Wall clock time and date at job start Tue Mar 31 2020 21:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48499 * 109.46945 * 240.00058 * 3 2 1 5 5 H 1.48506 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47666 * 119.99175 * 3 2 1 7 7 C 1.37875 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00557 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47354 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47345 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00109 * 180.02562 * 11 10 9 13 13 O 1.21583 * 119.99919 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99868 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00072 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47130 * 179.97438 * 17 16 15 19 19 C 1.38245 * 119.94414 * 269.72151 * 18 17 16 20 20 C 1.38194 * 120.11209 * 179.77527 * 19 18 17 21 21 C 1.38696 * 120.06709 * 0.56953 * 20 19 18 22 22 C 1.38973 * 119.82304 * 359.61873 * 21 20 19 23 23 C 1.38197 * 119.94186 * 90.00068 * 18 17 16 24 24 O 1.36102 * 120.78860 * 180.26372 * 22 21 20 25 25 C 1.43177 * 116.71679 * 342.82184 * 24 22 21 26 26 C 1.53473 * 108.25134 * 46.15791 * 25 24 22 27 27 O 1.36109 * 119.39863 * 179.53576 * 21 20 19 28 28 H 0.97000 * 119.99960 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46988 * 60.00185 * 9 7 2 30 30 H 1.08995 * 109.47392 * 299.99853 * 9 7 2 31 31 H 1.09003 * 109.46554 * 60.00370 * 10 9 7 32 32 H 1.08995 * 109.47120 * 300.00471 * 10 9 7 33 33 H 0.97006 * 119.99928 * 359.97438 * 11 10 9 34 34 H 0.97001 * 120.00676 * 359.97438 * 14 12 11 35 35 H 1.09001 * 109.47060 * 300.00359 * 15 14 12 36 36 H 1.09004 * 109.47073 * 59.99848 * 15 14 12 37 37 H 1.09001 * 109.46832 * 299.99854 * 16 15 14 38 38 H 1.08996 * 109.46952 * 59.99873 * 16 15 14 39 39 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 40 40 H 1.09004 * 109.47298 * 59.99717 * 17 16 15 41 41 H 1.08004 * 119.94210 * 0.03312 * 19 18 17 42 42 H 1.08004 * 119.96444 * 180.29313 * 20 19 18 43 43 H 1.07997 * 119.96766 * 359.97438 * 23 18 17 44 44 H 1.08997 * 109.71057 * 165.84798 * 25 24 22 45 45 H 1.08995 * 109.70494 * 286.46878 * 25 24 22 46 46 H 1.08999 * 109.70887 * 59.94544 * 26 25 24 47 47 H 1.08996 * 109.71178 * 180.57827 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.4024 -6.0980 0.0017 14 7 1.5126 -7.2652 -0.0008 15 6 2.2451 -8.5340 -0.0009 16 6 1.2509 -9.6968 -0.0028 17 6 2.0158 -11.0219 -0.0023 18 6 1.0365 -12.1673 -0.0036 19 6 0.5912 -12.6958 1.1937 20 6 -0.3104 -13.7432 1.1966 21 6 -0.7619 -14.2746 -0.0023 22 6 -0.3114 -13.7459 -1.2060 23 6 0.5895 -12.6913 -1.2017 24 8 -0.7457 -14.2488 -2.3938 25 6 -1.3578 -15.5427 -2.3598 26 6 -2.3584 -15.5706 -1.1964 27 8 -1.6426 -15.3123 0.0164 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6043 0.8906 32 1 2.8719 -3.6043 -0.8894 33 1 0.5426 -4.9308 0.0000 34 1 0.5426 -7.2652 -0.0015 35 1 2.8725 -8.5912 -0.8904 36 1 2.8712 -8.5922 0.8896 37 1 0.6233 -9.6397 0.8865 38 1 0.6252 -9.6384 -0.8935 39 1 2.6437 -11.0792 -0.8915 40 1 2.6413 -11.0800 0.8885 41 1 0.9454 -12.2868 2.1284 42 1 -0.6603 -14.1511 2.1334 43 1 0.9421 -12.2793 -2.1357 44 1 -1.8802 -15.7270 -3.2984 45 1 -0.5951 -16.3062 -2.2070 46 1 -3.1174 -14.8027 -1.3459 47 1 -2.8319 -16.5508 -1.1422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343843755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:21 Heat of formation + Delta-G solvation = -123.303527 kcal Electronic energy + Delta-G solvation = -26649.032135 eV Core-core repulsion = 22602.657470 eV Total energy + Delta-G solvation = -4046.374665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 37.82 seconds Orbital eigenvalues (eV) -42.20170 -40.94406 -39.25281 -38.23249 -37.05306 -36.26547 -34.82652 -34.20695 -31.98642 -31.71118 -30.94399 -29.47519 -27.18553 -26.25286 -25.14093 -23.71973 -22.94490 -22.57370 -21.95628 -21.23644 -19.56500 -19.29018 -18.39553 -18.22398 -18.13729 -17.19833 -16.90498 -16.47892 -16.41886 -16.14271 -15.90570 -15.61390 -15.38710 -15.16994 -15.14476 -14.93809 -14.82684 -14.65927 -14.25628 -14.02046 -13.71164 -13.27953 -13.19650 -12.90159 -12.81479 -12.69508 -12.51914 -12.20382 -12.14118 -12.01168 -11.84135 -11.66122 -11.65054 -11.49155 -11.40842 -11.17957 -10.58298 -10.30207 -9.66815 -9.59200 -8.99197 -8.22060 -6.32377 0.27139 0.32392 1.43419 1.45967 1.53714 1.82691 2.06199 2.20563 2.31035 2.43270 2.69150 3.12728 3.29853 3.43856 3.67690 3.73899 3.92361 4.03849 4.07913 4.24875 4.27525 4.36231 4.39683 4.43435 4.50815 4.54431 4.57036 4.58655 4.69035 4.77121 4.88788 4.91599 4.98309 5.15708 5.18890 5.23740 5.31489 5.35830 5.53554 5.57817 5.61628 5.63944 5.72987 5.81063 5.92324 6.09766 6.19396 6.42004 6.80524 7.17442 7.36893 7.64070 8.89563 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.001391 C = 0.001365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.594091 B =20121.302798 C =20500.444886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.735 5.735 12 C 0.695 3.305 13 O -0.642 6.642 14 N -0.734 5.734 15 C 0.138 3.862 16 C -0.111 4.111 17 C -0.070 4.070 18 C -0.074 4.074 19 C -0.111 4.111 20 C -0.120 4.120 21 C 0.027 3.973 22 C 0.035 3.965 23 C -0.122 4.122 24 O -0.328 6.328 25 C 0.015 3.985 26 C 0.015 3.985 27 O -0.326 6.326 28 H 0.265 0.735 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.407 0.593 34 H 0.411 0.589 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.150 0.850 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 -36.626 -1.387 37.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.389 5.389 12 C 0.395 3.605 13 O -0.524 6.524 14 N -0.391 5.391 15 C 0.014 3.986 16 C -0.149 4.149 17 C -0.108 4.108 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.018 4.018 22 C -0.010 4.010 23 C -0.141 4.141 24 O -0.243 6.243 25 C -0.060 4.060 26 C -0.060 4.060 27 O -0.241 6.241 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.242 0.758 34 H 0.247 0.753 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.168 0.832 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.981 -36.569 -1.428 36.935 hybrid contribution -0.786 0.799 -0.245 1.147 sum -5.767 -35.770 -1.673 36.271 Atomic orbital electron populations 1.70050 1.07523 1.28017 1.50964 1.25860 0.95795 1.03049 0.94389 0.85499 0.78300 0.78126 0.79123 1.19378 1.20584 1.19334 1.21448 0.93626 0.91935 1.51640 0.92283 1.19134 0.94254 0.91670 0.96372 1.21060 0.94618 0.81191 0.99545 1.45228 1.10381 1.04492 1.78848 1.16210 0.85160 0.81371 0.77756 1.90854 1.13829 1.87406 1.60347 1.45007 1.10367 1.03879 1.79851 1.21272 0.94748 0.80875 1.01700 1.21669 0.97638 0.91726 1.03901 1.20455 0.95762 0.89840 1.04706 1.19708 0.98397 0.97482 0.91846 1.21129 0.97080 0.95739 0.98900 1.20704 0.99714 0.97363 0.96088 1.19151 0.95652 0.93027 0.93970 1.19085 0.98971 0.98595 0.84344 1.20530 0.97134 0.96732 0.99688 1.86280 1.75104 1.35187 1.27704 1.23926 0.96779 0.82749 1.02558 1.23915 0.93600 1.05806 0.82655 1.86273 1.53252 1.47048 1.37522 0.92576 0.97303 0.97248 0.93863 0.93929 0.75787 0.75320 0.92615 0.92221 0.90026 0.90733 0.89954 0.89004 0.82820 0.83695 0.84414 0.83213 0.90307 0.90513 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 2 C 0.01 0.44 5.46 84.66 0.46 0.91 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.16 7.10 5.61 86.38 0.48 7.58 16 11 N -0.73 -26.28 5.56 -478.55 -2.66 -28.94 16 12 C 0.70 24.43 8.57 179.06 1.53 25.97 16 13 O -0.64 -28.27 16.34 -3.98 -0.07 -28.33 16 14 N -0.73 -17.57 5.56 -478.53 -2.66 -20.23 16 15 C 0.14 2.73 5.67 86.38 0.49 3.22 16 16 C -0.11 -1.42 5.31 30.59 0.16 -1.26 16 17 C -0.07 -0.80 5.34 29.85 0.16 -0.64 16 18 C -0.07 -1.04 5.13 -19.87 -0.10 -1.14 16 19 C -0.11 -1.45 9.69 22.26 0.22 -1.23 16 20 C -0.12 -1.85 9.96 22.37 0.22 -1.62 16 21 C 0.03 0.49 6.49 22.56 0.15 0.63 16 22 C 0.03 0.65 6.49 22.56 0.15 0.80 16 23 C -0.12 -2.05 9.62 22.37 0.22 -1.83 16 24 O -0.33 -5.71 10.42 -82.48 -0.86 -6.57 16 25 C 0.01 0.13 7.26 72.14 0.52 0.66 16 26 C 0.01 0.13 7.26 72.14 0.52 0.66 16 27 O -0.33 -5.39 10.42 -82.57 -0.86 -6.25 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.41 12.25 8.49 -92.70 -0.79 11.46 16 34 H 0.41 7.25 8.49 -92.71 -0.79 6.46 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.90 8.08 -2.39 -0.02 0.89 16 40 H 0.09 0.87 8.08 -2.38 -0.02 0.85 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -76.32 395.58 0.19 -76.13 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.59 Total: 19.18 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.57 Total: 3.35 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -5.04 Total: -103.34 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.78 Total: -41.15 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -76.32 0.19 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343843755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.173 kcal (2) G-P(sol) polarization free energy of solvation -76.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.82 seconds