Wall clock time and date at job start Tue Mar 31 2020 20:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99786 * 2 1 4 4 C 1.50700 * 109.47492 * 293.95549 * 3 2 1 5 5 H 1.08005 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00106 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00434 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99902 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47244 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47212 * 120.00292 * 8 6 4 11 11 H 1.48502 * 109.47154 * 240.00282 * 8 6 4 12 12 C 1.46897 * 111.00440 * 123.95907 * 2 1 3 13 13 C 1.52995 * 109.47163 * 66.04188 * 12 2 1 14 14 H 1.08998 * 109.47433 * 305.00141 * 13 12 2 15 15 O 1.42902 * 109.47070 * 65.00649 * 13 12 2 16 16 C 1.53003 * 109.47064 * 185.00109 * 13 12 2 17 17 N 1.46503 * 109.47194 * 175.00215 * 16 13 12 18 18 C 1.35046 * 125.92617 * 125.00042 * 17 16 13 19 19 C 1.35065 * 107.98584 * 179.71348 * 18 17 16 20 20 C 1.40874 * 107.85278 * 0.26347 * 19 18 17 21 21 C 1.48345 * 126.04289 * 179.97438 * 20 19 18 22 22 C 1.39353 * 119.69837 * 179.72894 * 21 20 19 23 23 C 1.38347 * 119.09627 * 179.73072 * 22 21 20 24 24 C 1.39003 * 118.49129 * 0.53270 * 23 22 21 25 25 F 1.35098 * 120.33841 * 179.70863 * 24 23 22 26 26 C 1.38461 * 119.31634 * 359.72973 * 24 23 22 27 27 N 1.31764 * 120.85988 * 359.97438 * 26 24 23 28 28 N 1.31657 * 107.91491 * 0.02562 * 20 19 18 29 29 H 1.08993 * 109.46878 * 296.03951 * 1 2 3 30 30 H 1.08994 * 109.47251 * 56.04581 * 1 2 3 31 31 H 1.09001 * 109.46566 * 176.04694 * 1 2 3 32 32 H 1.09001 * 109.47265 * 53.95617 * 3 2 1 33 33 H 1.09007 * 109.47440 * 173.95547 * 3 2 1 34 34 H 0.96992 * 120.00504 * 180.02562 * 7 6 4 35 35 H 1.09010 * 109.46495 * 306.04487 * 12 2 1 36 36 H 1.08997 * 109.47184 * 186.05044 * 12 2 1 37 37 H 0.96703 * 113.99783 * 59.99857 * 15 13 12 38 38 H 1.09006 * 109.46843 * 55.00461 * 16 13 12 39 39 H 1.08996 * 109.47275 * 295.00637 * 16 13 12 40 40 H 1.08002 * 126.01034 * 359.97438 * 18 17 16 41 41 H 1.08000 * 126.07842 * 180.24639 * 19 18 17 42 42 H 1.08002 * 120.45110 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.75276 * 180.23997 * 23 22 21 44 44 H 1.08002 * 119.56749 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0267 3.3495 -1.5284 7 7 2.7119 4.0020 -0.6149 8 14 1.5816 4.1874 -3.1376 9 1 0.8135 3.2451 -3.9904 10 1 0.7541 5.3883 -2.8580 11 1 2.8230 4.5950 -3.8433 12 6 1.9956 -0.7660 1.1375 13 6 1.6316 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1802 16 6 2.0702 -3.0200 2.2129 17 7 1.6163 -4.4088 2.1056 18 6 2.3972 -5.5068 2.1964 19 6 1.6078 -6.5932 2.0520 20 6 0.2866 -6.1442 1.8584 21 6 -0.9062 -7.0027 1.6562 22 6 -2.1579 -6.4156 1.4821 23 6 -3.2611 -7.2279 1.2889 24 6 -3.0778 -8.6057 1.2874 25 9 -4.1299 -9.4339 1.1079 26 6 -1.8058 -9.1207 1.4720 27 7 -0.7724 -8.3223 1.6479 28 7 0.2977 -4.8280 1.8874 29 1 -0.3633 0.4511 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3632 -1.0253 -0.0708 32 1 1.5611 1.9273 0.8309 33 1 3.0798 1.3445 0.1082 34 1 2.9858 4.9183 -0.7765 35 1 1.5612 -0.3873 2.0628 36 1 3.0798 -0.6611 1.1755 37 1 3.2603 -2.7166 -0.1361 38 1 1.6332 -2.5625 3.1006 39 1 3.1572 -2.9978 2.2904 40 1 3.4647 -5.5151 2.3603 41 1 1.9317 -7.6231 2.0797 42 1 -2.2648 -5.3409 1.4937 43 1 -4.2431 -6.8012 1.1473 44 1 -1.6588 -10.1906 1.4720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414145553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:17 Heat of formation + Delta-G solvation = 5.612710 kcal Electronic energy + Delta-G solvation = -27256.122832 eV Core-core repulsion = 23124.170840 eV Total energy + Delta-G solvation = -4131.951992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.02929 -42.23644 -40.87124 -39.42025 -37.19041 -34.65017 -34.57319 -33.64191 -32.38088 -30.93119 -30.54852 -29.02580 -27.68131 -26.05331 -25.04278 -24.62120 -23.05016 -22.08687 -21.68777 -21.20832 -18.82604 -18.62955 -18.33307 -18.06243 -17.51019 -17.17312 -16.87255 -16.71323 -16.57413 -16.16186 -15.79146 -15.43628 -15.15762 -15.10834 -14.91993 -14.62183 -14.55379 -14.41822 -14.08111 -13.84488 -13.82480 -13.27456 -13.23802 -13.05932 -12.78657 -12.64302 -12.57320 -12.45267 -12.10461 -11.88571 -11.62653 -11.49538 -11.14157 -11.04331 -10.71916 -10.69581 -10.63269 -9.80090 -9.28859 -8.98405 -8.22303 -6.31349 -0.48556 0.03187 0.99654 1.39332 1.40323 1.41756 1.53843 1.76941 2.39042 2.74430 2.82622 3.00478 3.10159 3.18457 3.45517 3.52543 3.69246 3.74727 3.79896 3.94572 4.02787 4.06480 4.20004 4.28723 4.45934 4.49602 4.56096 4.65793 4.69866 4.70192 4.76432 4.81703 4.87289 5.00098 5.06553 5.11983 5.16291 5.29759 5.49450 5.56783 5.63878 6.03409 6.09953 6.28427 6.54531 6.61717 6.76086 6.84426 6.91702 7.38235 8.88532 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002033 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.236919 B =13767.353691 C =14923.099066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.002 3.998 7 N -0.932 5.932 8 Si 0.966 3.034 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.026 3.974 13 C 0.115 3.885 14 H 0.087 0.913 15 O -0.561 6.561 16 C 0.103 3.897 17 N -0.354 5.354 18 C 0.064 3.936 19 C -0.254 4.254 20 C 0.086 3.914 21 C 0.178 3.822 22 C -0.122 4.122 23 C -0.101 4.101 24 C 0.045 3.955 25 F -0.129 7.129 26 C 0.082 3.918 27 N -0.457 5.457 28 N -0.301 5.301 29 H 0.014 0.986 30 H 0.053 0.947 31 H 0.068 0.932 32 H -0.036 1.036 33 H 0.010 0.990 34 H 0.265 0.735 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.384 0.616 38 H 0.106 0.894 39 H 0.142 0.858 40 H 0.218 0.782 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.175 0.825 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 -25.516 9.282 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.202 1.202 12 C -0.103 4.103 13 C 0.055 3.945 14 H 0.105 0.895 15 O -0.367 6.367 16 C -0.019 4.019 17 N -0.136 5.136 18 C -0.081 4.081 19 C -0.283 4.283 20 C -0.077 4.077 21 C 0.041 3.959 22 C -0.143 4.143 23 C -0.127 4.127 24 C 0.023 3.977 25 F -0.107 7.107 26 C -0.078 4.078 27 N -0.167 5.167 28 N -0.127 5.127 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.087 0.913 32 H -0.018 1.018 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.232 0.768 38 H 0.124 0.876 39 H 0.160 0.840 40 H 0.234 0.766 41 H 0.179 0.821 42 H 0.169 0.831 43 H 0.193 0.807 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.006 -24.845 8.746 26.811 hybrid contribution -0.422 0.965 0.140 1.062 sum -5.427 -23.881 8.887 26.052 Atomic orbital electron populations 1.22199 0.88140 1.00632 0.99773 1.61901 1.07738 1.15193 1.41795 1.19396 0.93930 0.83598 0.94831 1.21488 1.34709 0.97450 1.02478 0.92434 1.25862 0.95098 0.98049 1.00567 1.70064 1.39370 1.11876 1.35964 0.85377 0.78122 0.78174 0.79205 1.19172 1.20354 1.20241 1.22784 1.01237 0.93871 0.92435 1.22029 0.97883 0.89860 0.84744 0.89488 1.86652 1.24449 1.83757 1.41864 1.22712 1.03048 0.76474 0.99633 1.48606 1.04255 1.07008 1.53760 1.23165 0.99779 0.85038 1.00072 1.21656 0.91131 1.00819 1.14707 1.20303 0.93898 0.90543 1.02988 1.18701 0.90535 0.89058 0.97624 1.22140 0.91367 1.02477 0.98363 1.21902 1.01693 0.91427 0.97720 1.18948 0.85702 0.88885 1.04155 1.91537 1.55321 1.71212 1.92647 1.23281 0.85811 1.01981 0.96753 1.67532 1.33293 1.03941 1.11899 1.77391 0.99666 1.11705 1.23931 0.96730 0.92762 0.91316 1.01841 0.97153 0.92652 0.94058 0.89741 0.76757 0.87597 0.84017 0.76558 0.82106 0.83085 0.80735 0.78466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.15 127.69 1.17 2.78 16 2 N -0.54 -22.79 4.70 -927.06 -4.36 -27.15 16 3 C 0.21 10.84 4.72 85.56 0.40 11.24 16 4 C -0.52 -29.65 8.46 25.60 0.22 -29.43 16 5 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 6 C 0.00 0.13 5.46 84.65 0.46 0.59 16 7 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 8 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.03 0.79 4.59 86.30 0.40 1.19 16 13 C 0.12 2.95 3.04 30.59 0.09 3.05 16 14 H 0.09 2.67 6.24 -2.39 -0.01 2.65 16 15 O -0.56 -15.97 13.23 -148.98 -1.97 -17.94 16 16 C 0.10 1.77 6.14 86.38 0.53 2.30 16 17 N -0.35 -7.55 3.63 -348.17 -1.26 -8.81 16 18 C 0.06 1.11 11.42 83.47 0.95 2.06 16 19 C -0.25 -5.38 10.53 22.18 0.23 -5.15 16 20 C 0.09 2.18 7.01 42.51 0.30 2.48 16 21 C 0.18 4.15 6.75 41.98 0.28 4.43 16 22 C -0.12 -2.43 9.72 22.56 0.22 -2.21 16 23 C -0.10 -1.58 10.15 22.48 0.23 -1.35 16 24 C 0.05 0.72 7.34 22.51 0.17 0.88 16 25 F -0.13 -2.01 17.28 44.97 0.78 -1.23 16 26 C 0.08 1.31 11.16 84.76 0.95 2.26 16 27 N -0.46 -9.73 10.07 -184.68 -1.86 -11.59 16 28 N -0.30 -8.09 11.97 -48.18 -0.58 -8.67 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 31 H 0.07 2.39 6.37 -2.39 -0.02 2.37 16 32 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 33 H 0.01 0.57 7.93 -2.38 -0.02 0.55 16 34 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.04 1.21 8.12 -2.38 -0.02 1.19 16 36 H 0.08 2.39 7.93 -2.39 -0.02 2.37 16 37 H 0.38 7.86 9.05 -74.06 -0.67 7.19 16 38 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.14 1.35 8.07 -2.39 -0.02 1.33 16 40 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 42 H 0.15 2.97 7.84 -2.91 -0.02 2.94 16 43 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -75.07 381.06 0.02 -75.05 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.36 Total: 13.79 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 6.60 Total: -4.88 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -7.77 Total: -111.20 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.97 Total: -17.94 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.07 0.02 -75.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414145553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.665 kcal (2) G-P(sol) polarization free energy of solvation -75.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds