Wall clock time and date at job start Tue Mar 31 2020 19:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47214 * 2 1 4 4 C 1.38524 * 126.38169 * 89.99965 * 3 2 1 5 5 C 1.38681 * 133.89702 * 359.97438 * 4 3 2 6 6 C 1.37922 * 119.88229 * 180.02562 * 5 4 3 7 7 C 1.38917 * 120.41727 * 359.97438 * 6 5 4 8 8 F 1.35102 * 119.77593 * 180.02562 * 7 6 5 9 9 C 1.37837 * 120.45194 * 0.06615 * 7 6 5 10 10 C 1.39751 * 119.75921 * 359.91277 * 9 7 6 11 11 N 1.35838 * 133.39584 * 179.74227 * 10 9 7 12 12 C 1.30861 * 109.64293 * 179.91794 * 11 10 9 13 13 N 1.38465 * 125.05041 * 180.14637 * 12 11 10 14 14 C 1.34779 * 120.00081 * 0.27308 * 13 12 11 15 15 O 1.21267 * 120.00158 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99880 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.46894 * 40.00247 * 16 14 13 18 18 N 1.46905 * 109.47016 * 160.00220 * 16 14 13 19 19 C 1.53000 * 109.47387 * 280.00059 * 16 14 13 20 20 C 1.53006 * 109.46849 * 175.00069 * 19 16 14 21 21 C 1.50698 * 109.46632 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00384 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99877 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00224 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99936 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47304 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46722 * 120.00036 * 25 23 21 28 28 H 1.48498 * 109.47316 * 239.99787 * 25 23 21 29 29 H 1.08999 * 109.47466 * 300.00908 * 1 2 3 30 30 H 1.09000 * 109.46660 * 60.00420 * 1 2 3 31 31 H 1.08994 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47026 * 239.99257 * 2 1 3 33 33 H 1.09005 * 109.46374 * 119.99915 * 2 1 3 34 34 H 1.08004 * 120.05883 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.79123 * 180.02562 * 6 5 4 36 36 H 1.08002 * 120.12553 * 180.02562 * 9 7 6 37 37 H 0.97003 * 120.00119 * 180.26450 * 13 12 11 38 38 H 1.00898 * 111.00012 * 60.00121 * 18 16 14 39 39 H 1.00901 * 110.99824 * 183.95842 * 18 16 14 40 40 H 1.08995 * 109.46867 * 295.00230 * 19 16 14 41 41 H 1.09005 * 109.47063 * 55.00031 * 19 16 14 42 42 H 1.08992 * 109.47012 * 299.99751 * 20 19 16 43 43 H 1.08997 * 109.46888 * 60.00610 * 20 19 16 44 44 H 0.96995 * 120.00355 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2922 2.1558 1.1152 5 6 2.2137 1.9352 2.4821 6 6 2.5676 2.9372 3.3613 7 6 3.0034 4.1679 2.8867 8 9 3.3473 5.1401 3.7595 9 6 3.0865 4.4042 1.5313 10 6 2.7317 3.3981 0.6287 11 7 2.7024 3.3289 -0.7277 12 6 2.2890 2.1441 -1.0989 13 7 2.1425 1.7282 -2.4114 14 6 2.4401 2.5688 -3.4220 15 8 2.8358 3.6897 -3.1817 16 6 2.2811 2.1160 -4.8504 17 1 1.3711 1.5232 -4.9445 18 7 2.1939 3.2898 -5.7295 19 6 3.4876 1.2657 -5.2533 20 6 3.2685 0.7032 -6.6592 21 6 4.4566 -0.1348 -7.0557 22 1 5.2853 -0.2539 -6.3733 23 6 4.4862 -0.7485 -8.2900 24 7 3.4779 -0.6023 -9.1215 25 14 5.9593 -1.7867 -8.7817 26 1 6.9520 -1.7919 -7.6774 27 1 5.5157 -3.1774 -9.0545 28 1 6.5807 -1.2167 -10.0040 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 1.8761 0.9804 2.8575 35 1 2.5063 2.7636 4.4256 36 1 3.4264 5.3629 1.1681 37 1 1.8257 0.8317 -2.6037 38 1 3.0262 3.8559 -5.6603 39 1 2.0224 3.0141 -6.6848 40 1 4.3860 1.8828 -5.2447 41 1 3.6047 0.4436 -4.5472 42 1 2.3701 0.0862 -6.6677 43 1 3.1515 1.5254 -7.3652 44 1 3.4989 -1.0338 -9.9899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424171042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:17 Heat of formation + Delta-G solvation = -4.366218 kcal Electronic energy + Delta-G solvation = -28004.531652 eV Core-core repulsion = 23872.146942 eV Total energy + Delta-G solvation = -4132.384710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 12.27 seconds Orbital eigenvalues (eV) -48.98799 -42.49410 -39.89335 -37.46572 -35.74759 -35.21769 -34.59469 -32.94225 -31.46893 -30.01813 -29.67305 -28.97199 -26.83927 -24.58275 -24.26746 -22.91134 -22.68219 -21.21747 -20.40133 -20.02327 -18.53342 -17.87116 -17.27559 -17.16423 -16.35773 -16.22112 -15.92789 -15.58560 -15.26771 -14.96554 -14.67816 -14.58706 -14.47899 -14.31037 -14.06669 -13.50543 -13.45876 -13.30001 -13.20228 -13.06115 -12.54836 -12.29241 -12.03520 -11.84702 -11.73310 -11.63849 -11.20773 -11.03096 -10.74715 -10.64596 -10.30158 -10.24858 -10.10724 -9.83414 -9.41586 -9.30429 -8.52280 -8.37038 -8.35329 -8.05950 -6.16342 -4.19767 0.61500 1.07343 1.78819 2.28103 2.81989 2.98617 3.20955 3.29610 3.33091 3.54990 3.82064 4.11513 4.15996 4.32697 4.47968 4.53923 4.65334 4.69285 4.87176 4.88731 5.00193 5.02492 5.17217 5.20073 5.29145 5.37110 5.38041 5.54237 5.57817 5.61727 5.78047 5.91527 5.99676 6.11482 6.23719 6.36678 6.53519 6.73339 6.87194 6.90281 7.35950 7.42381 7.51012 7.76918 7.80562 7.81249 8.15117 8.22280 8.86310 9.45832 10.94485 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.002345 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.616945 B =11936.279966 C =12307.685478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 N -0.503 5.503 4 C 0.036 3.964 5 C -0.073 4.073 6 C -0.147 4.147 7 C 0.093 3.907 8 F -0.139 7.139 9 C -0.107 4.107 10 C 0.096 3.904 11 N -0.477 5.477 12 C 0.526 3.474 13 N -0.643 5.643 14 C 0.522 3.478 15 O -0.457 6.457 16 C 0.084 3.916 17 H 0.102 0.898 18 N -0.829 5.829 19 C -0.140 4.140 20 C 0.024 3.976 21 C -0.525 4.525 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.418 0.582 38 H 0.349 0.651 39 H 0.359 0.641 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 0.452 22.883 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.201 5.201 4 C -0.072 4.072 5 C -0.094 4.094 6 C -0.167 4.167 7 C 0.072 3.928 8 F -0.118 7.118 9 C -0.128 4.128 10 C -0.024 4.024 11 N -0.204 5.204 12 C 0.172 3.828 13 N -0.297 5.297 14 C 0.308 3.692 15 O -0.322 6.322 16 C -0.031 4.031 17 H 0.120 0.880 18 N -0.363 5.363 19 C -0.179 4.179 20 C -0.013 4.013 21 C -0.563 4.563 22 H 0.074 0.926 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.256 0.744 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.273 2.048 22.671 23.897 hybrid contribution 1.240 -2.236 -0.326 2.577 sum -6.033 -0.187 22.345 23.146 Atomic orbital electron populations 1.22220 0.93893 1.03513 1.03518 1.21861 0.95806 0.79269 1.05045 1.45266 1.57716 1.13151 1.03940 1.18627 1.06781 0.92968 0.88785 1.19636 1.01923 0.99630 0.88179 1.20731 1.03680 0.91902 1.00390 1.17126 1.02784 0.86526 0.86411 1.91496 1.90152 1.61672 1.68476 1.20028 1.03311 0.99750 0.89714 1.18618 1.01210 0.92489 0.90105 1.71156 1.25116 1.14828 1.09317 1.19733 0.95010 0.86279 0.81805 1.43037 1.67450 1.18826 1.00418 1.21316 0.76590 0.84776 0.86563 1.90801 1.39435 1.18349 1.83622 1.21443 1.01386 0.93032 0.87281 0.88024 1.58718 1.45478 1.19288 1.12790 1.22446 0.95452 0.98267 1.01762 1.19112 0.97551 0.95910 0.88690 1.21193 1.03877 1.30300 1.00946 0.92636 1.25009 0.96181 0.96568 0.96521 1.69946 1.30664 1.43980 1.08496 0.86529 0.82780 0.80070 0.78607 1.19750 1.20931 1.20878 0.91617 0.91685 0.90051 0.88830 0.88510 0.85170 0.84162 0.83981 0.74424 0.83786 0.82490 0.92253 0.92529 0.96220 0.96216 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.16 0.38 -0.54 16 2 C 0.10 0.63 6.66 -4.05 -0.03 0.60 16 3 N -0.50 -5.34 2.83 -114.95 -0.33 -5.67 16 4 C 0.04 0.42 6.88 -83.84 -0.58 -0.16 16 5 C -0.07 -0.63 10.04 -39.53 -0.40 -1.03 16 6 C -0.15 -1.28 10.01 -39.45 -0.39 -1.68 16 7 C 0.09 1.02 7.28 -39.48 -0.29 0.74 16 8 F -0.14 -1.56 17.26 2.25 0.04 -1.52 16 9 C -0.11 -1.37 10.07 -39.16 -0.39 -1.77 16 10 C 0.10 1.39 7.22 -84.69 -0.61 0.77 16 11 N -0.48 -8.10 9.36 -11.42 -0.11 -8.21 16 12 C 0.53 7.35 8.38 -319.44 -2.68 4.68 16 13 N -0.64 -8.16 5.38 -12.60 -0.07 -8.22 16 14 C 0.52 8.31 7.04 -10.99 -0.08 8.23 16 15 O -0.46 -9.00 14.87 5.57 0.08 -8.92 16 16 C 0.08 1.30 3.21 -68.86 -0.22 1.08 16 17 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 18 N -0.83 -13.29 8.94 -5.65 -0.05 -13.34 16 19 C -0.14 -2.51 4.78 -26.73 -0.13 -2.64 16 20 C 0.02 0.56 4.74 -27.88 -0.13 0.42 16 21 C -0.53 -13.80 9.11 -34.44 -0.31 -14.11 16 22 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 25 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.46 7.45 -51.93 -0.39 0.08 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.42 3.75 7.86 -40.82 -0.32 3.43 16 38 H 0.35 5.72 8.58 -39.29 -0.34 5.39 16 39 H 0.36 5.70 7.55 -39.29 -0.30 5.41 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.79 377.53 -10.87 -44.66 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.89 Total: 8.19 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -5.95 Total: -3.90 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.19 Total: -59.85 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.79 -10.87 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424171042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.294 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.27 seconds