Wall clock time and date at job start Tue Mar 31 2020 19:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47214 * 2 1 4 4 C 1.38524 * 126.38169 * 89.99965 * 3 2 1 5 5 C 1.38681 * 133.89702 * 359.97438 * 4 3 2 6 6 C 1.37922 * 119.88229 * 180.02562 * 5 4 3 7 7 C 1.38917 * 120.41727 * 359.97438 * 6 5 4 8 8 F 1.35102 * 119.77593 * 180.02562 * 7 6 5 9 9 C 1.37837 * 120.45194 * 0.06615 * 7 6 5 10 10 C 1.39751 * 119.75921 * 359.91277 * 9 7 6 11 11 N 1.35838 * 133.39584 * 179.74227 * 10 9 7 12 12 C 1.30861 * 109.64293 * 179.91794 * 11 10 9 13 13 N 1.38465 * 125.05041 * 180.14637 * 12 11 10 14 14 C 1.34779 * 120.00081 * 0.27308 * 13 12 11 15 15 O 1.21267 * 120.00158 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99880 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.46894 * 40.00247 * 16 14 13 18 18 N 1.46905 * 109.47016 * 160.00220 * 16 14 13 19 19 C 1.53000 * 109.47387 * 280.00059 * 16 14 13 20 20 C 1.53006 * 109.46849 * 175.00069 * 19 16 14 21 21 C 1.50698 * 109.46632 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00384 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99877 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00224 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99936 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47304 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46722 * 120.00036 * 25 23 21 28 28 H 1.48498 * 109.47316 * 239.99787 * 25 23 21 29 29 H 1.08999 * 109.47466 * 300.00908 * 1 2 3 30 30 H 1.09000 * 109.46660 * 60.00420 * 1 2 3 31 31 H 1.08994 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47026 * 239.99257 * 2 1 3 33 33 H 1.09005 * 109.46374 * 119.99915 * 2 1 3 34 34 H 1.08004 * 120.05883 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.79123 * 180.02562 * 6 5 4 36 36 H 1.08002 * 120.12553 * 180.02562 * 9 7 6 37 37 H 0.97003 * 120.00119 * 180.26450 * 13 12 11 38 38 H 1.00898 * 111.00012 * 60.00121 * 18 16 14 39 39 H 1.00901 * 110.99824 * 183.95842 * 18 16 14 40 40 H 1.08995 * 109.46867 * 295.00230 * 19 16 14 41 41 H 1.09005 * 109.47063 * 55.00031 * 19 16 14 42 42 H 1.08992 * 109.47012 * 299.99751 * 20 19 16 43 43 H 1.08997 * 109.46888 * 60.00610 * 20 19 16 44 44 H 0.96995 * 120.00355 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2922 2.1558 1.1152 5 6 2.2137 1.9352 2.4821 6 6 2.5676 2.9372 3.3613 7 6 3.0034 4.1679 2.8867 8 9 3.3473 5.1401 3.7595 9 6 3.0865 4.4042 1.5313 10 6 2.7317 3.3981 0.6287 11 7 2.7024 3.3289 -0.7277 12 6 2.2890 2.1441 -1.0989 13 7 2.1425 1.7282 -2.4114 14 6 2.4401 2.5688 -3.4220 15 8 2.8358 3.6897 -3.1817 16 6 2.2811 2.1160 -4.8504 17 1 1.3711 1.5232 -4.9445 18 7 2.1939 3.2898 -5.7295 19 6 3.4876 1.2657 -5.2533 20 6 3.2685 0.7032 -6.6592 21 6 4.4566 -0.1348 -7.0557 22 1 5.2853 -0.2539 -6.3733 23 6 4.4862 -0.7485 -8.2900 24 7 3.4779 -0.6023 -9.1215 25 14 5.9593 -1.7867 -8.7817 26 1 6.9520 -1.7919 -7.6774 27 1 5.5157 -3.1774 -9.0545 28 1 6.5807 -1.2167 -10.0040 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 1.8761 0.9804 2.8575 35 1 2.5063 2.7636 4.4256 36 1 3.4264 5.3629 1.1681 37 1 1.8257 0.8317 -2.6037 38 1 3.0262 3.8559 -5.6603 39 1 2.0224 3.0141 -6.6848 40 1 4.3860 1.8828 -5.2447 41 1 3.6047 0.4436 -4.5472 42 1 2.3701 0.0862 -6.6677 43 1 3.1515 1.5254 -7.3652 44 1 3.4989 -1.0338 -9.9899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424171042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:10 Heat of formation + Delta-G solvation = -24.863221 kcal Electronic energy + Delta-G solvation = -28005.420469 eV Core-core repulsion = 23872.146942 eV Total energy + Delta-G solvation = -4133.273527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -49.86328 -43.39976 -41.11429 -38.34211 -37.15878 -36.02630 -35.70960 -34.84329 -32.16547 -31.70776 -30.45905 -29.90785 -28.28438 -26.17230 -24.84910 -24.03076 -23.64283 -22.47376 -21.58974 -21.12589 -19.56148 -18.81914 -18.55757 -18.03750 -17.98625 -17.20511 -16.84155 -16.59643 -16.47874 -16.23474 -15.83241 -15.76502 -15.69169 -15.37619 -14.86460 -14.73490 -14.68501 -14.20290 -14.14904 -14.04938 -13.79524 -13.49981 -13.03805 -13.01349 -12.86700 -12.71327 -12.51852 -12.46387 -12.22084 -11.83281 -11.78598 -11.46671 -11.29145 -11.27822 -11.14391 -10.67863 -10.55636 -9.71038 -9.20946 -9.00802 -8.21299 -6.30714 -0.25297 0.23011 0.86327 1.18127 1.38502 1.41478 1.52023 1.93604 1.96111 2.40054 2.64710 2.90953 3.13073 3.38072 3.45944 3.61982 3.67866 3.92259 3.99186 4.05000 4.06587 4.16387 4.18348 4.31449 4.33678 4.43775 4.62607 4.67523 4.80199 4.81889 4.85684 5.01035 5.07522 5.11792 5.20428 5.22619 5.37191 5.48195 5.66391 5.68069 5.81686 5.89329 6.00341 6.12914 6.21851 6.44276 6.78248 6.85085 7.05232 7.38462 8.89430 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.002345 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.616945 B =11936.279966 C =12307.685478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 N -0.489 5.489 4 C 0.036 3.964 5 C -0.058 4.058 6 C -0.133 4.133 7 C 0.090 3.910 8 F -0.143 7.143 9 C -0.132 4.132 10 C 0.054 3.946 11 N -0.532 5.532 12 C 0.507 3.493 13 N -0.627 5.627 14 C 0.527 3.473 15 O -0.501 6.501 16 C 0.095 3.905 17 H 0.126 0.874 18 N -0.831 5.831 19 C -0.123 4.123 20 C 0.030 3.970 21 C -0.542 4.542 22 H 0.054 0.946 23 C 0.007 3.993 24 N -0.925 5.925 25 Si 0.955 3.045 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.282 1.282 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.128 0.872 37 H 0.436 0.564 38 H 0.345 0.655 39 H 0.359 0.641 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.010 0.990 43 H 0.004 0.996 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -2.284 25.323 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.029 4.029 3 N -0.185 5.185 4 C -0.073 4.073 5 C -0.078 4.078 6 C -0.153 4.153 7 C 0.069 3.931 8 F -0.121 7.121 9 C -0.153 4.153 10 C -0.065 4.065 11 N -0.260 5.260 12 C 0.153 3.847 13 N -0.282 5.282 14 C 0.313 3.687 15 O -0.369 6.369 16 C -0.021 4.021 17 H 0.143 0.857 18 N -0.364 5.364 19 C -0.163 4.163 20 C -0.007 4.007 21 C -0.580 4.580 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.565 5.565 25 Si 0.781 3.219 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.208 1.208 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.192 0.808 35 H 0.195 0.805 36 H 0.146 0.854 37 H 0.277 0.723 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.022 0.978 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.775 -0.749 25.146 26.331 hybrid contribution 1.362 -1.373 -0.975 2.166 sum -6.413 -2.122 24.171 25.097 Atomic orbital electron populations 1.22200 0.93082 1.04768 1.02596 1.22336 0.96438 0.76933 1.07167 1.45427 1.56465 1.14175 1.02446 1.18955 1.06285 0.91937 0.90098 1.20114 1.00044 1.01180 0.86464 1.21159 1.01525 0.90376 1.02268 1.17310 1.02745 0.87449 0.85595 1.91487 1.90215 1.62112 1.68311 1.20074 1.04904 0.99475 0.90832 1.18877 1.03418 0.94529 0.89653 1.70967 1.26583 1.17175 1.11268 1.19653 0.95902 0.86579 0.82584 1.42652 1.66681 1.19097 0.99769 1.21243 0.75908 0.84436 0.87097 1.90791 1.41539 1.20299 1.84283 1.21365 1.01126 0.92540 0.87072 0.85669 1.58730 1.45260 1.19486 1.12893 1.22188 0.95981 0.98697 0.99416 1.18976 0.95935 0.94850 0.90953 1.21633 1.04821 1.30505 1.01074 0.92809 1.25808 0.98763 0.97887 0.96707 1.70048 1.32434 1.45112 1.08905 0.85545 0.79630 0.78594 0.78159 1.19124 1.20216 1.20845 0.91997 0.93195 0.87616 0.87463 0.85742 0.80801 0.80546 0.85387 0.72331 0.84188 0.82520 0.93766 0.90988 0.97209 0.97807 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 71.98 0.74 -0.51 16 2 C 0.09 0.81 6.66 86.38 0.57 1.38 16 3 N -0.49 -9.50 2.83 -517.60 -1.46 -10.96 16 4 C 0.04 0.76 6.88 38.73 0.27 1.03 16 5 C -0.06 -0.78 10.04 22.30 0.22 -0.55 16 6 C -0.13 -1.89 10.01 22.36 0.22 -1.67 16 7 C 0.09 1.92 7.28 22.34 0.16 2.08 16 8 F -0.14 -3.11 17.26 44.97 0.78 -2.33 16 9 C -0.13 -3.56 10.07 22.54 0.23 -3.33 16 10 C 0.05 1.62 7.22 39.43 0.28 1.91 16 11 N -0.53 -18.86 9.36 -190.04 -1.78 -20.64 16 12 C 0.51 14.15 8.38 260.31 2.18 16.33 16 13 N -0.63 -15.55 5.38 -312.16 -1.68 -17.23 16 14 C 0.53 16.92 7.04 87.66 0.62 17.53 16 15 O -0.50 -20.51 14.87 -2.99 -0.04 -20.56 16 16 C 0.09 2.88 3.21 44.17 0.14 3.03 16 17 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 18 N -0.83 -27.07 8.94 -171.79 -1.54 -28.60 16 19 C -0.12 -4.40 4.78 30.60 0.15 -4.25 16 20 C 0.03 1.37 4.74 29.85 0.14 1.51 16 21 C -0.54 -28.47 9.11 25.60 0.23 -28.24 16 22 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 23 C 0.01 0.38 5.46 84.66 0.46 0.84 16 24 N -0.92 -52.41 13.29 21.45 0.28 -52.13 16 25 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.11 0.68 7.45 -2.39 -0.02 0.67 16 33 H 0.12 0.47 8.14 -2.38 -0.02 0.46 16 34 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.44 7.10 7.86 -92.71 -0.73 6.37 16 38 H 0.34 11.74 8.58 -89.70 -0.77 10.97 16 39 H 0.36 11.62 7.55 -89.69 -0.68 10.95 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 43 H 0.00 0.18 6.87 -2.39 -0.02 0.16 16 44 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -76.52 377.53 2.10 -74.42 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.11 Total: 26.76 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.62 Total: 7.09 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.17 Total: -129.56 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -76.52 2.10 -74.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424171042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.553 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds