Wall clock time and date at job start Tue Mar 31 2020 23:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46916 * 55.00165 * 10 9 7 12 12 N 1.46501 * 109.47225 * 295.00169 * 10 9 7 13 13 C 1.34769 * 120.00169 * 155.00091 * 12 10 9 14 14 O 1.21597 * 119.99961 * 359.97438 * 13 12 10 15 15 N 1.34778 * 120.00305 * 179.97438 * 13 12 10 16 16 C 1.47422 * 125.64669 * 359.69375 * 15 13 12 17 17 C 1.55121 * 104.72480 * 155.81760 * 16 15 13 18 18 H 1.09007 * 111.19050 * 279.18957 * 17 16 15 19 19 O 1.42904 * 110.94166 * 155.28661 * 17 16 15 20 20 C 1.55155 * 101.48694 * 37.29341 * 17 16 15 21 21 C 1.47016 * 125.64999 * 179.97438 * 15 13 12 22 22 H 1.09005 * 109.88220 * 300.43649 * 21 15 13 23 23 C 1.52996 * 109.88468 * 61.60513 * 21 15 13 24 24 O 1.42901 * 109.46911 * 293.54567 * 23 21 15 25 25 C 1.50702 * 109.46895 * 174.99759 * 10 9 7 26 26 C 1.38230 * 119.99549 * 79.73121 * 25 10 9 27 27 C 1.38244 * 119.99798 * 179.78239 * 26 25 10 28 28 C 1.38232 * 119.99748 * 0.44590 * 27 26 25 29 29 C 1.38234 * 119.99991 * 359.80379 * 28 27 26 30 30 C 1.38233 * 120.00338 * 359.97438 * 29 28 27 31 31 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 33 33 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 34 34 H 0.97004 * 119.99795 * 334.99460 * 12 10 9 35 35 H 1.08999 * 110.36466 * 274.74852 * 16 15 13 36 36 H 1.09002 * 110.36604 * 37.06652 * 16 15 13 37 37 H 0.96698 * 113.99389 * 67.95666 * 19 17 16 38 38 H 1.09000 * 110.72207 * 205.97382 * 20 17 16 39 39 H 1.08997 * 110.87668 * 82.76785 * 20 17 16 40 40 H 1.08995 * 109.47271 * 53.54605 * 23 21 15 41 41 H 1.09001 * 109.47529 * 173.54965 * 23 21 15 42 42 H 0.96706 * 114.00028 * 180.02562 * 24 23 21 43 43 H 1.08001 * 120.00284 * 359.97438 * 26 25 10 44 44 H 1.07997 * 120.00298 * 180.27166 * 27 26 25 45 45 H 1.08001 * 120.00255 * 179.83231 * 28 27 26 46 46 H 1.08000 * 119.99889 * 180.02562 * 29 28 27 47 47 H 1.07994 * 120.00502 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5552 0.8424 12 7 3.0064 -3.6539 -1.2513 13 6 4.2310 -4.2145 -1.2990 14 8 4.7045 -4.7267 -0.3030 15 7 4.9310 -4.2075 -2.4508 16 6 4.4768 -3.6295 -3.7287 17 6 5.7823 -3.3114 -4.5037 18 1 6.2203 -2.3711 -4.1685 19 8 5.5474 -3.2902 -5.9131 20 6 6.6781 -4.5146 -4.1072 21 6 6.2715 -4.7799 -2.6423 22 1 6.9799 -4.2988 -1.9679 23 6 6.2368 -6.2863 -2.3769 24 8 5.9569 -6.5202 -0.9952 25 6 1.4959 -4.9636 0.1244 26 6 0.8896 -5.5204 -0.9861 27 6 0.2059 -6.7166 -0.8734 28 6 0.1209 -7.3513 0.3516 29 6 0.7229 -6.7919 1.4632 30 6 1.4104 -5.5981 1.3496 31 1 -0.4850 -0.8401 -0.0004 32 1 0.6241 -2.5566 0.8903 33 1 0.6247 -2.5571 -0.8897 34 1 2.6288 -3.2450 -2.0458 35 1 3.8731 -4.3517 -4.2783 36 1 3.9091 -2.7160 -3.5514 37 1 4.9922 -2.5556 -6.2082 38 1 7.7330 -4.2480 -4.1721 39 1 6.4618 -5.3819 -4.7309 40 1 5.4594 -6.7451 -2.9878 41 1 7.2030 -6.7224 -2.6307 42 1 5.9202 -7.4560 -0.7543 43 1 0.9526 -5.0224 -1.9423 44 1 -0.2641 -7.1539 -1.7419 45 1 -0.4155 -8.2845 0.4403 46 1 0.6568 -7.2880 2.4202 47 1 1.8804 -5.1608 2.2181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361474722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:52 Heat of formation + Delta-G solvation = -123.387528 kcal Electronic energy + Delta-G solvation = -30118.899515 eV Core-core repulsion = 26072.521207 eV Total energy + Delta-G solvation = -4046.378308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55140 -40.34964 -39.05414 -37.65438 -36.83483 -36.20535 -34.90463 -33.09698 -31.81807 -31.33879 -30.33424 -30.15603 -26.52594 -26.17553 -24.09976 -23.76452 -23.30623 -22.31802 -21.42310 -20.61506 -19.35263 -18.74296 -18.50680 -18.04175 -17.84137 -17.50597 -16.57375 -16.47209 -16.01800 -15.69496 -15.42548 -15.26881 -15.19326 -15.03152 -14.77388 -14.53310 -14.30754 -14.12458 -14.08800 -13.70736 -13.67363 -13.35218 -13.18868 -12.95864 -12.59346 -12.52356 -12.35288 -12.23462 -12.05198 -11.94243 -11.82498 -11.75903 -11.24435 -10.89121 -10.85127 -10.80543 -10.56773 -10.00140 -9.81602 -9.59795 -9.45959 -8.67560 -6.38335 0.45352 0.49998 1.50322 1.57335 1.62401 1.77754 2.33516 2.53660 2.81862 2.93922 3.13271 3.20640 3.46294 3.55738 3.74480 3.92132 3.96240 3.99267 4.11230 4.14303 4.25378 4.27740 4.32458 4.39308 4.49424 4.53900 4.58423 4.63661 4.68037 4.69716 4.85073 4.87009 5.00221 5.10040 5.11824 5.12622 5.21083 5.36826 5.55680 5.57280 5.58884 5.85477 5.95201 6.10118 6.12379 6.17379 6.55923 6.79510 6.97503 7.10687 7.40589 7.77044 8.72609 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007190 B = 0.005494 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3893.475862 B = 5094.805970 C = 7776.243247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.030 4.030 3 Si 1.112 2.888 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.602 4.602 8 H 0.041 0.959 9 C 0.024 3.976 10 C 0.228 3.772 11 H 0.050 0.950 12 N -0.716 5.716 13 C 0.711 3.289 14 O -0.590 6.590 15 N -0.632 5.632 16 C 0.064 3.936 17 C 0.105 3.895 18 H 0.083 0.917 19 O -0.562 6.562 20 C -0.104 4.104 21 C 0.151 3.849 22 H 0.063 0.937 23 C 0.065 3.935 24 O -0.562 6.562 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.121 4.121 30 C -0.132 4.132 31 H 0.256 0.744 32 H -0.001 1.001 33 H 0.006 0.994 34 H 0.396 0.604 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.401 0.599 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.375 0.625 43 H 0.113 0.887 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.336 -13.707 -11.345 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.228 4.228 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.640 4.640 8 H 0.060 0.940 9 C -0.014 4.014 10 C 0.122 3.878 11 H 0.068 0.932 12 N -0.369 5.369 13 C 0.413 3.587 14 O -0.468 6.468 15 N -0.373 5.373 16 C -0.059 4.059 17 C 0.044 3.956 18 H 0.101 0.899 19 O -0.370 6.370 20 C -0.142 4.142 21 C 0.047 3.953 22 H 0.081 0.919 23 C -0.013 4.013 24 O -0.367 6.367 25 C -0.099 4.099 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.145 4.145 29 C -0.139 4.139 30 C -0.150 4.150 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.024 0.976 34 H 0.231 0.769 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.221 0.779 43 H 0.131 0.869 44 H 0.164 0.836 45 H 0.171 0.829 46 H 0.163 0.837 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.815 -12.308 -10.505 18.925 hybrid contribution -0.637 -1.298 0.068 1.448 sum 9.179 -13.606 -10.437 19.450 Atomic orbital electron populations 1.70919 1.07748 1.29898 1.48429 1.27194 0.96517 1.06210 0.92859 0.82987 0.74153 0.71663 0.77800 1.20715 1.20501 1.19147 1.22179 0.93977 0.92668 1.55148 0.94048 1.19279 0.93934 0.92770 0.95402 1.19341 0.91289 0.91416 0.85716 0.93164 1.44927 1.16623 1.61847 1.13544 1.15632 0.80787 0.79372 0.82920 1.90935 1.70436 1.51132 1.34251 1.47416 1.18760 1.62515 1.08561 1.23166 0.99085 0.98900 0.84780 1.22784 0.92763 0.98908 0.81115 0.89878 1.86448 1.74423 1.55641 1.20442 1.22574 1.01305 0.98916 0.91397 1.21593 0.83117 0.93190 0.97405 0.91896 1.22632 0.99996 0.95168 0.83543 1.87035 1.94708 1.29891 1.25059 1.20472 0.98111 0.96500 0.94789 1.20974 0.98290 0.96858 0.97697 1.21417 0.98916 0.94801 0.99024 1.21464 0.99853 1.00917 0.92221 1.21382 0.97348 0.94935 1.00220 1.21143 1.00389 0.96732 0.96776 0.93409 0.98232 0.97601 0.76917 0.90387 0.90884 0.74859 0.86898 0.88401 0.94040 0.90353 0.77851 0.86933 0.83633 0.82875 0.83718 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.65 21.45 0.29 -56.27 16 2 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 3 Si 1.11 50.12 29.90 68.60 2.05 52.17 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.60 -33.88 8.84 25.60 0.23 -33.65 16 8 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 9 C 0.02 1.22 3.80 29.85 0.11 1.33 16 10 C 0.23 10.43 2.11 44.25 0.09 10.53 16 11 H 0.05 2.61 7.44 -2.38 -0.02 2.60 16 12 N -0.72 -29.11 4.00 -461.40 -1.85 -30.96 16 13 C 0.71 28.78 8.19 179.06 1.47 30.24 16 14 O -0.59 -28.19 13.28 19.05 0.25 -27.94 16 15 N -0.63 -19.38 3.06 -805.47 -2.47 -21.85 16 16 C 0.06 1.48 6.32 86.93 0.55 2.03 16 17 C 0.10 1.83 4.44 32.06 0.14 1.97 16 18 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 19 O -0.56 -8.58 13.47 -148.98 -2.01 -10.59 16 20 C -0.10 -1.71 6.21 31.78 0.20 -1.52 16 21 C 0.15 3.77 3.30 45.34 0.15 3.92 16 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 23 C 0.07 1.54 6.47 71.98 0.47 2.00 16 24 O -0.56 -17.76 10.32 -125.91 -1.30 -19.06 16 25 C -0.10 -3.93 4.91 -19.87 -0.10 -4.03 16 26 C -0.12 -4.22 9.32 22.27 0.21 -4.01 16 27 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16 28 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 29 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 30 C -0.13 -4.95 9.67 22.27 0.22 -4.73 16 31 H 0.26 15.76 7.22 -92.71 -0.67 15.09 16 32 H 0.00 -0.03 8.01 -2.39 -0.02 -0.05 16 33 H 0.01 0.30 8.01 -2.38 -0.02 0.29 16 34 H 0.40 15.01 7.08 -92.71 -0.66 14.36 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 1.77 7.29 -2.39 -0.02 1.75 16 37 H 0.40 3.18 9.12 -74.06 -0.68 2.51 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.45 7.85 -2.39 -0.02 1.43 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.37 8.66 9.12 -74.05 -0.68 7.98 16 43 H 0.11 3.83 7.73 -2.91 -0.02 3.81 16 44 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 46 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 47 H 0.11 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -79.98 385.85 -1.06 -81.04 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -0.90 Total: 40.34 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.86 Total: -6.89 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.02 Total: -109.08 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -3.05 Total: -57.59 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -79.98 -1.06 -81.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361474722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.348 kcal (2) G-P(sol) polarization free energy of solvation -79.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds