Wall clock time and date at job start Tue Mar 31 2020 20:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99786 * 2 1 4 4 C 1.50700 * 109.47492 * 293.95549 * 3 2 1 5 5 H 1.08005 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00106 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00434 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99902 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47244 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47212 * 120.00292 * 8 6 4 11 11 H 1.48502 * 109.47154 * 240.00282 * 8 6 4 12 12 C 1.46897 * 111.00440 * 123.95907 * 2 1 3 13 13 C 1.52995 * 109.47163 * 66.04188 * 12 2 1 14 14 H 1.08998 * 109.47433 * 305.00141 * 13 12 2 15 15 O 1.42902 * 109.47070 * 65.00649 * 13 12 2 16 16 C 1.53003 * 109.47064 * 185.00109 * 13 12 2 17 17 N 1.46503 * 109.47194 * 175.00215 * 16 13 12 18 18 C 1.35046 * 125.92617 * 125.00042 * 17 16 13 19 19 C 1.35065 * 107.98584 * 179.71348 * 18 17 16 20 20 C 1.40874 * 107.85278 * 0.26347 * 19 18 17 21 21 C 1.48345 * 126.04289 * 179.97438 * 20 19 18 22 22 C 1.39353 * 119.69837 * 179.72894 * 21 20 19 23 23 C 1.38347 * 119.09627 * 179.73072 * 22 21 20 24 24 C 1.39003 * 118.49129 * 0.53270 * 23 22 21 25 25 F 1.35098 * 120.33841 * 179.70863 * 24 23 22 26 26 C 1.38461 * 119.31634 * 359.72973 * 24 23 22 27 27 N 1.31764 * 120.85988 * 359.97438 * 26 24 23 28 28 N 1.31657 * 107.91491 * 0.02562 * 20 19 18 29 29 H 1.08993 * 109.46878 * 296.03951 * 1 2 3 30 30 H 1.08994 * 109.47251 * 56.04581 * 1 2 3 31 31 H 1.09001 * 109.46566 * 176.04694 * 1 2 3 32 32 H 1.09001 * 109.47265 * 53.95617 * 3 2 1 33 33 H 1.09007 * 109.47440 * 173.95547 * 3 2 1 34 34 H 0.96992 * 120.00504 * 180.02562 * 7 6 4 35 35 H 1.09010 * 109.46495 * 306.04487 * 12 2 1 36 36 H 1.08997 * 109.47184 * 186.05044 * 12 2 1 37 37 H 0.96703 * 113.99783 * 59.99857 * 15 13 12 38 38 H 1.09006 * 109.46843 * 55.00461 * 16 13 12 39 39 H 1.08996 * 109.47275 * 295.00637 * 16 13 12 40 40 H 1.08002 * 126.01034 * 359.97438 * 18 17 16 41 41 H 1.08000 * 126.07842 * 180.24639 * 19 18 17 42 42 H 1.08002 * 120.45110 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.75276 * 180.23997 * 23 22 21 44 44 H 1.08002 * 119.56749 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0267 3.3495 -1.5284 7 7 2.7119 4.0020 -0.6149 8 14 1.5816 4.1874 -3.1376 9 1 0.8135 3.2451 -3.9904 10 1 0.7541 5.3883 -2.8580 11 1 2.8230 4.5950 -3.8433 12 6 1.9956 -0.7660 1.1375 13 6 1.6316 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1802 16 6 2.0702 -3.0200 2.2129 17 7 1.6163 -4.4088 2.1056 18 6 2.3972 -5.5068 2.1964 19 6 1.6078 -6.5932 2.0520 20 6 0.2866 -6.1442 1.8584 21 6 -0.9062 -7.0027 1.6562 22 6 -2.1579 -6.4156 1.4821 23 6 -3.2611 -7.2279 1.2889 24 6 -3.0778 -8.6057 1.2874 25 9 -4.1299 -9.4339 1.1079 26 6 -1.8058 -9.1207 1.4720 27 7 -0.7724 -8.3223 1.6479 28 7 0.2977 -4.8280 1.8874 29 1 -0.3633 0.4511 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3632 -1.0253 -0.0708 32 1 1.5611 1.9273 0.8309 33 1 3.0798 1.3445 0.1082 34 1 2.9858 4.9183 -0.7765 35 1 1.5612 -0.3873 2.0628 36 1 3.0798 -0.6611 1.1755 37 1 3.2603 -2.7166 -0.1361 38 1 1.6332 -2.5625 3.1006 39 1 3.1572 -2.9978 2.2904 40 1 3.4647 -5.5151 2.3603 41 1 1.9317 -7.6231 2.0797 42 1 -2.2648 -5.3409 1.4937 43 1 -4.2431 -6.8012 1.1473 44 1 -1.6588 -10.1906 1.4720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414145553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:18 Heat of formation + Delta-G solvation = 30.795172 kcal Electronic energy + Delta-G solvation = -27255.030839 eV Core-core repulsion = 23124.170840 eV Total energy + Delta-G solvation = -4130.859998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.34681 -41.43612 -40.14026 -38.15807 -35.68610 -33.72904 -32.93555 -32.58227 -31.51050 -30.13467 -29.32410 -27.22667 -26.40983 -24.71764 -24.30734 -23.53450 -21.70925 -21.17919 -20.39466 -20.26258 -18.07842 -17.64822 -17.36517 -16.69886 -16.29040 -16.19866 -16.04907 -15.74138 -15.09426 -14.83787 -14.44557 -14.30378 -14.25880 -14.07182 -13.96769 -13.73387 -13.51002 -13.33746 -13.12309 -12.74230 -12.50600 -12.17335 -11.96406 -11.47587 -11.32177 -11.03231 -10.94399 -10.81321 -10.71806 -10.49239 -10.34317 -10.27675 -10.01578 -9.98670 -9.74653 -9.21175 -8.99609 -8.48239 -8.48011 -7.29192 -6.07220 -4.08184 0.26385 0.71467 1.78356 2.18625 2.54300 3.28787 3.36330 3.41968 3.51094 3.55891 3.74250 4.20043 4.22165 4.34425 4.36183 4.43500 4.46961 4.70105 4.74862 4.92176 5.11671 5.17175 5.25340 5.27927 5.31132 5.39930 5.42070 5.50854 5.55541 5.62562 5.85798 5.90201 6.09042 6.18093 6.20015 6.28230 6.37670 6.72300 6.82147 7.18948 7.25382 7.32041 7.54113 7.74405 7.81924 8.01942 8.12370 8.48417 9.00032 9.56365 11.03756 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002033 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.236919 B =13767.353691 C =14923.099066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.101 3.899 14 H 0.111 0.889 15 O -0.538 6.538 16 C 0.097 3.903 17 N -0.346 5.346 18 C 0.052 3.948 19 C -0.234 4.234 20 C 0.099 3.901 21 C 0.201 3.799 22 C -0.114 4.114 23 C -0.107 4.107 24 C 0.045 3.955 25 F -0.130 7.130 26 C 0.081 3.919 27 N -0.442 5.442 28 N -0.264 5.264 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.047 0.953 32 H -0.010 1.010 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.368 0.632 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.176 0.824 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -24.304 9.266 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.040 3.960 14 H 0.129 0.871 15 O -0.342 6.342 16 C -0.025 4.025 17 N -0.129 5.129 18 C -0.093 4.093 19 C -0.264 4.264 20 C -0.064 4.064 21 C 0.063 3.937 22 C -0.135 4.135 23 C -0.133 4.133 24 C 0.023 3.977 25 F -0.109 7.109 26 C -0.079 4.079 27 N -0.151 5.151 28 N -0.089 5.089 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.008 0.992 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.214 0.786 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.194 0.806 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.265 -23.618 8.720 25.721 hybrid contribution -0.321 0.687 0.119 0.768 sum -5.587 -22.930 8.839 25.202 Atomic orbital electron populations 1.22275 0.88794 0.99692 1.00594 1.62018 1.07005 1.17564 1.38736 1.19757 0.95269 0.81398 0.96778 1.21195 1.34709 0.96840 1.01646 0.91723 1.24998 0.95296 0.97361 0.97074 1.69960 1.38524 1.11416 1.34078 0.86429 0.78186 0.79281 0.83476 1.19608 1.21114 1.20981 1.22677 1.00737 0.93009 0.93988 1.22310 0.99172 0.91169 0.83323 0.87112 1.86695 1.22883 1.83738 1.40853 1.22706 1.00758 0.77447 1.01603 1.48483 1.04542 1.06231 1.53620 1.22528 0.98268 0.86188 1.02331 1.21402 0.91366 0.99824 1.13770 1.19950 0.92772 0.90429 1.03251 1.18548 0.90145 0.88603 0.96424 1.22115 0.91265 1.02338 0.97784 1.21660 1.01137 0.91542 0.99007 1.18896 0.85638 0.88760 1.04390 1.91529 1.55397 1.71255 1.92685 1.22827 0.86194 1.00922 0.97968 1.67525 1.32345 1.04051 1.11132 1.77451 0.98123 1.11127 1.22220 0.97144 0.90521 0.93437 0.99188 0.95315 0.92974 0.94953 0.90822 0.78570 0.88639 0.87867 0.80642 0.82902 0.82884 0.83074 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.15 60.07 0.55 1.23 16 2 N -0.53 -11.07 4.70 -244.37 -1.15 -12.22 16 3 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 4 C -0.51 -14.10 8.46 -34.44 -0.29 -14.39 16 5 H 0.06 1.81 7.12 -52.48 -0.37 1.44 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 C 0.03 0.41 4.59 -3.83 -0.02 0.39 16 13 C 0.10 1.36 3.04 -26.73 -0.08 1.28 16 14 H 0.11 1.72 6.24 -51.93 -0.32 1.40 16 15 O -0.54 -8.02 13.23 -35.23 -0.47 -8.49 16 16 C 0.10 0.95 6.14 -4.04 -0.02 0.93 16 17 N -0.35 -4.00 3.63 -61.40 -0.22 -4.22 16 18 C 0.05 0.51 11.42 -17.27 -0.20 0.31 16 19 C -0.23 -2.60 10.53 -39.71 -0.42 -3.02 16 20 C 0.10 1.27 7.01 -82.79 -0.58 0.69 16 21 C 0.20 2.33 6.75 -82.94 -0.56 1.77 16 22 C -0.11 -1.13 9.72 -39.13 -0.38 -1.51 16 23 C -0.11 -0.88 10.15 -39.26 -0.40 -1.28 16 24 C 0.05 0.39 7.34 -39.22 -0.29 0.10 16 25 F -0.13 -1.12 17.28 2.25 0.04 -1.08 16 26 C 0.08 0.69 11.16 -17.50 -0.20 0.50 16 27 N -0.44 -4.79 10.07 -9.72 -0.10 -4.89 16 28 N -0.26 -3.57 11.97 33.42 0.40 -3.17 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 31 H 0.05 0.83 6.37 -51.93 -0.33 0.49 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.03 0.49 8.12 -51.92 -0.42 0.07 16 36 H 0.07 1.10 7.93 -51.93 -0.41 0.68 16 37 H 0.37 4.13 9.05 45.56 0.41 4.55 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.15 1.44 7.84 -52.49 -0.41 1.03 16 43 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -34.07 381.06 -8.18 -42.25 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.14 Total: 1.90 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.00 Total: -6.71 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.33 Total: -50.17 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.47 Total: -8.49 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.07 -8.18 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414145553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.050 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds