Wall clock time and date at job start Tue Mar 31 2020 22:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47287 * 273.34913 * 3 2 1 5 5 H 1.48496 * 109.47097 * 33.34934 * 3 2 1 6 6 H 1.48500 * 109.47298 * 153.34979 * 3 2 1 7 7 C 1.38954 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99823 * 339.96644 * 7 2 1 9 9 N 1.37097 * 119.99949 * 159.96031 * 7 2 1 10 10 C 1.34774 * 120.00153 * 317.42524 * 9 7 2 11 11 O 1.21298 * 119.99988 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00280 * 179.97438 * 10 9 7 13 13 H 1.08995 * 110.76391 * 303.20600 * 12 10 9 14 14 C 1.55148 * 110.69928 * 66.40348 * 12 10 9 15 15 C 1.54909 * 101.64967 * 154.03703 * 14 12 10 16 16 N 1.47846 * 104.79641 * 322.92835 * 15 14 12 17 17 C 1.46897 * 110.99788 * 146.36542 * 16 15 14 18 18 C 1.52994 * 109.47596 * 49.15651 * 17 16 15 19 19 F 1.39906 * 109.47124 * 59.99863 * 18 17 16 20 20 F 1.39900 * 109.47623 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.47074 * 300.00267 * 18 17 16 22 22 C 1.47448 * 108.56532 * 24.09855 * 16 15 14 23 23 C 1.46497 * 119.99848 * 137.42101 * 9 7 2 24 24 C 1.54272 * 110.03166 * 62.92260 * 23 9 7 25 25 C 1.54959 * 104.15890 * 217.13487 * 24 23 9 26 26 C 1.54887 * 102.78135 * 37.88668 * 25 24 23 27 27 C 1.53873 * 110.03785 * 305.70232 * 23 9 7 28 28 H 0.96999 * 120.00133 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.98624 * 272.12467 * 14 12 10 30 30 H 1.08995 * 110.99411 * 35.94553 * 14 12 10 31 31 H 1.08994 * 110.37082 * 204.09578 * 15 14 12 32 32 H 1.09004 * 110.46679 * 81.80807 * 15 14 12 33 33 H 1.09000 * 109.47002 * 169.15650 * 17 16 15 34 34 H 1.09004 * 109.47538 * 289.15486 * 17 16 15 35 35 H 1.09005 * 109.88283 * 239.60056 * 22 16 15 36 36 H 1.09000 * 110.02041 * 118.49440 * 22 16 15 37 37 H 1.09001 * 110.01645 * 184.30965 * 23 9 7 38 38 H 1.08999 * 110.48331 * 335.78161 * 24 23 9 39 39 H 1.09000 * 110.48443 * 98.42459 * 24 23 9 40 40 H 1.09000 * 110.72352 * 279.57012 * 25 24 23 41 41 H 1.09003 * 110.76972 * 156.21823 * 25 24 23 42 42 H 1.08996 * 110.49037 * 203.40435 * 26 25 24 43 43 H 1.08998 * 110.48951 * 80.76014 * 26 25 24 44 44 H 1.08991 * 110.03566 * 238.57398 * 27 23 9 45 45 H 1.09006 * 110.02663 * 0.02562 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4248 2.0873 -1.3977 5 1 1.4828 2.6311 0.7697 6 1 3.5793 1.4207 0.6280 7 6 2.0089 -1.2034 -0.0005 8 1 1.5178 -2.1105 0.3195 9 7 3.3176 -1.2392 -0.4074 10 6 3.7040 -0.5452 -1.4962 11 8 2.8940 0.1115 -2.1159 12 6 5.1427 -0.5840 -1.9431 13 1 5.8054 -0.2585 -1.1413 14 6 5.5276 -2.0061 -2.4296 15 6 6.6822 -1.6977 -3.4153 16 7 6.2819 -0.4416 -4.0845 17 6 7.4552 0.3849 -4.3979 18 6 8.5112 -0.4729 -5.0977 19 9 7.9785 -0.9944 -6.2816 20 9 9.6283 0.3144 -5.3967 21 9 8.8920 -1.5230 -4.2554 22 6 5.3459 0.2817 -3.2042 23 6 4.2960 -2.0317 0.3414 24 6 3.9170 -3.5262 0.2887 25 6 4.2867 -4.0609 1.6953 26 6 3.8898 -2.8863 2.6236 27 6 4.2792 -1.6250 1.8253 28 1 -0.4850 0.8400 0.0004 29 1 5.8763 -2.6214 -1.6001 30 1 4.6926 -2.4825 -2.9432 31 1 6.7829 -2.5010 -4.1450 32 1 7.6181 -1.5579 -2.8743 33 1 7.1584 1.2031 -5.0541 34 1 7.8702 0.7913 -3.4755 35 1 4.3928 0.4242 -3.7138 36 1 5.7660 1.2484 -2.9267 37 1 5.2926 -1.8844 -0.0749 38 1 2.8489 -3.6426 0.1051 39 1 4.4952 -4.0396 -0.4796 40 1 5.3559 -4.2622 1.7626 41 1 3.7088 -4.9539 1.9336 42 1 4.4481 -2.9335 3.5586 43 1 2.8173 -2.8990 2.8176 44 1 5.2677 -1.2810 2.1294 45 1 3.5427 -0.8381 1.9884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348297980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:43 Heat of formation + Delta-G solvation = -183.492065 kcal Electronic energy + Delta-G solvation = -31199.914196 eV Core-core repulsion = 26609.072820 eV Total energy + Delta-G solvation = -4590.841376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 13.56 seconds Orbital eigenvalues (eV) -51.13460 -48.69907 -48.53235 -41.54816 -39.57147 -38.46792 -35.39253 -34.37586 -33.48567 -30.16301 -29.58240 -29.33417 -28.53923 -26.61746 -24.28385 -23.29312 -22.35098 -21.51776 -21.39127 -20.60407 -19.58118 -19.42527 -18.94497 -18.33036 -17.83554 -17.13179 -16.90516 -16.34047 -16.05995 -15.83711 -15.57200 -15.37731 -15.28934 -15.09272 -15.02951 -14.94491 -14.83300 -14.67943 -14.54225 -14.09527 -14.07109 -13.83844 -13.54904 -13.33678 -12.93968 -12.75864 -12.55035 -12.40244 -12.22765 -12.22032 -12.10709 -11.87537 -11.79886 -11.77374 -11.72851 -11.38815 -11.27777 -10.71105 -10.30138 -9.53501 -9.44081 -8.38074 -6.09437 1.21340 1.32556 1.48924 1.71090 1.97432 2.43970 2.46621 2.71066 2.80966 3.07181 3.10637 3.32966 3.54988 3.62983 3.81680 3.86967 3.94930 4.10685 4.18959 4.25767 4.29084 4.31073 4.36335 4.52392 4.59128 4.67971 4.76532 4.77987 4.86872 4.92511 4.95852 5.09099 5.12376 5.17713 5.19417 5.30422 5.44867 5.54822 5.62131 5.62596 5.75975 5.77768 5.96070 6.83479 6.97720 7.42709 7.94664 8.71958 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.004066 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.538550 B = 6884.091628 C = 8113.761607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.042 3.958 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.311 1.311 6 H -0.257 1.257 7 C -0.322 4.322 8 H 0.064 0.936 9 N -0.464 5.464 10 C 0.451 3.549 11 O -0.590 6.590 12 C -0.124 4.124 13 H 0.117 0.883 14 C -0.110 4.110 15 C 0.027 3.973 16 N -0.534 5.534 17 C 0.003 3.997 18 C 0.459 3.541 19 F -0.184 7.184 20 F -0.183 7.183 21 F -0.181 7.181 22 C 0.065 3.935 23 C 0.117 3.883 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.134 4.134 28 H 0.269 0.731 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.310 -3.869 -2.416 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.241 1.241 6 H -0.181 1.181 7 C -0.449 4.449 8 H 0.082 0.918 9 N -0.185 5.185 10 C 0.241 3.759 11 O -0.476 6.476 12 C -0.146 4.146 13 H 0.135 0.865 14 C -0.148 4.148 15 C -0.100 4.100 16 N -0.259 5.259 17 C -0.126 4.126 18 C 0.405 3.595 19 F -0.166 7.166 20 F -0.165 7.165 21 F -0.162 7.162 22 C -0.062 4.062 23 C 0.014 3.986 24 C -0.169 4.169 25 C -0.147 4.147 26 C -0.155 4.155 27 C -0.172 4.172 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.539 -3.613 -3.194 22.072 hybrid contribution -0.387 1.041 0.533 1.232 sum 21.152 -2.571 -2.661 21.473 Atomic orbital electron populations 1.69857 1.08179 1.28310 1.49130 1.25905 0.95263 1.01914 0.93017 0.85727 0.79186 0.79877 0.77053 1.20084 1.24051 1.18136 1.18452 0.86410 0.94231 1.45809 0.91821 1.43922 1.07816 1.43966 1.22832 1.20976 0.91115 0.82964 0.80796 1.90524 1.55618 1.44886 1.56539 1.22449 0.93298 0.99457 0.99416 0.86548 1.22838 0.98317 0.93949 0.99676 1.23726 0.97945 0.91720 0.96574 1.63729 1.12480 1.05200 1.44457 1.23637 0.89689 0.96023 1.03278 1.20517 0.82093 0.79337 0.77580 1.93200 1.86107 1.87836 1.49453 1.93194 1.55380 1.74203 1.93686 1.93138 1.92297 1.60249 1.70556 1.22597 0.97119 0.95832 0.90699 1.22281 0.92362 0.91574 0.92334 1.22705 1.00829 0.94499 0.98874 1.22433 1.02240 0.97126 0.92912 1.22256 1.00154 0.94331 0.98710 1.22459 1.01475 0.98785 0.94491 0.92220 0.87249 0.92259 0.89305 0.89113 0.85012 0.87749 0.91077 0.90471 0.87263 0.94111 0.89895 0.88702 0.91371 0.89748 0.94243 0.89607 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.17 13.96 21.66 0.30 -57.87 16 2 C 0.04 2.51 4.83 84.93 0.41 2.92 16 3 Si 0.95 49.84 24.92 68.60 1.71 51.55 16 4 H -0.27 -15.18 6.25 99.48 0.62 -14.56 16 5 H -0.31 -16.13 7.11 99.48 0.71 -15.42 16 6 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.32 -17.85 7.98 84.04 0.67 -17.18 16 8 H 0.06 3.84 7.09 -2.91 -0.02 3.82 16 9 N -0.46 -20.68 2.12 -609.37 -1.29 -21.97 16 10 C 0.45 19.94 5.27 87.66 0.46 20.40 16 11 O -0.59 -32.14 10.94 -3.09 -0.03 -32.18 16 12 C -0.12 -3.76 2.32 -10.36 -0.02 -3.78 16 13 H 0.12 2.90 7.58 -2.39 -0.02 2.88 16 14 C -0.11 -2.69 5.71 31.98 0.18 -2.51 16 15 C 0.03 0.55 4.87 86.77 0.42 0.97 16 16 N -0.53 -12.46 5.24 -885.55 -4.64 -17.10 16 17 C 0.00 0.05 4.99 86.30 0.43 0.48 16 18 C 0.46 8.12 3.05 71.98 0.22 8.34 16 19 F -0.18 -4.01 17.24 44.97 0.78 -3.23 16 20 F -0.18 -3.19 17.32 44.97 0.78 -2.41 16 21 F -0.18 -3.19 13.38 44.97 0.60 -2.59 16 22 C 0.06 1.88 6.29 86.64 0.55 2.43 16 23 C 0.12 3.80 2.55 45.72 0.12 3.91 16 24 C -0.13 -3.84 6.39 31.70 0.20 -3.64 16 25 C -0.11 -2.51 6.91 31.91 0.22 -2.29 16 26 C -0.12 -3.17 6.83 31.67 0.22 -2.95 16 27 C -0.13 -4.20 6.24 31.32 0.20 -4.00 16 28 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 29 H 0.11 2.09 5.97 -2.38 -0.01 2.08 16 30 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 31 H 0.09 1.82 7.87 -2.39 -0.02 1.80 16 32 H 0.09 1.48 5.98 -2.39 -0.01 1.47 16 33 H 0.13 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.10 1.29 7.96 -2.38 -0.02 1.27 16 35 H 0.07 2.67 6.81 -2.38 -0.02 2.66 16 36 H 0.08 1.90 7.50 -2.39 -0.02 1.88 16 37 H 0.11 2.75 4.34 -2.39 -0.01 2.74 16 38 H 0.04 1.55 6.66 -2.39 -0.02 1.53 16 39 H 0.08 1.99 7.68 -2.39 -0.02 1.97 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.04 1.71 7.15 -2.38 -0.02 1.69 16 Total: -1.00 -74.47 347.60 3.40 -71.06 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.93 Total: 11.65 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.27 Total: 3.09 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.63 Total: -96.94 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.03 Total: -32.18 kcal Atomic # 9 Polarization: -10.39 SS G_CDS: 2.16 Total: -8.23 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 1.71 Total: 51.55 kcal Total: -74.47 3.40 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348297980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.429 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.57 seconds