Wall clock time and date at job start Tue Mar 31 2020 23:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48489 * 109.47091 * 270.00120 * 3 2 1 5 5 H 1.48503 * 109.46826 * 30.00351 * 3 2 1 6 6 H 1.48501 * 109.46804 * 149.99757 * 3 2 1 7 7 C 1.37875 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00563 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99460 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47087 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46818 * 55.00550 * 10 9 7 12 12 N 1.46496 * 109.47384 * 295.00047 * 10 9 7 13 13 C 1.34774 * 119.99977 * 154.99585 * 12 10 9 14 14 O 1.21589 * 120.00409 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99822 * 180.02562 * 13 12 10 16 16 C 1.46505 * 120.00091 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47320 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.57876 * 59.83565 * 17 16 15 19 19 C 1.53146 * 109.52628 * 180.02562 * 17 16 15 20 20 O 1.43070 * 109.15222 * 175.21542 * 19 17 16 21 21 C 1.43073 * 113.59263 * 302.04630 * 20 19 17 22 22 C 1.53146 * 109.15311 * 57.95215 * 21 20 19 23 23 O 1.43073 * 109.52502 * 299.67297 * 17 16 15 24 24 C 1.50695 * 109.47230 * 174.99725 * 10 9 7 25 25 C 1.38240 * 120.00202 * 79.73092 * 24 10 9 26 26 C 1.38227 * 120.00277 * 179.78681 * 25 24 10 27 27 C 1.38237 * 119.99994 * 0.43984 * 26 25 24 28 28 C 1.38231 * 120.00135 * 359.81391 * 27 26 25 29 29 C 1.38237 * 120.00083 * 359.97438 * 28 27 26 30 30 H 0.96996 * 119.99772 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47251 * 60.00086 * 9 7 2 32 32 H 1.09002 * 109.47320 * 299.99434 * 9 7 2 33 33 H 0.96999 * 120.00253 * 335.00212 * 12 10 9 34 34 H 0.96999 * 120.00408 * 0.02562 * 15 13 12 35 35 H 1.08996 * 109.46982 * 59.99834 * 16 15 13 36 36 H 1.09001 * 109.47023 * 300.00038 * 16 15 13 37 37 H 1.09004 * 109.52009 * 295.11639 * 19 17 16 38 38 H 1.08991 * 109.52223 * 55.31068 * 19 17 16 39 39 H 1.09006 * 109.53017 * 177.85285 * 21 20 19 40 40 H 1.09001 * 109.52692 * 297.98822 * 21 20 19 41 41 H 1.09007 * 109.52339 * 64.58822 * 22 21 20 42 42 H 1.08994 * 109.52608 * 184.71986 * 22 21 20 43 43 H 1.08003 * 119.99373 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.99775 * 180.27379 * 26 25 24 45 45 H 1.07997 * 119.99877 * 179.83064 * 27 26 25 46 46 H 1.07999 * 119.99996 * 179.97438 * 28 27 26 47 47 H 1.07993 * 120.00437 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 -0.0001 11 1 3.5873 -3.1754 -0.8423 12 7 3.6336 -3.2919 1.2514 13 6 3.5067 -4.6328 1.2987 14 8 3.7147 -5.2987 0.3029 15 7 3.1492 -5.2356 2.4499 16 6 3.0118 -6.6933 2.5016 17 6 2.5997 -7.1170 3.9127 18 1 1.6484 -6.6516 4.1707 19 6 2.4564 -8.6408 3.9683 20 8 2.1808 -9.0375 5.3150 21 6 3.1828 -8.6260 6.2496 22 6 3.3262 -7.1023 6.1941 23 8 3.6020 -6.7060 4.8473 24 6 5.5235 -2.6383 -0.1234 25 6 6.3085 -2.3918 0.9874 26 6 7.6862 -2.3978 0.8753 27 6 8.2789 -2.6413 -0.3496 28 6 7.4939 -2.8826 -1.4615 29 6 6.1162 -2.8810 -1.3485 30 1 -0.4849 0.8400 -0.0004 31 1 3.8745 -0.6808 0.8905 32 1 3.8752 -0.6797 -0.8895 33 1 3.4679 -2.7607 2.0459 34 1 2.9829 -4.7044 3.2443 35 1 3.9645 -7.1573 2.2462 36 1 2.2501 -7.0119 1.7900 37 1 1.6366 -8.9533 3.3214 38 1 3.3834 -9.1062 3.6338 39 1 2.8893 -8.9278 7.2551 40 1 4.1341 -9.0919 5.9926 41 1 2.3991 -6.6367 6.5286 42 1 4.1452 -6.7896 6.8419 43 1 5.8454 -2.1976 1.9436 44 1 8.2995 -2.2096 1.7441 45 1 9.3553 -2.6433 -0.4378 46 1 7.9570 -3.0724 -2.4186 47 1 5.5028 -3.0691 -2.2172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438836399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:25 Heat of formation + Delta-G solvation = -95.612121 kcal Electronic energy + Delta-G solvation = -28838.449994 eV Core-core repulsion = 24793.276118 eV Total energy + Delta-G solvation = -4045.173876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 17.44 seconds Orbital eigenvalues (eV) -40.35894 -39.68630 -38.59538 -36.48716 -35.48124 -34.46478 -32.67642 -32.05788 -30.85191 -30.47021 -29.29317 -28.71996 -26.10132 -24.81504 -23.33587 -22.27977 -21.73163 -21.43774 -20.66933 -19.77797 -18.04235 -17.24913 -17.11837 -16.81147 -16.56459 -16.32057 -15.88161 -15.46357 -15.26451 -14.97840 -14.56672 -14.40760 -14.31388 -13.77868 -13.63682 -13.44879 -13.20480 -13.02746 -12.79899 -12.60480 -12.44858 -12.34140 -12.10651 -11.74175 -11.71931 -11.31595 -11.05979 -10.99955 -10.70198 -10.68230 -10.61287 -10.13681 -9.84377 -9.71795 -9.46845 -9.31088 -8.88108 -8.61664 -8.56416 -8.32791 -8.22314 -6.09982 -4.09356 1.72673 1.75864 3.04571 3.26610 3.29509 3.34805 3.37182 3.40952 3.75192 4.14797 4.25910 4.39064 4.53940 4.64097 4.64694 4.76626 4.85337 4.93277 5.14449 5.21682 5.23373 5.23497 5.24438 5.32383 5.36666 5.43121 5.49426 5.63288 5.76647 5.86660 5.88473 6.06893 6.28640 6.35353 6.47464 6.59895 6.66097 6.77500 6.78341 6.80733 6.87100 6.97796 7.08322 7.30167 7.35730 7.51371 7.67029 8.45160 8.54496 8.96579 9.12977 9.51026 11.02840 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.003328 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.410279 B = 8411.134006 C =10341.800995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.213 3.787 11 H 0.092 0.908 12 N -0.716 5.716 13 C 0.707 3.293 14 O -0.599 6.599 15 N -0.746 5.746 16 C 0.154 3.846 17 C 0.042 3.958 18 H 0.078 0.922 19 C 0.034 3.966 20 O -0.378 6.378 21 C 0.022 3.978 22 C 0.024 3.976 23 O -0.370 6.370 24 C -0.075 4.075 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.263 0.737 31 H 0.023 0.977 32 H 0.030 0.970 33 H 0.397 0.603 34 H 0.398 0.602 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -13.175 10.965 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.094 0.906 9 C -0.052 4.052 10 C 0.108 3.892 11 H 0.110 0.890 12 N -0.368 5.368 13 C 0.407 3.593 14 O -0.478 6.478 15 N -0.403 5.403 16 C 0.029 3.971 17 C -0.016 4.016 18 H 0.096 0.904 19 C -0.044 4.044 20 O -0.296 6.296 21 C -0.055 4.055 22 C -0.053 4.053 23 O -0.289 6.289 24 C -0.077 4.077 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.231 0.769 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.650 -13.666 10.027 20.018 hybrid contribution 0.211 1.480 0.853 1.722 sum 10.860 -12.186 10.880 19.617 Atomic orbital electron populations 1.69912 1.06256 1.26893 1.50678 1.24990 0.94683 0.98962 0.94524 0.86856 0.80338 0.83867 0.78696 1.20210 1.21412 1.18968 1.21023 0.88703 0.94665 1.51223 0.90583 1.19880 0.97804 0.89927 0.97570 1.19806 0.87307 0.95858 0.86269 0.89044 1.45004 1.73017 1.04387 1.14387 1.15900 0.77815 0.82479 0.83101 1.90874 1.58442 1.64147 1.34318 1.44849 1.76167 1.06899 1.12348 1.20988 1.02434 0.80930 0.92760 1.23076 0.92752 0.95373 0.90398 0.90426 1.23171 1.03241 0.93602 0.84363 1.88110 1.46690 1.77826 1.16998 1.23275 0.92762 0.95048 0.94397 1.23249 1.02727 0.94720 0.84578 1.88164 1.46278 1.78002 1.16467 1.20635 0.97153 0.96538 0.93369 1.20913 0.93313 0.99819 0.98482 1.21041 0.94850 1.01158 0.97344 1.21003 0.99189 1.01836 0.93225 1.21052 0.93864 1.00893 0.98322 1.21045 0.94612 0.99421 0.97489 0.92685 0.95890 0.95199 0.76933 0.76814 0.91039 0.89967 0.87180 0.91593 0.87807 0.92049 0.91977 0.87682 0.86585 0.86771 0.86839 0.86556 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -13.93 9.39 -34.44 -0.32 -14.25 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16 10 C 0.21 4.29 2.11 -69.08 -0.15 4.14 16 11 H 0.09 2.05 7.44 -51.93 -0.39 1.67 16 12 N -0.72 -13.11 4.05 -59.81 -0.24 -13.36 16 13 C 0.71 13.12 8.52 -86.92 -0.74 12.37 16 14 O -0.60 -13.18 16.01 5.29 0.08 -13.10 16 15 N -0.75 -10.76 5.46 -65.23 -0.36 -11.12 16 16 C 0.15 1.89 5.37 -4.04 -0.02 1.86 16 17 C 0.04 0.42 2.93 -26.66 -0.08 0.34 16 18 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 19 C 0.03 0.30 6.34 37.23 0.24 0.53 16 20 O -0.38 -3.70 10.85 -48.82 -0.53 -4.23 16 21 C 0.02 0.16 7.05 37.23 0.26 0.43 16 22 C 0.02 0.19 7.05 37.23 0.26 0.45 16 23 O -0.37 -3.92 10.25 -48.82 -0.50 -4.42 16 24 C -0.08 -1.37 4.91 -104.62 -0.51 -1.89 16 25 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 26 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 27 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 28 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 29 C -0.11 -1.82 9.67 -39.58 -0.38 -2.20 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 32 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 33 H 0.40 6.62 8.62 -40.82 -0.35 6.27 16 34 H 0.40 5.02 8.37 -40.82 -0.34 4.68 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.12 1.78 7.73 -52.48 -0.41 1.37 16 44 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -34.04 389.33 -10.11 -44.15 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.33 Total: 11.61 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.20 Total: -5.59 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.18 Total: -50.53 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.95 Total: -21.74 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.04 -10.11 -44.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438836399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.458 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.44 seconds