Wall clock time and date at job start Tue Mar 31 2020 23:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.09007 * 109.46773 * 55.00766 * 10 9 7 12 12 N 1.46500 * 109.47380 * 295.00724 * 10 9 7 13 13 C 1.34777 * 120.00041 * 154.99610 * 12 10 9 14 14 O 1.21583 * 119.99903 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99844 * 179.97438 * 13 12 10 16 16 C 1.47429 * 125.64719 * 359.69369 * 15 13 12 17 17 C 1.54694 * 104.93867 * 204.07413 * 16 15 13 18 18 H 1.08998 * 111.13012 * 205.09956 * 17 16 15 19 19 O 1.42895 * 110.81621 * 81.31932 * 17 16 15 20 20 C 1.55159 * 101.67727 * 323.27796 * 17 16 15 21 21 C 1.47019 * 125.64465 * 180.02562 * 15 13 12 22 22 H 1.08996 * 109.88517 * 59.33258 * 21 15 13 23 23 C 1.53000 * 109.88384 * 298.31766 * 21 15 13 24 24 O 1.42906 * 109.46750 * 66.45713 * 23 21 15 25 25 C 1.50696 * 109.47084 * 175.00039 * 10 9 7 26 26 C 1.38240 * 119.99875 * 79.73295 * 25 10 9 27 27 C 1.38232 * 119.99855 * 179.78730 * 26 25 10 28 28 C 1.38235 * 120.00189 * 0.46117 * 27 26 25 29 29 C 1.38234 * 119.99998 * 359.76617 * 28 27 26 30 30 C 1.38234 * 119.99917 * 0.02830 * 29 28 27 31 31 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 33 33 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 34 34 H 0.96997 * 119.99537 * 334.99782 * 12 10 9 35 35 H 1.08991 * 110.36629 * 323.00297 * 16 15 13 36 36 H 1.08996 * 110.36157 * 85.32755 * 16 15 13 37 37 H 0.96705 * 113.99937 * 67.80026 * 19 17 16 38 38 H 1.09005 * 110.72136 * 276.97666 * 20 17 16 39 39 H 1.08993 * 110.72259 * 153.69881 * 20 17 16 40 40 H 1.08996 * 109.47236 * 186.45922 * 23 21 15 41 41 H 1.09006 * 109.47465 * 306.46148 * 23 21 15 42 42 H 0.96702 * 113.99281 * 180.02562 * 24 23 21 43 43 H 1.07998 * 119.99524 * 359.97438 * 26 25 10 44 44 H 1.08003 * 119.99482 * 180.25588 * 27 26 25 45 45 H 1.08002 * 120.00020 * 179.79564 * 28 27 26 46 46 H 1.07994 * 120.00063 * 179.97438 * 29 28 27 47 47 H 1.07999 * 120.00096 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9296 -3.5514 0.8518 12 7 3.0064 -3.6593 -1.2414 13 6 4.2312 -4.2201 -1.2868 14 8 4.7042 -4.7286 -0.2888 15 7 4.9310 -4.2181 -2.4386 16 6 4.4766 -3.6458 -3.7190 17 6 5.2794 -4.4044 -4.8021 18 1 5.3736 -3.8093 -5.7104 19 8 4.6818 -5.6717 -5.0828 20 6 6.6556 -4.5803 -4.1074 21 6 6.2711 -4.7923 -2.6278 22 1 6.2544 -5.8571 -2.3955 23 6 7.2760 -4.0779 -1.7219 24 8 6.9702 -4.3612 -0.3550 25 6 1.4961 -4.9630 0.1401 26 6 0.8896 -5.5247 -0.9679 27 6 0.2060 -6.7204 -0.8498 28 6 0.1207 -7.3495 0.3782 29 6 0.7232 -6.7854 1.4871 30 6 1.4104 -5.5919 1.3682 31 1 -0.4850 0.8400 0.0004 32 1 0.6245 -2.5529 0.8956 33 1 0.6244 -2.5609 -0.8844 34 1 2.6288 -3.2540 -2.0376 35 1 3.4078 -3.8135 -3.8514 36 1 4.7023 -2.5803 -3.7596 37 1 3.8198 -5.6125 -5.5172 38 1 7.2637 -3.6831 -4.2234 39 1 7.1766 -5.4538 -4.4991 40 1 8.2829 -4.4281 -1.9490 41 1 7.2182 -3.0028 -1.8918 42 1 7.5681 -3.9394 0.2773 43 1 0.9526 -5.0309 -1.9263 44 1 -0.2643 -7.1613 -1.7163 45 1 -0.4162 -8.2819 0.4711 46 1 0.6562 -7.2766 2.4465 47 1 1.8808 -5.1509 2.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361474723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:17 Heat of formation + Delta-G solvation = -119.837096 kcal Electronic energy + Delta-G solvation = -30180.068532 eV Core-core repulsion = 26133.844183 eV Total energy + Delta-G solvation = -4046.224350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 16.08 seconds Orbital eigenvalues (eV) -41.46620 -40.27949 -38.99473 -37.58199 -36.63633 -35.93109 -34.68734 -33.04739 -31.75257 -31.26766 -30.42048 -30.41749 -26.75467 -26.18272 -23.89145 -23.71747 -23.24266 -22.16037 -21.26269 -20.48499 -19.15549 -18.68397 -18.44714 -18.02764 -17.60267 -16.94546 -16.83860 -16.53801 -16.09180 -15.95446 -15.37846 -15.17499 -15.08465 -14.90645 -14.68033 -14.37583 -14.19516 -14.06067 -13.96019 -13.62920 -13.41603 -13.34830 -12.94375 -12.89928 -12.62878 -12.60772 -12.44696 -12.22146 -12.12220 -11.86737 -11.79314 -11.57644 -11.32494 -11.23131 -10.79600 -10.77878 -10.57794 -9.90880 -9.74929 -9.52460 -9.32285 -8.20219 -6.30247 0.52374 0.56545 1.36763 1.39554 1.50143 1.77004 2.39116 2.44563 2.94265 3.11341 3.19625 3.23580 3.34246 3.64679 3.75865 4.02741 4.03794 4.14499 4.20636 4.27240 4.30878 4.31413 4.43198 4.46321 4.60002 4.66008 4.67476 4.72054 4.76293 4.79919 4.85346 4.94378 5.13478 5.17170 5.20035 5.31645 5.41595 5.49897 5.61394 5.63317 5.67809 5.78074 5.97365 6.17002 6.20517 6.24178 6.81392 6.89482 7.00118 7.22380 7.38439 7.88041 8.90610 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007260 B = 0.005365 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3856.012355 B = 5217.967778 C = 7351.087491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.041 3.959 10 C 0.222 3.778 11 H 0.050 0.950 12 N -0.715 5.715 13 C 0.709 3.291 14 O -0.597 6.597 15 N -0.630 5.630 16 C 0.058 3.942 17 C 0.102 3.898 18 H 0.120 0.880 19 O -0.576 6.576 20 C -0.108 4.108 21 C 0.153 3.847 22 H 0.046 0.954 23 C 0.060 3.940 24 O -0.565 6.565 25 C -0.097 4.097 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.130 4.130 29 C -0.124 4.124 30 C -0.134 4.134 31 H 0.264 0.736 32 H 0.003 0.997 33 H 0.010 0.990 34 H 0.397 0.603 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.374 0.626 43 H 0.116 0.884 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.144 0.856 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.796 -10.230 -12.355 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.116 3.884 11 H 0.068 0.932 12 N -0.369 5.369 13 C 0.411 3.589 14 O -0.475 6.475 15 N -0.369 5.369 16 C -0.065 4.065 17 C 0.042 3.958 18 H 0.138 0.862 19 O -0.385 6.385 20 C -0.145 4.145 21 C 0.049 3.951 22 H 0.064 0.936 23 C -0.018 4.018 24 O -0.370 6.370 25 C -0.099 4.099 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.148 4.148 29 C -0.142 4.142 30 C -0.153 4.153 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.029 0.971 34 H 0.231 0.769 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.246 0.754 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.221 0.779 43 H 0.134 0.866 44 H 0.164 0.836 45 H 0.170 0.830 46 H 0.162 0.838 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.012 -11.041 -11.534 18.846 hybrid contribution -0.101 1.930 0.248 1.948 sum 9.911 -9.111 -11.286 17.568 Atomic orbital electron populations 1.70072 1.07418 1.27729 1.51333 1.25776 0.95595 1.02601 0.94778 0.85565 0.78364 0.79149 0.78636 1.19196 1.20794 1.20014 1.21328 0.92732 0.91593 1.50692 0.93340 1.19112 0.93169 0.91207 0.96196 1.19499 0.91492 0.91702 0.85663 0.93177 1.44921 1.16383 1.62129 1.13428 1.15691 0.80700 0.79623 0.82935 1.90917 1.70037 1.52084 1.34415 1.47489 1.18365 1.62406 1.08664 1.23265 1.00445 0.98903 0.83889 1.22959 0.91803 0.84726 0.96270 0.86216 1.86491 1.39607 1.29530 1.82836 1.22739 0.96633 1.05650 0.89490 1.21520 0.81080 0.96421 0.96076 0.93606 1.22743 0.97825 0.98308 0.82957 1.87036 1.58468 1.75445 1.16029 1.20542 0.98003 0.96622 0.94707 1.21000 0.98142 0.96723 0.97881 1.21426 0.98985 0.94925 0.98923 1.21457 1.00044 1.00941 0.92356 1.21379 0.97538 0.95050 1.00199 1.21165 1.00459 0.96741 0.96908 0.92686 0.97843 0.97132 0.76860 0.90475 0.89940 0.75373 0.86245 0.87795 0.90503 0.93824 0.77931 0.86590 0.83571 0.83010 0.83845 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.53 -29.43 8.84 25.60 0.23 -29.20 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.04 2.13 4.49 29.85 0.13 2.27 16 10 C 0.22 10.30 2.11 44.25 0.09 10.40 16 11 H 0.05 2.63 7.44 -2.38 -0.02 2.61 16 12 N -0.71 -29.40 4.00 -461.41 -1.85 -31.25 16 13 C 0.71 29.51 8.18 179.05 1.47 30.98 16 14 O -0.60 -29.60 13.29 19.08 0.25 -29.34 16 15 N -0.63 -19.86 3.07 -806.32 -2.47 -22.33 16 16 C 0.06 1.26 6.28 86.78 0.55 1.81 16 17 C 0.10 1.52 4.43 31.91 0.14 1.66 16 18 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 19 O -0.58 -10.23 13.46 -148.98 -2.01 -12.24 16 20 C -0.11 -1.67 6.22 31.79 0.20 -1.47 16 21 C 0.15 4.10 3.30 45.34 0.15 4.25 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 C 0.06 1.55 6.47 71.98 0.47 2.01 16 24 O -0.56 -19.50 10.33 -125.93 -1.30 -20.80 16 25 C -0.10 -4.07 4.91 -19.87 -0.10 -4.17 16 26 C -0.12 -4.34 9.32 22.27 0.21 -4.13 16 27 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 28 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 29 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 30 C -0.13 -5.25 9.67 22.27 0.22 -5.03 16 31 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.40 15.00 7.09 -92.71 -0.66 14.35 16 35 H 0.08 1.64 7.31 -2.39 -0.02 1.62 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.40 3.97 9.12 -74.05 -0.68 3.30 16 38 H 0.12 1.21 7.85 -2.38 -0.02 1.19 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.37 9.74 9.12 -74.06 -0.68 9.06 16 43 H 0.12 4.01 7.73 -2.91 -0.02 3.99 16 44 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 45 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 46 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 47 H 0.11 4.33 8.04 -2.91 -0.02 4.30 16 Total: -1.00 -82.36 387.16 -1.19 -83.55 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -1.01 Total: 40.99 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 4.88 Total: -0.17 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.03 Total: -107.84 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -3.05 Total: -62.38 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -82.36 -1.19 -83.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361474723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.289 kcal (2) G-P(sol) polarization free energy of solvation -82.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.08 seconds