Wall clock time and date at job start Tue Mar 31 2020 23:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46916 * 55.00165 * 10 9 7 12 12 N 1.46501 * 109.47225 * 295.00169 * 10 9 7 13 13 C 1.34769 * 120.00169 * 155.00091 * 12 10 9 14 14 O 1.21597 * 119.99961 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00305 * 179.97438 * 13 12 10 16 16 C 1.47422 * 125.64669 * 359.69375 * 15 13 12 17 17 C 1.55121 * 104.72480 * 155.81760 * 16 15 13 18 18 H 1.09007 * 111.19050 * 279.18957 * 17 16 15 19 19 O 1.42904 * 110.94166 * 155.28661 * 17 16 15 20 20 C 1.55155 * 101.48694 * 37.29341 * 17 16 15 21 21 C 1.47016 * 125.64999 * 179.97438 * 15 13 12 22 22 H 1.09005 * 109.88220 * 300.43649 * 21 15 13 23 23 C 1.52996 * 109.88468 * 61.60513 * 21 15 13 24 24 O 1.42901 * 109.46911 * 293.54567 * 23 21 15 25 25 C 1.50702 * 109.46895 * 174.99759 * 10 9 7 26 26 C 1.38230 * 119.99549 * 79.73121 * 25 10 9 27 27 C 1.38244 * 119.99798 * 179.78239 * 26 25 10 28 28 C 1.38232 * 119.99748 * 0.44590 * 27 26 25 29 29 C 1.38234 * 119.99991 * 359.80379 * 28 27 26 30 30 C 1.38233 * 120.00338 * 359.97438 * 29 28 27 31 31 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 33 33 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 34 34 H 0.97004 * 119.99795 * 334.99460 * 12 10 9 35 35 H 1.08999 * 110.36466 * 274.74852 * 16 15 13 36 36 H 1.09002 * 110.36604 * 37.06652 * 16 15 13 37 37 H 0.96698 * 113.99389 * 67.95666 * 19 17 16 38 38 H 1.09000 * 110.72207 * 205.97382 * 20 17 16 39 39 H 1.08997 * 110.87668 * 82.76785 * 20 17 16 40 40 H 1.08995 * 109.47271 * 53.54605 * 23 21 15 41 41 H 1.09001 * 109.47529 * 173.54965 * 23 21 15 42 42 H 0.96706 * 114.00028 * 180.02562 * 24 23 21 43 43 H 1.08001 * 120.00284 * 359.97438 * 26 25 10 44 44 H 1.07997 * 120.00298 * 180.27166 * 27 26 25 45 45 H 1.08001 * 120.00255 * 179.83231 * 28 27 26 46 46 H 1.08000 * 119.99889 * 180.02562 * 29 28 27 47 47 H 1.07994 * 120.00502 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5552 0.8424 12 7 3.0064 -3.6539 -1.2513 13 6 4.2310 -4.2145 -1.2990 14 8 4.7045 -4.7267 -0.3030 15 7 4.9310 -4.2075 -2.4508 16 6 4.4768 -3.6295 -3.7287 17 6 5.7823 -3.3114 -4.5037 18 1 6.2203 -2.3711 -4.1685 19 8 5.5474 -3.2902 -5.9131 20 6 6.6781 -4.5146 -4.1072 21 6 6.2715 -4.7799 -2.6423 22 1 6.9799 -4.2988 -1.9679 23 6 6.2368 -6.2863 -2.3769 24 8 5.9569 -6.5202 -0.9952 25 6 1.4959 -4.9636 0.1244 26 6 0.8896 -5.5204 -0.9861 27 6 0.2059 -6.7166 -0.8734 28 6 0.1209 -7.3513 0.3516 29 6 0.7229 -6.7919 1.4632 30 6 1.4104 -5.5981 1.3496 31 1 -0.4850 -0.8401 -0.0004 32 1 0.6241 -2.5566 0.8903 33 1 0.6247 -2.5571 -0.8897 34 1 2.6288 -3.2450 -2.0458 35 1 3.8731 -4.3517 -4.2783 36 1 3.9091 -2.7160 -3.5514 37 1 4.9922 -2.5556 -6.2082 38 1 7.7330 -4.2480 -4.1721 39 1 6.4618 -5.3819 -4.7309 40 1 5.4594 -6.7451 -2.9878 41 1 7.2030 -6.7224 -2.6307 42 1 5.9202 -7.4560 -0.7543 43 1 0.9526 -5.0224 -1.9423 44 1 -0.2641 -7.1539 -1.7419 45 1 -0.4155 -8.2845 0.4403 46 1 0.6568 -7.2880 2.4202 47 1 1.8804 -5.1608 2.2181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361474722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:58 Heat of formation + Delta-G solvation = -97.572647 kcal Electronic energy + Delta-G solvation = -30117.780098 eV Core-core repulsion = 26072.521207 eV Total energy + Delta-G solvation = -4045.258891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.99 seconds Orbital eigenvalues (eV) -40.27418 -39.07830 -37.82693 -36.64920 -35.37183 -34.95668 -32.92188 -31.75629 -30.54605 -30.10193 -29.36749 -28.35556 -25.32944 -24.52410 -22.59245 -22.31651 -21.98635 -21.37223 -20.02566 -19.23261 -17.94299 -17.69491 -17.00776 -16.76159 -16.45419 -16.33111 -15.28241 -15.06343 -14.79952 -14.38203 -14.13131 -13.96120 -13.76194 -13.71478 -13.41128 -13.26646 -13.02688 -12.85641 -12.74106 -12.42271 -12.14492 -12.00854 -11.66465 -11.63084 -11.39442 -11.23056 -10.96010 -10.75138 -10.70187 -10.59069 -10.38252 -10.19569 -10.01142 -9.80353 -9.36957 -8.79922 -8.53681 -8.45458 -8.40035 -8.17815 -8.13644 -6.40814 -4.11091 1.77131 1.79488 2.89534 3.39248 3.42822 3.60850 3.72166 3.86015 4.17571 4.27657 4.36201 4.48836 4.50546 4.73193 4.80047 5.04580 5.22933 5.24690 5.26207 5.28665 5.35736 5.36316 5.38576 5.44759 5.51975 5.55376 5.60337 5.74668 5.90000 5.92833 6.02269 6.11276 6.32573 6.37649 6.47954 6.53841 6.83080 6.84261 6.98188 7.05865 7.21853 7.32975 7.39550 7.42109 7.59357 7.86895 8.10775 8.42020 8.56019 8.82240 9.26967 9.60060 10.99103 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007190 B = 0.005494 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3893.475862 B = 5094.805970 C = 7776.243247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.596 4.596 8 H 0.051 0.949 9 C 0.011 3.989 10 C 0.212 3.788 11 H 0.086 0.914 12 N -0.718 5.718 13 C 0.716 3.284 14 O -0.551 6.551 15 N -0.633 5.633 16 C 0.068 3.932 17 C 0.094 3.906 18 H 0.079 0.921 19 O -0.558 6.558 20 C -0.117 4.117 21 C 0.161 3.839 22 H 0.081 0.919 23 C 0.067 3.933 24 O -0.526 6.526 25 C -0.071 4.071 26 C -0.106 4.106 27 C -0.126 4.126 28 C -0.135 4.135 29 C -0.122 4.122 30 C -0.106 4.106 31 H 0.269 0.731 32 H 0.025 0.975 33 H 0.013 0.987 34 H 0.392 0.608 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.384 0.616 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.361 0.639 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -12.402 -9.318 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.635 4.635 8 H 0.070 0.930 9 C -0.027 4.027 10 C 0.107 3.893 11 H 0.104 0.896 12 N -0.372 5.372 13 C 0.418 3.582 14 O -0.425 6.425 15 N -0.374 5.374 16 C -0.056 4.056 17 C 0.034 3.966 18 H 0.096 0.904 19 O -0.364 6.364 20 C -0.155 4.155 21 C 0.056 3.944 22 H 0.099 0.901 23 C -0.013 4.013 24 O -0.329 6.329 25 C -0.072 4.072 26 C -0.125 4.125 27 C -0.144 4.144 28 C -0.153 4.153 29 C -0.141 4.141 30 C -0.125 4.125 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.206 0.794 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.163 -10.987 -8.416 16.599 hybrid contribution -0.416 -1.616 -0.555 1.759 sum 8.747 -12.603 -8.972 17.772 Atomic orbital electron populations 1.70794 1.06859 1.30609 1.46426 1.25787 0.96479 1.02580 0.93830 0.83561 0.74864 0.75477 0.76536 1.20819 1.21427 1.21629 1.21951 0.94353 0.91346 1.55803 0.93043 1.19504 0.93906 0.92135 0.97121 1.19865 0.92553 0.90955 0.85951 0.89588 1.45106 1.16322 1.61519 1.14233 1.15497 0.80930 0.79655 0.82108 1.90970 1.69669 1.49527 1.32362 1.47423 1.18205 1.63004 1.08811 1.22962 0.97544 0.99171 0.85962 1.22933 0.94296 0.98546 0.80859 0.90352 1.86475 1.73981 1.54452 1.21443 1.22590 1.00138 0.98657 0.94097 1.21292 0.84894 0.92851 0.95387 0.90070 1.22498 0.98285 0.95555 0.84959 1.87073 1.94386 1.28349 1.23054 1.20626 0.96473 0.96840 0.93272 1.20861 0.97608 0.95610 0.98373 1.21023 1.00073 0.95990 0.97329 1.20977 1.01132 1.00015 0.93204 1.21034 0.98574 0.96181 0.98268 1.21011 0.98958 0.95087 0.97427 0.92089 0.95731 0.96888 0.77452 0.91189 0.90214 0.76795 0.89240 0.89479 0.94182 0.93666 0.79388 0.86938 0.86873 0.86875 0.86619 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.94 13.65 55.43 0.76 -26.19 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.60 -16.16 8.84 -34.44 -0.30 -16.46 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.01 0.26 3.80 -27.88 -0.11 0.15 16 10 C 0.21 4.53 2.11 -69.08 -0.15 4.38 16 11 H 0.09 2.05 7.44 -51.93 -0.39 1.66 16 12 N -0.72 -13.91 4.00 -59.81 -0.24 -14.15 16 13 C 0.72 13.94 8.19 -86.92 -0.71 13.23 16 14 O -0.55 -12.53 13.28 -18.84 -0.25 -12.78 16 15 N -0.63 -9.66 3.06 -168.56 -0.52 -10.18 16 16 C 0.07 0.81 6.32 -2.42 -0.02 0.80 16 17 C 0.09 0.93 4.44 -24.47 -0.11 0.82 16 18 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 19 O -0.56 -5.08 13.47 -35.23 -0.47 -5.56 16 20 C -0.12 -1.12 6.21 -24.90 -0.15 -1.27 16 21 C 0.16 2.07 3.30 -66.96 -0.22 1.85 16 22 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 23 C 0.07 0.82 6.47 37.16 0.24 1.06 16 24 O -0.53 -8.21 10.32 -59.36 -0.61 -8.82 16 25 C -0.07 -1.37 4.91 -104.62 -0.51 -1.88 16 26 C -0.11 -1.86 9.32 -39.58 -0.37 -2.23 16 27 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 28 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 29 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 30 C -0.11 -1.92 9.67 -39.58 -0.38 -2.30 16 31 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 32 H 0.02 0.64 8.01 -51.93 -0.42 0.23 16 33 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 34 H 0.39 7.11 7.08 -40.82 -0.29 6.82 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.97 7.29 -51.93 -0.38 0.60 16 37 H 0.38 2.05 9.12 45.56 0.42 2.47 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.79 7.85 -51.93 -0.41 0.39 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.36 4.12 9.12 45.56 0.42 4.54 16 43 H 0.11 1.89 7.73 -52.49 -0.41 1.48 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.12 2.10 8.04 -52.49 -0.42 1.68 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -35.43 385.85 -10.28 -45.71 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -5.59 Total: 14.88 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -4.08 Total: -8.46 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.00 Total: -50.52 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.34 Total: -27.16 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.43 -10.28 -45.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361474722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.864 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.99 seconds