Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 N 1.46893 * 109.47050 * 239.99637 * 2 1 3 5 5 C 1.46905 * 110.99865 * 85.00222 * 4 2 1 6 6 C 1.50700 * 109.47152 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00065 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00303 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47562 * 89.99263 * 9 8 6 11 11 H 1.08007 * 119.99799 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00259 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99832 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00032 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47239 * 59.99946 * 14 12 10 16 16 H 1.48500 * 109.46975 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47093 * 299.99993 * 14 12 10 18 18 C 1.46498 * 120.00131 * 359.97438 * 8 6 5 19 19 C 1.53005 * 109.46936 * 90.00198 * 18 8 6 20 20 C 1.47199 * 109.47020 * 179.97438 * 19 18 8 21 21 N 6.96645 * 102.38249 * 316.25700 * 2 1 3 22 22 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 23 23 C 1.38238 * 120.40265 * 80.00353 * 22 2 1 24 24 N 1.31844 * 120.81693 * 179.97438 * 23 22 2 25 25 C 1.31870 * 121.75132 * 359.97438 * 24 23 22 26 26 C 1.38421 * 120.72962 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.44709 * 180.02562 * 26 25 24 28 28 C 1.38591 * 120.40344 * 259.72046 * 22 2 1 29 29 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 30 30 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.00903 * 111.00220 * 208.95333 * 4 2 1 33 33 H 1.09000 * 109.47027 * 299.99300 * 5 4 2 34 34 H 1.08993 * 109.47399 * 59.99689 * 5 4 2 35 35 H 1.08999 * 109.47611 * 209.99770 * 9 8 6 36 36 H 1.09007 * 109.46842 * 329.99770 * 9 8 6 37 37 H 0.97006 * 120.00068 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47311 * 209.99959 * 18 8 6 39 39 H 1.08995 * 109.47438 * 330.00496 * 18 8 6 40 40 H 1.08999 * 109.47373 * 300.00289 * 19 18 8 41 41 H 1.09005 * 109.46968 * 60.00444 * 19 18 8 42 42 H 1.07997 * 119.59079 * 359.97438 * 23 22 2 43 43 H 1.08002 * 119.64092 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.79830 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5216 -3.5557 7 8 2.8696 -1.6982 -3.4696 8 7 2.7296 0.1207 -4.7321 9 6 3.2210 -0.6028 -5.9074 10 6 2.0551 -1.1936 -6.6574 11 1 1.0486 -1.0446 -6.2951 12 6 2.2733 -1.9242 -7.8062 13 7 3.4989 -2.1060 -8.2470 14 14 0.8280 -2.6559 -8.7363 15 1 -0.0831 -1.5669 -9.1713 16 1 1.3262 -3.3893 -9.9276 17 1 0.0919 -3.5925 -7.8498 18 6 2.3906 1.5421 -4.8359 19 6 3.6271 2.3858 -4.5191 20 6 3.2866 3.8140 -4.6240 21 7 3.0239 4.9158 -4.7047 22 6 2.0323 -0.7104 1.2306 23 6 2.0704 -2.0915 1.2745 24 7 2.5087 -2.7214 2.3466 25 6 2.9263 -2.0679 3.4131 26 6 2.9188 -0.6841 3.4427 27 9 3.3485 -0.0203 4.5383 28 6 2.4672 0.0131 2.3297 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1206 -1.0286 33 1 1.0871 0.6162 -2.5526 34 1 2.7588 1.0461 -2.1182 35 1 3.7607 0.0851 -6.5582 36 1 3.8903 -1.4019 -5.5885 37 1 3.6524 -2.6197 -9.0555 38 1 2.0506 1.7616 -5.8479 39 1 1.5976 1.7793 -4.1267 40 1 3.9672 2.1663 -3.5070 41 1 4.4202 2.1487 -5.2283 42 1 1.7369 -2.6617 0.4200 43 1 3.2789 -2.6185 4.2728 44 1 2.4527 1.0930 2.3219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361133321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = -13.167458 kcal Electronic energy + Delta-G solvation = -27739.667669 eV Core-core repulsion = 23606.901308 eV Total energy + Delta-G solvation = -4132.766361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 8.75 seconds Orbital eigenvalues (eV) -49.32341 -40.63291 -39.38861 -37.11000 -36.73566 -35.25457 -33.14300 -32.76277 -31.50484 -30.89021 -29.70897 -27.94733 -26.04698 -24.29330 -24.09265 -24.01289 -22.45350 -21.00881 -18.78095 -17.93809 -17.65875 -17.55532 -17.11522 -16.50620 -16.45803 -16.19211 -16.10835 -15.45331 -14.84750 -14.76372 -14.47814 -14.33891 -14.18015 -13.99096 -13.78293 -13.46400 -13.33842 -13.06901 -12.78524 -12.74267 -12.49239 -12.41942 -12.17731 -12.01512 -11.90480 -11.76175 -11.49518 -11.29258 -11.03494 -10.88589 -10.62455 -10.20711 -10.15282 -9.89672 -9.74507 -9.24441 -9.07205 -8.59503 -8.48186 -7.88481 -6.10122 -4.14776 0.54917 0.69662 2.66865 2.74995 3.21369 3.26893 3.30100 3.34945 3.38146 3.42346 3.63305 3.93205 4.04109 4.21650 4.32109 4.36958 4.41866 4.55401 4.81847 4.84063 4.89476 4.96898 5.03840 5.11774 5.22773 5.25650 5.37096 5.38744 5.43470 5.47008 5.55521 5.64820 5.74022 5.76714 6.01246 6.04876 6.27628 6.64160 6.94346 7.17836 7.32373 7.39759 7.50970 7.51174 7.85778 8.15315 8.21718 8.81470 8.95657 9.50933 10.97997 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.002775 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.266280 B =10086.797703 C =11768.616474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.129 3.871 3 H 0.058 0.942 4 N -0.665 5.665 5 C 0.038 3.962 6 C 0.506 3.494 7 O -0.517 6.517 8 N -0.598 5.598 9 C 0.246 3.754 10 C -0.529 4.529 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.118 3.882 19 C -0.050 4.050 20 C 0.216 3.784 21 N -0.445 5.445 22 C -0.112 4.112 23 C 0.113 3.887 24 N -0.455 5.455 25 C 0.072 3.928 26 C 0.044 3.956 27 F -0.132 7.132 28 C -0.104 4.104 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.354 0.646 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.177 0.823 43 H 0.166 0.834 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 6.958 20.024 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.019 3.981 3 H 0.076 0.924 4 N -0.298 5.298 5 C -0.095 4.095 6 C 0.292 3.708 7 O -0.392 6.392 8 N -0.331 5.331 9 C 0.128 3.872 10 C -0.568 4.568 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.102 4.102 21 N -0.122 5.122 22 C -0.115 4.115 23 C -0.044 4.044 24 N -0.162 5.162 25 C -0.087 4.087 26 C 0.022 3.978 27 F -0.111 7.111 28 C -0.131 4.131 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.194 0.806 43 H 0.183 0.817 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.280 6.703 19.646 20.883 hybrid contribution 0.205 0.899 -0.164 0.936 sum -2.075 7.602 19.483 21.016 Atomic orbital electron populations 1.21828 0.92792 1.03316 1.01692 1.20420 0.96657 0.95109 0.85919 0.92434 1.60247 1.35149 1.31933 1.02508 1.22018 1.02356 0.94211 0.90888 1.20161 0.79118 0.87661 0.83881 1.90711 1.48995 1.15343 1.84139 1.48213 1.65041 1.08430 1.11370 1.19335 0.95286 0.92177 0.80447 1.21373 0.93360 1.33487 1.08568 0.92391 1.24910 0.95863 0.95905 0.97258 1.69905 1.19515 1.40493 1.23386 0.86577 0.82467 0.79382 0.79124 1.20285 1.21232 1.20092 1.21297 0.93850 0.81487 1.04264 1.19909 1.02083 0.81730 1.05476 1.29093 0.93255 0.94940 0.92889 1.81199 1.08860 1.12912 1.09220 1.20915 0.99191 0.95321 0.96030 1.23017 0.93877 0.91493 0.96059 1.67863 1.08820 1.39877 0.99602 1.22992 0.98038 0.89606 0.98046 1.18781 1.02147 0.91876 0.84956 1.91528 1.87428 1.80781 1.51329 1.21550 0.98068 1.01530 0.91976 0.92479 0.91673 0.91261 0.82547 0.88220 0.92751 0.94787 0.93575 0.92605 0.88684 0.90733 0.87793 0.86448 0.80622 0.81689 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.40 37.16 0.35 -0.76 16 2 C 0.13 1.07 2.84 -68.86 -0.20 0.88 16 3 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 4 N -0.66 -7.36 5.34 -109.22 -0.58 -7.94 16 5 C 0.04 0.42 4.52 -4.97 -0.02 0.40 16 6 C 0.51 8.58 7.71 -10.99 -0.08 8.49 16 7 O -0.52 -11.31 15.78 5.56 0.09 -11.22 16 8 N -0.60 -10.21 2.46 -175.06 -0.43 -10.64 16 9 C 0.25 5.63 5.16 -5.20 -0.03 5.60 16 10 C -0.53 -13.83 9.39 -34.44 -0.32 -14.15 16 11 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 14 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.12 1.43 5.17 -4.04 -0.02 1.41 16 19 C -0.05 -0.48 6.03 -29.52 -0.18 -0.65 16 20 C 0.22 2.42 15.43 -20.77 -0.32 2.10 16 21 N -0.44 -6.20 18.53 42.14 0.78 -5.42 16 22 C -0.11 -0.97 4.72 -104.49 -0.49 -1.47 16 23 C 0.11 1.15 10.18 -17.55 -0.18 0.97 16 24 N -0.45 -4.95 10.36 -13.20 -0.14 -5.09 16 25 C 0.07 0.65 11.17 -17.47 -0.20 0.46 16 26 C 0.04 0.39 7.35 -39.28 -0.29 0.10 16 27 F -0.13 -1.20 17.28 2.25 0.04 -1.16 16 28 C -0.10 -0.83 9.81 -39.21 -0.38 -1.22 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.35 4.20 7.70 -39.29 -0.30 3.89 16 33 H 0.10 1.01 6.70 -51.93 -0.35 0.66 16 34 H 0.05 0.46 7.10 -51.93 -0.37 0.09 16 35 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 40 H 0.10 0.76 7.22 -51.93 -0.37 0.39 16 41 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.18 1.84 7.72 -52.49 -0.41 1.43 16 43 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -32.79 386.46 -6.96 -39.76 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.80 Total: 0.61 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.46 Total: 3.77 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.37 Total: -53.57 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.79 -6.96 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361133321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.589 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.75 seconds