5.12575 5.27799 5.30672 5.41553 5.54313 5.66006 5.72670 5.77985 5.90284 5.98047 6.18947 6.27318 6.34541 6.43985 6.45110 6.66793 6.81888 6.97897 7.05231 7.29377 7.60378 7.66881 7.92867 8.29428 8.49002 8.95925 9.05490 9.55619 11.05259 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.001391 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.594091 B =20121.302798 C =20500.444886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.698 3.302 13 O -0.599 6.599 14 N -0.755 5.755 15 C 0.140 3.860 16 C -0.126 4.126 17 C -0.074 4.074 18 C -0.073 4.073 19 C -0.111 4.111 20 C -0.111 4.111 21 C 0.043 3.957 22 C 0.052 3.948 23 C -0.110 4.110 24 O -0.308 6.308 25 C 0.021 3.979 26 C 0.020 3.980 27 O -0.309 6.309 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.393 0.607 34 H 0.394 0.606 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -35.873 -1.574 36.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.397 3.603 13 O -0.478 6.478 14 N -0.412 5.412 15 C 0.015 3.985 16 C -0.164 4.164 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.002 4.002 22 C 0.007 3.993 23 C -0.128 4.128 24 O -0.222 6.222 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.224 6.224 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.140 0.860 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.694 -35.759 -1.611 36.102 hybrid contribution -0.800 0.681 -0.164 1.063 sum -5.493 -35.078 -1.775 35.550 Atomic orbital electron populations 1.69946 1.06085 1.26923 1.50414 1.24989 0.94890 0.99376 0.95016 0.86568 0.79505 0.82647 0.78780 1.20119 1.21279 1.20110 1.21024 0.93248 0.90391 1.51328 0.92264 1.19326 0.94272 0.91091 0.97800 1.21580 0.95629 0.80456 1.00615 1.45536 1.09828 1.05363 1.78572 1.16073 0.85644 0.80525 0.78037 1.90883 1.11814 1.86715 1.58431 1.45128 1.09449 1.04802 1.81794 1.21110 0.94046 0.81062 1.02273 1.21788 0.98429 0.92882 1.03280 1.20479 0.95983 0.90834 1.03913 1.19612 0.98436 0.97328 0.92006 1.20863 0.97673 0.96184 0.98169 1.20437 0.99554 0.97080 0.95859 1.18907 0.95133 0.92579 0.93599 1.18877 0.98418 0.98059 0.83970 1.20341 0.96877 0.96555 0.99065 1.86324 1.74715 1.33541 1.27642 1.23631 0.96629 0.84174 1.01072 1.23632 0.93923 1.04213 0.83768 1.86309 1.53133 1.47229 1.35711 0.92840 0.95979 0.95967 0.92812 0.92821 0.77417 0.77284 0.91813 0.91778 0.90977 0.91036 0.90280 0.90112 0.84841 0.84794 0.84696 0.86020 0.90487 0.90417 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.40 5.56 -65.23 -0.36 -13.76 16 12 C 0.70 12.51 8.57 -86.92 -0.74 11.76 16 13 O -0.60 -13.22 16.34 5.29 0.09 -13.13 16 14 N -0.75 -9.63 5.56 -65.22 -0.36 -9.99 16 15 C 0.14 1.49 5.67 -4.04 -0.02 1.47 16 16 C -0.13 -0.93 5.31 -26.73 -0.14 -1.08 16 17 C -0.07 -0.49 5.34 -27.88 -0.15 -0.64 16 18 C -0.07 -0.56 5.13 -104.63 -0.54 -1.10 16 19 C -0.11 -0.81 9.69 -39.59 -0.38 -1.20 16 20 C -0.11 -0.90 9.96 -39.43 -0.39 -1.29 16 21 C 0.04 0.39 6.49 -39.14 -0.25 0.14 16 22 C 0.05 0.49 6.49 -39.14 -0.25 0.23 16 23 C -0.11 -0.95 9.62 -39.42 -0.38 -1.32 16 24 O -0.31 -2.71 10.42 -32.85 -0.34 -3.05 16 25 C 0.02 0.10 7.26 37.40 0.27 0.37 16 26 C 0.02 0.10 7.26 37.40 0.27 0.37 16 27 O -0.31 -2.63 10.42 -32.87 -0.34 -2.97 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.39 6.09 8.49 -40.82 -0.35 5.75 16 34 H 0.39 3.92 8.49 -40.82 -0.35 3.57 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 41 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -35.39 395.58 -10.35 -45.74 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.42 Total: 2.66 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.29 Total: -2.42 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.01 Total: -49.30 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.60 Total: -19.16 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.39 -10.35 -45.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343843755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.748 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.81 seconds