Wall clock time and date at job start Tue Mar 31 2020 23:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 N 1.46500 * 109.47380 * 295.00724 * 10 9 7 13 13 C 1.34777 * 120.00041 * 154.99610 * 12 10 9 14 14 O 1.21583 * 119.99903 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99844 * 179.97438 * 13 12 10 16 16 C 1.47429 * 125.64719 * 359.69369 * 15 13 12 17 17 C 1.54694 * 104.93867 * 204.07413 * 16 15 13 18 18 H 1.08998 * 111.13012 * 205.09956 * 17 16 15 19 19 O 1.42895 * 110.81621 * 81.31932 * 17 16 15 20 20 C 1.55159 * 101.67727 * 323.27796 * 17 16 15 21 21 C 1.47019 * 125.64465 * 180.02562 * 15 13 12 22 22 H 1.08996 * 109.88517 * 59.33258 * 21 15 13 23 23 C 1.53000 * 109.88384 * 298.31766 * 21 15 13 24 24 O 1.42906 * 109.46750 * 66.45713 * 23 21 15 25 25 C 1.50696 * 109.47084 * 175.00039 * 10 9 7 26 26 C 1.38240 * 119.99875 * 79.73295 * 25 10 9 27 27 C 1.38232 * 119.99855 * 179.78730 * 26 25 10 28 28 C 1.38235 * 120.00189 * 0.46117 * 27 26 25 29 29 C 1.38234 * 119.99998 * 359.76617 * 28 27 26 30 30 C 1.38234 * 119.99917 * 0.02830 * 29 28 27 31 31 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 33 33 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 34 34 H 0.96997 * 119.99537 * 334.99782 * 12 10 9 35 35 H 1.08991 * 110.36629 * 323.00297 * 16 15 13 36 36 H 1.08996 * 110.36157 * 85.32755 * 16 15 13 37 37 H 0.96705 * 113.99937 * 67.80026 * 19 17 16 38 38 H 1.09005 * 110.72136 * 276.97666 * 20 17 16 39 39 H 1.08993 * 110.72259 * 153.69881 * 20 17 16 40 40 H 1.08996 * 109.47236 * 186.45922 * 23 21 15 41 41 H 1.09006 * 109.47465 * 306.46148 * 23 21 15 42 42 H 0.96702 * 113.99281 * 180.02562 * 24 23 21 43 43 H 1.07998 * 119.99524 * 359.97438 * 26 25 10 44 44 H 1.08003 * 119.99482 * 180.25588 * 27 26 25 45 45 H 1.08002 * 120.00020 * 179.79564 * 28 27 26 46 46 H 1.07994 * 120.00063 * 179.97438 * 29 28 27 47 47 H 1.07999 * 120.00096 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9296 -3.5514 0.8518 12 7 3.0064 -3.6593 -1.2414 13 6 4.2312 -4.2201 -1.2868 14 8 4.7042 -4.7286 -0.2888 15 7 4.9310 -4.2181 -2.4386 16 6 4.4766 -3.6458 -3.7190 17 6 5.2794 -4.4044 -4.8021 18 1 5.3736 -3.8093 -5.7104 19 8 4.6818 -5.6717 -5.0828 20 6 6.6556 -4.5803 -4.1074 21 6 6.2711 -4.7923 -2.6278 22 1 6.2544 -5.8571 -2.3955 23 6 7.2760 -4.0779 -1.7219 24 8 6.9702 -4.3612 -0.3550 25 6 1.4961 -4.9630 0.1401 26 6 0.8896 -5.5247 -0.9679 27 6 0.2060 -6.7204 -0.8498 28 6 0.1207 -7.3495 0.3782 29 6 0.7232 -6.7854 1.4871 30 6 1.4104 -5.5919 1.3682 31 1 -0.4850 0.8400 0.0004 32 1 0.6245 -2.5529 0.8956 33 1 0.6244 -2.5609 -0.8844 34 1 2.6288 -3.2540 -2.0376 35 1 3.4078 -3.8135 -3.8514 36 1 4.7023 -2.5803 -3.7596 37 1 3.8198 -5.6125 -5.5172 38 1 7.2637 -3.6831 -4.2234 39 1 7.1766 -5.4538 -4.4991 40 1 8.2829 -4.4281 -1.9490 41 1 7.2182 -3.0028 -1.8918 42 1 7.5681 -3.9394 0.2773 43 1 0.9526 -5.0309 -1.9263 44 1 -0.2643 -7.1613 -1.7163 45 1 -0.4162 -8.2819 0.4711 46 1 0.6562 -7.2766 2.4465 47 1 1.8808 -5.1509 2.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361474723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:26 Heat of formation + Delta-G solvation = -93.185990 kcal Electronic energy + Delta-G solvation = -30178.912854 eV Core-core repulsion = 26133.844183 eV Total energy + Delta-G solvation = -4045.068671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 16.31 seconds Orbital eigenvalues (eV) -40.20607 -38.97908 -37.73565 -36.50807 -35.11773 -34.72425 -32.68288 -31.68401 -30.43584 -30.00837 -29.46420 -28.58033 -25.31718 -24.79539 -22.54600 -22.16496 -21.85272 -21.24498 -19.80281 -19.09117 -17.93120 -17.66277 -16.89930 -16.59617 -16.08583 -15.73721 -15.48695 -14.80352 -14.71648 -14.52164 -14.45038 -14.07676 -13.79582 -13.69903 -13.20572 -12.99039 -12.83813 -12.70676 -12.44768 -12.26449 -12.06323 -12.02709 -11.67421 -11.43991 -11.20333 -11.08763 -11.03256 -10.83770 -10.67120 -10.55914 -10.40327 -10.32071 -9.73150 -9.66502 -9.26917 -9.21389 -8.46449 -8.40055 -8.32466 -8.10196 -8.00200 -6.06023 -4.08431 1.89066 1.91136 3.07562 3.26308 3.34193 3.38646 3.86347 3.97778 4.14873 4.29291 4.39300 4.41980 4.58391 4.69164 5.06207 5.08962 5.30235 5.32056 5.34703 5.35976 5.37567 5.44807 5.47590 5.49304 5.57726 5.60151 5.64737 5.72964 6.01528 6.04836 6.13999 6.26238 6.45325 6.49739 6.61668 6.70408 6.94445 6.95857 7.13000 7.24783 7.41698 7.50440 7.51631 7.61472 7.78880 7.91912 7.98206 8.31441 8.69496 8.97743 9.39944 9.55795 11.04660 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007260 B = 0.005365 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3856.012355 B = 5217.967778 C = 7351.087491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.204 3.796 11 H 0.085 0.915 12 N -0.719 5.719 13 C 0.716 3.284 14 O -0.554 6.554 15 N -0.630 5.630 16 C 0.069 3.931 17 C 0.092 3.908 18 H 0.080 0.920 19 O -0.555 6.555 20 C -0.118 4.118 21 C 0.164 3.836 22 H 0.078 0.922 23 C 0.064 3.936 24 O -0.527 6.527 25 C -0.069 4.069 26 C -0.105 4.105 27 C -0.126 4.126 28 C -0.136 4.136 29 C -0.123 4.123 30 C -0.107 4.107 31 H 0.261 0.739 32 H 0.034 0.966 33 H 0.022 0.978 34 H 0.391 0.609 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.381 0.619 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.362 0.638 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -9.767 -9.941 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.099 3.901 11 H 0.103 0.897 12 N -0.373 5.373 13 C 0.418 3.582 14 O -0.428 6.428 15 N -0.370 5.370 16 C -0.055 4.055 17 C 0.032 3.968 18 H 0.097 0.903 19 O -0.361 6.361 20 C -0.156 4.156 21 C 0.059 3.941 22 H 0.096 0.904 23 C -0.016 4.016 24 O -0.329 6.329 25 C -0.070 4.070 26 C -0.123 4.123 27 C -0.144 4.144 28 C -0.155 4.155 29 C -0.141 4.141 30 C -0.126 4.126 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.225 0.775 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.206 0.794 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.133 0.867 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.412 -10.584 -9.057 16.812 hybrid contribution 0.108 1.866 -0.518 1.939 sum 9.520 -8.719 -9.575 16.073 Atomic orbital electron populations 1.69960 1.05966 1.26668 1.50640 1.24984 0.94779 0.99120 0.95345 0.86613 0.79947 0.83575 0.77972 1.20827 1.21242 1.19926 1.21145 0.93089 0.90367 1.50660 0.92427 1.19389 0.93235 0.90305 0.98395 1.20054 0.92776 0.91420 0.85821 0.89687 1.45138 1.16208 1.61847 1.14100 1.15513 0.80787 0.79876 0.82064 1.90957 1.69162 1.50344 1.32331 1.47455 1.17807 1.63109 1.08649 1.22911 0.99667 0.98062 0.84891 1.22861 0.93008 0.84993 0.95924 0.90273 1.86522 1.38339 1.28726 1.82539 1.22671 0.95980 1.03747 0.93210 1.21227 0.81843 0.98297 0.92748 0.90400 1.22559 0.96295 0.98128 0.84611 1.87069 1.57092 1.74762 1.13985 1.20637 0.96383 0.96803 0.93215 1.20852 0.97553 0.95514 0.98423 1.21012 1.00105 0.96055 0.97244 1.20963 1.01230 1.00010 0.93255 1.21023 0.98666 0.96220 0.98240 1.21012 0.99023 0.95103 0.97450 0.92954 0.94777 0.95953 0.77535 0.90595 0.90839 0.77172 0.89090 0.88979 0.93889 0.94098 0.79364 0.86894 0.86923 0.86971 0.86716 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.85 8.84 -34.44 -0.30 -14.16 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.60 4.49 -27.88 -0.13 0.47 16 10 C 0.20 4.40 2.11 -69.08 -0.15 4.26 16 11 H 0.09 2.03 7.44 -51.92 -0.39 1.64 16 12 N -0.72 -14.04 4.00 -59.81 -0.24 -14.28 16 13 C 0.72 14.24 8.18 -86.92 -0.71 13.53 16 14 O -0.55 -12.92 13.29 -18.82 -0.25 -13.17 16 15 N -0.63 -9.85 3.07 -168.83 -0.52 -10.37 16 16 C 0.07 0.80 6.28 -2.64 -0.02 0.78 16 17 C 0.09 0.83 4.43 -24.70 -0.11 0.72 16 18 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 19 O -0.56 -5.58 13.46 -35.23 -0.47 -6.05 16 20 C -0.12 -1.09 6.22 -24.89 -0.15 -1.24 16 21 C 0.16 2.23 3.30 -66.95 -0.22 2.01 16 22 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 23 C 0.06 0.83 6.47 37.16 0.24 1.07 16 24 O -0.53 -8.74 10.33 -59.34 -0.61 -9.35 16 25 C -0.07 -1.37 4.91 -104.62 -0.51 -1.88 16 26 C -0.11 -1.89 9.32 -39.58 -0.37 -2.26 16 27 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 28 C -0.14 -2.09 10.05 -39.58 -0.40 -2.48 16 29 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 30 C -0.11 -2.00 9.67 -39.58 -0.38 -2.39 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.39 7.09 7.09 -40.82 -0.29 6.80 16 35 H 0.08 0.84 7.31 -51.93 -0.38 0.46 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.38 2.35 9.12 45.56 0.42 2.76 16 38 H 0.09 0.65 7.85 -51.93 -0.41 0.25 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.36 4.46 9.12 45.56 0.42 4.88 16 43 H 0.11 1.91 7.73 -52.49 -0.41 1.51 16 44 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.12 2.15 8.04 -52.49 -0.42 1.72 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -35.95 387.16 -10.30 -46.25 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.65 Total: 14.89 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.10 Total: -4.84 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.02 Total: -49.71 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.34 Total: -28.58 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.95 -10.30 -46.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361474723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.941 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.32 seconds