Wall clock time and date at job start Tue Mar 31 2020 19:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 N 1.46893 * 109.47050 * 239.99637 * 2 1 3 5 5 C 1.46905 * 110.99865 * 85.00222 * 4 2 1 6 6 C 1.50700 * 109.47152 * 179.97438 * 5 4 2 7 7 O 1.21281 * 120.00065 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00303 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47562 * 89.99263 * 9 8 6 11 11 H 1.08007 * 119.99799 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00259 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99832 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00032 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47239 * 59.99946 * 14 12 10 16 16 H 1.48500 * 109.46975 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47093 * 299.99993 * 14 12 10 18 18 C 1.46498 * 120.00131 * 359.97438 * 8 6 5 19 19 C 1.53005 * 109.46936 * 90.00198 * 18 8 6 20 20 C 1.47199 * 109.47020 * 179.97438 * 19 18 8 21 21 N 6.96645 * 102.38249 * 316.25700 * 2 1 3 22 22 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 23 23 C 1.38238 * 120.40265 * 80.00353 * 22 2 1 24 24 N 1.31844 * 120.81693 * 179.97438 * 23 22 2 25 25 C 1.31870 * 121.75132 * 359.97438 * 24 23 22 26 26 C 1.38421 * 120.72962 * 359.97438 * 25 24 23 27 27 F 1.35106 * 120.44709 * 180.02562 * 26 25 24 28 28 C 1.38591 * 120.40344 * 259.72046 * 22 2 1 29 29 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 30 30 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.00903 * 111.00220 * 208.95333 * 4 2 1 33 33 H 1.09000 * 109.47027 * 299.99300 * 5 4 2 34 34 H 1.08993 * 109.47399 * 59.99689 * 5 4 2 35 35 H 1.08999 * 109.47611 * 209.99770 * 9 8 6 36 36 H 1.09007 * 109.46842 * 329.99770 * 9 8 6 37 37 H 0.97006 * 120.00068 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47311 * 209.99959 * 18 8 6 39 39 H 1.08995 * 109.47438 * 330.00496 * 18 8 6 40 40 H 1.08999 * 109.47373 * 300.00289 * 19 18 8 41 41 H 1.09005 * 109.46968 * 60.00444 * 19 18 8 42 42 H 1.07997 * 119.59079 * 359.97438 * 23 22 2 43 43 H 1.08002 * 119.64092 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.79830 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1993 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5216 -3.5557 7 8 2.8696 -1.6982 -3.4696 8 7 2.7296 0.1207 -4.7321 9 6 3.2210 -0.6028 -5.9074 10 6 2.0551 -1.1936 -6.6574 11 1 1.0486 -1.0446 -6.2951 12 6 2.2733 -1.9242 -7.8062 13 7 3.4989 -2.1060 -8.2470 14 14 0.8280 -2.6559 -8.7363 15 1 -0.0831 -1.5669 -9.1713 16 1 1.3262 -3.3893 -9.9276 17 1 0.0919 -3.5925 -7.8498 18 6 2.3906 1.5421 -4.8359 19 6 3.6271 2.3858 -4.5191 20 6 3.2866 3.8140 -4.6240 21 7 3.0239 4.9158 -4.7047 22 6 2.0323 -0.7104 1.2306 23 6 2.0704 -2.0915 1.2745 24 7 2.5087 -2.7214 2.3466 25 6 2.9263 -2.0679 3.4131 26 6 2.9188 -0.6841 3.4427 27 9 3.3485 -0.0203 4.5383 28 6 2.4672 0.0131 2.3297 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9173 -1.1206 -1.0286 33 1 1.0871 0.6162 -2.5526 34 1 2.7588 1.0461 -2.1182 35 1 3.7607 0.0851 -6.5582 36 1 3.8903 -1.4019 -5.5885 37 1 3.6524 -2.6197 -9.0555 38 1 2.0506 1.7616 -5.8479 39 1 1.5976 1.7793 -4.1267 40 1 3.9672 2.1663 -3.5070 41 1 4.4202 2.1487 -5.2283 42 1 1.7369 -2.6617 0.4200 43 1 3.2789 -2.6185 4.2728 44 1 2.4527 1.0930 2.3219 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361133321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:55 Heat of formation + Delta-G solvation = -34.752118 kcal Electronic energy + Delta-G solvation = -27740.603650 eV Core-core repulsion = 23606.901308 eV Total energy + Delta-G solvation = -4133.702342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 23.78 seconds Orbital eigenvalues (eV) -50.00066 -41.34802 -40.65649 -38.04421 -37.64120 -36.58045 -34.85017 -33.72722 -32.29821 -32.06818 -30.44710 -29.42587 -27.23565 -25.27670 -25.13165 -24.78737 -23.91072 -21.69105 -20.00323 -18.90942 -18.50285 -18.35514 -18.27709 -17.86837 -17.51354 -17.21927 -16.83624 -16.67070 -16.18893 -15.70746 -15.59862 -15.32834 -15.15231 -14.78222 -14.71155 -14.35085 -14.22911 -14.08209 -14.07070 -13.62319 -13.50987 -13.49734 -13.29339 -13.18125 -12.95055 -12.84695 -12.67185 -12.57232 -12.45142 -12.21868 -12.13090 -11.79895 -11.64891 -10.82709 -10.60725 -10.55488 -10.45051 -9.91877 -9.46011 -9.31762 -8.15074 -6.26899 -0.13580 0.04217 1.42004 1.45150 1.51457 1.72757 1.87062 1.96854 2.28273 2.46109 2.57776 2.88673 3.11104 3.17169 3.29333 3.40931 3.62493 3.77732 3.84558 3.89798 4.09379 4.15794 4.19609 4.24552 4.36164 4.49632 4.55251 4.66379 4.74345 4.80942 4.88204 4.91912 5.02402 5.06919 5.09718 5.16387 5.38124 5.44432 5.59929 5.65028 5.89686 6.02079 6.17014 6.33172 6.63598 6.80297 6.81738 6.88512 7.38941 7.61164 8.91206 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.002775 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.266280 B =10086.797703 C =11768.616474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.136 3.864 3 H 0.086 0.914 4 N -0.684 5.684 5 C 0.051 3.949 6 C 0.499 3.501 7 O -0.577 6.577 8 N -0.599 5.599 9 C 0.261 3.739 10 C -0.538 4.538 11 H 0.054 0.946 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.955 3.045 15 H -0.263 1.263 16 H -0.284 1.284 17 H -0.279 1.279 18 C 0.113 3.887 19 C -0.038 4.038 20 C 0.246 3.754 21 N -0.490 5.490 22 C -0.108 4.108 23 C 0.099 3.901 24 N -0.482 5.482 25 C 0.065 3.935 26 C 0.040 3.960 27 F -0.133 7.133 28 C -0.095 4.095 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.347 0.653 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.163 0.837 43 H 0.183 0.817 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 9.228 21.444 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.026 3.974 3 H 0.104 0.896 4 N -0.318 5.318 5 C -0.080 4.080 6 C 0.288 3.712 7 O -0.456 6.456 8 N -0.331 5.331 9 C 0.140 3.860 10 C -0.577 4.577 11 H 0.072 0.928 12 C -0.188 4.188 13 N -0.567 5.567 14 Si 0.781 3.219 15 H -0.188 1.188 16 H -0.209 1.209 17 H -0.205 1.205 18 C -0.011 4.011 19 C -0.079 4.079 20 C -0.071 4.071 21 N -0.168 5.168 22 C -0.111 4.111 23 C -0.058 4.058 24 N -0.190 5.190 25 C -0.093 4.093 26 C 0.018 3.982 27 F -0.112 7.112 28 C -0.122 4.122 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.181 0.819 43 H 0.200 0.800 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.283 9.034 21.081 23.169 hybrid contribution 0.524 0.162 -0.553 0.779 sum -2.758 9.195 20.528 22.662 Atomic orbital electron populations 1.21838 0.92579 1.02489 1.02672 1.20463 0.96635 0.95969 0.84312 0.89588 1.60211 1.35054 1.32910 1.03604 1.21982 1.03895 0.94127 0.88039 1.21231 0.77688 0.87261 0.85043 1.90687 1.51466 1.18293 1.85177 1.48074 1.64784 1.10253 1.09961 1.18751 0.93656 0.91453 0.82158 1.21747 0.94059 1.33202 1.08679 0.92795 1.25709 0.98150 0.96541 0.98436 1.70014 1.21285 1.41506 1.23904 0.85649 0.79686 0.78801 0.77777 1.18771 1.20943 1.20517 1.21518 0.96072 0.78738 1.04792 1.19844 1.00599 0.79969 1.07473 1.29143 0.91886 0.94738 0.91359 1.81247 1.10249 1.14368 1.10944 1.20893 0.99075 0.94517 0.96597 1.22940 0.94596 0.92470 0.95764 1.67822 1.09938 1.40882 1.00370 1.23282 0.97701 0.90256 0.98062 1.18839 1.02267 0.91810 0.85247 1.91528 1.87473 1.80714 1.51451 1.21799 0.96587 1.02814 0.90982 0.90872 0.91266 0.93073 0.83300 0.86219 0.88603 0.94951 0.97937 0.92663 0.90086 0.87223 0.84450 0.86464 0.81933 0.80017 0.80851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.40 71.98 0.68 -1.14 16 2 C 0.14 1.82 2.84 44.17 0.13 1.94 16 3 H 0.09 0.73 7.69 -2.39 -0.02 0.71 16 4 N -0.68 -13.79 5.34 -499.46 -2.67 -16.45 16 5 C 0.05 0.98 4.52 85.56 0.39 1.36 16 6 C 0.50 16.43 7.71 87.66 0.68 17.11 16 7 O -0.58 -25.94 15.78 -3.03 -0.05 -25.98 16 8 N -0.60 -19.91 2.46 -826.17 -2.03 -21.94 16 9 C 0.26 12.22 5.16 85.63 0.44 12.67 16 10 C -0.54 -28.55 9.39 25.60 0.24 -28.31 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 12 C 0.01 0.58 5.46 84.66 0.46 1.05 16 13 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 14 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.11 2.45 5.17 86.38 0.45 2.90 16 19 C -0.04 -0.58 6.03 28.79 0.17 -0.41 16 20 C 0.25 4.77 15.43 89.45 1.38 6.15 16 21 N -0.49 -12.58 18.53 20.00 0.37 -12.21 16 22 C -0.11 -1.66 4.72 -19.78 -0.09 -1.75 16 23 C 0.10 2.01 10.18 84.69 0.86 2.87 16 24 N -0.48 -10.50 10.36 -195.66 -2.03 -12.52 16 25 C 0.07 1.13 11.17 84.73 0.95 2.08 16 26 C 0.04 0.62 7.35 22.47 0.17 0.79 16 27 F -0.13 -2.14 17.28 44.97 0.78 -1.36 16 28 C -0.10 -1.24 9.81 22.51 0.22 -1.02 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.86 7.45 -2.39 -0.02 0.85 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.35 7.91 7.70 -89.69 -0.69 7.22 16 33 H 0.12 1.87 6.70 -2.39 -0.02 1.85 16 34 H 0.10 1.08 7.10 -2.39 -0.02 1.06 16 35 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 36 H 0.00 0.14 7.42 -2.38 -0.02 0.12 16 37 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 39 H 0.11 1.64 6.44 -2.39 -0.02 1.62 16 40 H 0.14 1.31 7.22 -2.39 -0.02 1.29 16 41 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.16 3.60 7.72 -2.91 -0.02 3.58 16 43 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -75.36 386.46 4.15 -71.21 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.35 Total: 10.79 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.11 Total: 16.28 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -6.07 Total: -116.32 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -75.36 4.15 -71.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361133321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.460 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.78 seconds