Wall clock time and date at job start Tue Mar 31 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47287 * 273.34913 * 3 2 1 5 5 H 1.48496 * 109.47097 * 33.34934 * 3 2 1 6 6 H 1.48500 * 109.47298 * 153.34979 * 3 2 1 7 7 C 1.38954 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99823 * 339.96644 * 7 2 1 9 9 N 1.37097 * 119.99949 * 159.96031 * 7 2 1 10 10 C 1.34774 * 120.00153 * 317.42524 * 9 7 2 11 11 O 1.21298 * 119.99988 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00280 * 179.97438 * 10 9 7 13 13 H 1.08995 * 110.76391 * 303.20600 * 12 10 9 14 14 C 1.55148 * 110.69928 * 66.40348 * 12 10 9 15 15 C 1.54909 * 101.64967 * 154.03703 * 14 12 10 16 16 N 1.47846 * 104.79641 * 322.92835 * 15 14 12 17 17 C 1.46897 * 110.99788 * 146.36542 * 16 15 14 18 18 C 1.52994 * 109.47596 * 49.15651 * 17 16 15 19 19 F 1.39906 * 109.47124 * 59.99863 * 18 17 16 20 20 F 1.39900 * 109.47623 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.47074 * 300.00267 * 18 17 16 22 22 C 1.47448 * 108.56532 * 24.09855 * 16 15 14 23 23 C 1.46497 * 119.99848 * 137.42101 * 9 7 2 24 24 C 1.54272 * 110.03166 * 62.92260 * 23 9 7 25 25 C 1.54959 * 104.15890 * 217.13487 * 24 23 9 26 26 C 1.54887 * 102.78135 * 37.88668 * 25 24 23 27 27 C 1.53873 * 110.03785 * 305.70232 * 23 9 7 28 28 H 0.96999 * 120.00133 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.98624 * 272.12467 * 14 12 10 30 30 H 1.08995 * 110.99411 * 35.94553 * 14 12 10 31 31 H 1.08994 * 110.37082 * 204.09578 * 15 14 12 32 32 H 1.09004 * 110.46679 * 81.80807 * 15 14 12 33 33 H 1.09000 * 109.47002 * 169.15650 * 17 16 15 34 34 H 1.09004 * 109.47538 * 289.15486 * 17 16 15 35 35 H 1.09005 * 109.88283 * 239.60056 * 22 16 15 36 36 H 1.09000 * 110.02041 * 118.49440 * 22 16 15 37 37 H 1.09001 * 110.01645 * 184.30965 * 23 9 7 38 38 H 1.08999 * 110.48331 * 335.78161 * 24 23 9 39 39 H 1.09000 * 110.48443 * 98.42459 * 24 23 9 40 40 H 1.09000 * 110.72352 * 279.57012 * 25 24 23 41 41 H 1.09003 * 110.76972 * 156.21823 * 25 24 23 42 42 H 1.08996 * 110.49037 * 203.40435 * 26 25 24 43 43 H 1.08998 * 110.48951 * 80.76014 * 26 25 24 44 44 H 1.08991 * 110.03566 * 238.57398 * 27 23 9 45 45 H 1.09006 * 110.02663 * 0.02562 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4248 2.0873 -1.3977 5 1 1.4828 2.6311 0.7697 6 1 3.5793 1.4207 0.6280 7 6 2.0089 -1.2034 -0.0005 8 1 1.5178 -2.1105 0.3195 9 7 3.3176 -1.2392 -0.4074 10 6 3.7040 -0.5452 -1.4962 11 8 2.8940 0.1115 -2.1159 12 6 5.1427 -0.5840 -1.9431 13 1 5.8054 -0.2585 -1.1413 14 6 5.5276 -2.0061 -2.4296 15 6 6.6822 -1.6977 -3.4153 16 7 6.2819 -0.4416 -4.0845 17 6 7.4552 0.3849 -4.3979 18 6 8.5112 -0.4729 -5.0977 19 9 7.9785 -0.9944 -6.2816 20 9 9.6283 0.3144 -5.3967 21 9 8.8920 -1.5230 -4.2554 22 6 5.3459 0.2817 -3.2042 23 6 4.2960 -2.0317 0.3414 24 6 3.9170 -3.5262 0.2887 25 6 4.2867 -4.0609 1.6953 26 6 3.8898 -2.8863 2.6236 27 6 4.2792 -1.6250 1.8253 28 1 -0.4850 0.8400 0.0004 29 1 5.8763 -2.6214 -1.6001 30 1 4.6926 -2.4825 -2.9432 31 1 6.7829 -2.5010 -4.1450 32 1 7.6181 -1.5579 -2.8743 33 1 7.1584 1.2031 -5.0541 34 1 7.8702 0.7913 -3.4755 35 1 4.3928 0.4242 -3.7138 36 1 5.7660 1.2484 -2.9267 37 1 5.2926 -1.8844 -0.0749 38 1 2.8489 -3.6426 0.1051 39 1 4.4952 -4.0396 -0.4796 40 1 5.3559 -4.2622 1.7626 41 1 3.7088 -4.9539 1.9336 42 1 4.4481 -2.9335 3.5586 43 1 2.8173 -2.8990 2.8176 44 1 5.2677 -1.2810 2.1294 45 1 3.5427 -0.8381 1.9884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348297980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:57 Heat of formation + Delta-G solvation = -162.556124 kcal Electronic energy + Delta-G solvation = -31199.006346 eV Core-core repulsion = 26609.072820 eV Total energy + Delta-G solvation = -4589.933526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.31866 -47.89929 -47.68567 -40.05171 -38.34050 -36.95431 -33.60421 -33.05932 -31.71502 -29.01045 -28.42018 -28.14552 -27.14711 -24.86392 -23.35233 -21.86996 -21.28701 -20.30591 -19.96968 -18.95011 -18.73904 -18.59456 -17.56329 -17.18395 -16.26898 -15.88429 -15.28239 -15.21368 -14.77983 -14.65719 -14.46972 -14.24780 -14.22757 -14.04897 -13.87506 -13.82871 -13.52656 -13.44042 -13.07731 -12.81804 -12.68750 -12.53297 -12.05056 -11.93064 -11.68364 -11.47160 -11.14537 -11.10544 -10.91381 -10.80989 -10.69477 -10.63446 -10.57698 -10.18272 -10.07525 -9.98079 -9.87345 -8.62375 -8.54887 -8.41180 -7.57197 -6.20003 -3.94323 2.52794 3.27236 3.40946 3.41167 3.60475 3.61454 3.77215 3.85438 4.23448 4.32241 4.52096 4.65680 4.81476 4.86721 5.04001 5.06472 5.08882 5.09531 5.27462 5.34025 5.39710 5.51893 5.60257 5.65592 5.75377 5.89172 5.92996 6.00091 6.03348 6.07579 6.11340 6.27116 6.29912 6.31519 6.42955 6.47075 6.69369 6.70054 6.72600 6.83448 6.93524 7.85221 8.00358 8.79167 8.92388 9.43999 9.82296 10.86119 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.004066 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.538550 B = 6884.091628 C = 8113.761607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.094 3.906 3 Si 0.902 3.098 4 H -0.253 1.253 5 H -0.308 1.308 6 H -0.281 1.281 7 C -0.340 4.340 8 H 0.094 0.906 9 N -0.453 5.453 10 C 0.457 3.543 11 O -0.541 6.541 12 C -0.128 4.128 13 H 0.086 0.914 14 C -0.116 4.116 15 C 0.020 3.980 16 N -0.519 5.519 17 C 0.003 3.997 18 C 0.455 3.545 19 F -0.173 7.173 20 F -0.186 7.186 21 F -0.181 7.181 22 C 0.059 3.941 23 C 0.124 3.876 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.131 4.131 28 H 0.271 0.729 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.536 -3.153 -3.016 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.115 4.115 3 Si 0.732 3.268 4 H -0.179 1.179 5 H -0.238 1.238 6 H -0.207 1.207 7 C -0.466 4.466 8 H 0.112 0.888 9 N -0.174 5.174 10 C 0.246 3.754 11 O -0.424 6.424 12 C -0.151 4.151 13 H 0.104 0.896 14 C -0.154 4.154 15 C -0.107 4.107 16 N -0.244 5.244 17 C -0.127 4.127 18 C 0.400 3.600 19 F -0.154 7.154 20 F -0.167 7.167 21 F -0.163 7.163 22 C -0.068 4.068 23 C 0.019 3.981 24 C -0.169 4.169 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.169 4.169 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.715 -2.864 -3.818 17.383 hybrid contribution 1.061 0.930 0.802 1.623 sum 17.776 -1.934 -3.016 18.133 Atomic orbital electron populations 1.69754 1.06796 1.28028 1.45462 1.25257 0.94796 0.99112 0.92320 0.86564 0.79053 0.82758 0.78415 1.17874 1.23757 1.20714 1.18634 0.84177 0.95846 1.47921 0.88808 1.43726 1.08437 1.43257 1.21952 1.19902 0.88790 0.84937 0.81789 1.90549 1.53428 1.43059 1.55324 1.22430 0.97510 0.97054 0.98124 0.89566 1.22847 0.98384 0.95562 0.98586 1.23703 0.98063 0.92121 0.96857 1.63890 1.11096 1.04597 1.44834 1.23536 0.90865 0.96335 1.01933 1.20523 0.82021 0.79438 0.77989 1.93216 1.85909 1.87634 1.48652 1.93185 1.55528 1.74304 1.93712 1.93147 1.92296 1.60149 1.70669 1.22828 0.97897 0.94725 0.91370 1.21908 0.92254 0.91612 0.92277 1.22728 1.03058 0.95043 0.96077 1.22448 1.00029 0.97806 0.95678 1.22262 1.01521 0.94519 0.97179 1.22420 1.00885 0.99070 0.94527 0.91911 0.89851 0.89713 0.89598 0.91484 0.86149 0.90219 0.87046 0.92396 0.90795 0.89858 0.92428 0.92264 0.92083 0.92709 0.91188 0.93001 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.96 55.50 0.77 -25.15 16 2 C 0.09 2.68 4.83 -17.47 -0.08 2.59 16 3 Si 0.90 23.39 24.92 -169.99 -4.24 19.15 16 4 H -0.25 -6.87 6.25 56.52 0.35 -6.51 16 5 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.34 -9.04 7.98 -14.93 -0.12 -9.16 16 8 H 0.09 2.64 7.09 -52.49 -0.37 2.27 16 9 N -0.45 -10.10 2.12 -106.54 -0.23 -10.32 16 10 C 0.46 10.20 5.27 -10.99 -0.06 10.14 16 11 O -0.54 -14.34 10.94 5.54 0.06 -14.28 16 12 C -0.13 -2.13 2.32 -89.95 -0.21 -2.34 16 13 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 14 C -0.12 -1.61 5.71 -24.59 -0.14 -1.75 16 15 C 0.02 0.24 4.87 -2.30 -0.01 0.23 16 16 N -0.52 -6.82 5.24 -231.25 -1.21 -8.03 16 17 C 0.00 0.03 4.99 -3.83 -0.02 0.01 16 18 C 0.45 4.79 3.05 37.15 0.11 4.91 16 19 F -0.17 -2.08 17.24 2.25 0.04 -2.04 16 20 F -0.19 -1.92 17.32 2.25 0.04 -1.88 16 21 F -0.18 -1.97 13.38 2.25 0.03 -1.94 16 22 C 0.06 0.91 6.29 -2.84 -0.02 0.89 16 23 C 0.12 2.16 2.55 -66.81 -0.17 1.99 16 24 C -0.13 -2.05 6.39 -25.03 -0.16 -2.21 16 25 C -0.12 -1.62 6.91 -24.70 -0.17 -1.79 16 26 C -0.12 -1.72 6.83 -25.07 -0.17 -1.89 16 27 C -0.13 -2.21 6.24 -25.61 -0.16 -2.37 16 28 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.08 1.02 5.97 -51.93 -0.31 0.71 16 30 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 31 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 32 H 0.07 0.74 5.98 -51.93 -0.31 0.43 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 35 H 0.11 2.07 6.81 -51.93 -0.35 1.72 16 36 H 0.06 0.80 7.50 -51.93 -0.39 0.41 16 37 H 0.07 1.12 4.34 -51.93 -0.23 0.90 16 38 H 0.08 1.55 6.66 -51.93 -0.35 1.21 16 39 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.72 7.15 -51.93 -0.37 1.35 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -31.28 347.60 -7.30 -38.58 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.43 Total: 1.44 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.38 Total: -0.75 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.66 Total: -43.51 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.06 Total: -14.28 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.11 Total: -5.86 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.24 Total: 19.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.28 -7.30 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348297980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.979 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds