Wall clock time and date at job start Tue Mar 31 2020 23:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48489 * 109.47091 * 270.00120 * 3 2 1 5 5 H 1.48503 * 109.46826 * 30.00351 * 3 2 1 6 6 H 1.48501 * 109.46804 * 149.99757 * 3 2 1 7 7 C 1.37875 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00563 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99460 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47087 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46818 * 55.00550 * 10 9 7 12 12 N 1.46496 * 109.47384 * 295.00047 * 10 9 7 13 13 C 1.34774 * 119.99977 * 154.99585 * 12 10 9 14 14 O 1.21589 * 120.00409 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99822 * 180.02562 * 13 12 10 16 16 C 1.46505 * 120.00091 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47320 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.57876 * 59.83565 * 17 16 15 19 19 C 1.53146 * 109.52628 * 180.02562 * 17 16 15 20 20 O 1.43070 * 109.15222 * 175.21542 * 19 17 16 21 21 C 1.43073 * 113.59263 * 302.04630 * 20 19 17 22 22 C 1.53146 * 109.15311 * 57.95215 * 21 20 19 23 23 O 1.43073 * 109.52502 * 299.67297 * 17 16 15 24 24 C 1.50695 * 109.47230 * 174.99725 * 10 9 7 25 25 C 1.38240 * 120.00202 * 79.73092 * 24 10 9 26 26 C 1.38227 * 120.00277 * 179.78681 * 25 24 10 27 27 C 1.38237 * 119.99994 * 0.43984 * 26 25 24 28 28 C 1.38231 * 120.00135 * 359.81391 * 27 26 25 29 29 C 1.38237 * 120.00083 * 359.97438 * 28 27 26 30 30 H 0.96996 * 119.99772 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47251 * 60.00086 * 9 7 2 32 32 H 1.09002 * 109.47320 * 299.99434 * 9 7 2 33 33 H 0.96999 * 120.00253 * 335.00212 * 12 10 9 34 34 H 0.96999 * 120.00408 * 0.02562 * 15 13 12 35 35 H 1.08996 * 109.46982 * 59.99834 * 16 15 13 36 36 H 1.09001 * 109.47023 * 300.00038 * 16 15 13 37 37 H 1.09004 * 109.52009 * 295.11639 * 19 17 16 38 38 H 1.08991 * 109.52223 * 55.31068 * 19 17 16 39 39 H 1.09006 * 109.53017 * 177.85285 * 21 20 19 40 40 H 1.09001 * 109.52692 * 297.98822 * 21 20 19 41 41 H 1.09007 * 109.52339 * 64.58822 * 22 21 20 42 42 H 1.08994 * 109.52608 * 184.71986 * 22 21 20 43 43 H 1.08003 * 119.99373 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.99775 * 180.27379 * 26 25 24 45 45 H 1.07997 * 119.99877 * 179.83064 * 27 26 25 46 46 H 1.07999 * 119.99996 * 179.97438 * 28 27 26 47 47 H 1.07993 * 120.00437 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6366 -0.0001 11 1 3.5873 -3.1754 -0.8423 12 7 3.6336 -3.2919 1.2514 13 6 3.5067 -4.6328 1.2987 14 8 3.7147 -5.2987 0.3029 15 7 3.1492 -5.2356 2.4499 16 6 3.0118 -6.6933 2.5016 17 6 2.5997 -7.1170 3.9127 18 1 1.6484 -6.6516 4.1707 19 6 2.4564 -8.6408 3.9683 20 8 2.1808 -9.0375 5.3150 21 6 3.1828 -8.6260 6.2496 22 6 3.3262 -7.1023 6.1941 23 8 3.6020 -6.7060 4.8473 24 6 5.5235 -2.6383 -0.1234 25 6 6.3085 -2.3918 0.9874 26 6 7.6862 -2.3978 0.8753 27 6 8.2789 -2.6413 -0.3496 28 6 7.4939 -2.8826 -1.4615 29 6 6.1162 -2.8810 -1.3485 30 1 -0.4849 0.8400 -0.0004 31 1 3.8745 -0.6808 0.8905 32 1 3.8752 -0.6797 -0.8895 33 1 3.4679 -2.7607 2.0459 34 1 2.9829 -4.7044 3.2443 35 1 3.9645 -7.1573 2.2462 36 1 2.2501 -7.0119 1.7900 37 1 1.6366 -8.9533 3.3214 38 1 3.3834 -9.1062 3.6338 39 1 2.8893 -8.9278 7.2551 40 1 4.1341 -9.0919 5.9926 41 1 2.3991 -6.6367 6.5286 42 1 4.1452 -6.7896 6.8419 43 1 5.8454 -2.1976 1.9436 44 1 8.2995 -2.2096 1.7441 45 1 9.3553 -2.6433 -0.4378 46 1 7.9570 -3.0724 -2.4186 47 1 5.5028 -3.0691 -2.2172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438836399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:23 Heat of formation + Delta-G solvation = -119.437944 kcal Electronic energy + Delta-G solvation = -28839.483159 eV Core-core repulsion = 24793.276118 eV Total energy + Delta-G solvation = -4046.207041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.37327 -40.84684 -39.85066 -37.34647 -36.86194 -35.74306 -34.67778 -33.21504 -32.03255 -31.64943 -30.94965 -29.54196 -27.20622 -26.25055 -24.17884 -23.57956 -23.24378 -22.25309 -22.06194 -21.24861 -19.40746 -19.03109 -18.10853 -17.80605 -17.53787 -17.33298 -16.96477 -16.45727 -16.35261 -16.16188 -16.06989 -15.79568 -15.59500 -15.04609 -14.83825 -14.64204 -14.51734 -14.33379 -14.15896 -13.85155 -13.76184 -13.53199 -13.33069 -13.01405 -12.82257 -12.52621 -12.42611 -12.39931 -11.91916 -11.73714 -11.72559 -11.71026 -11.42274 -11.39138 -11.25757 -10.76424 -10.30747 -10.20510 -9.76698 -9.70402 -9.51052 -8.26642 -6.31114 0.51326 0.57563 1.38429 1.39581 1.50589 1.77910 2.24528 2.36945 2.55436 2.74240 2.95733 3.08113 3.35155 3.66963 3.72298 3.91335 3.96042 4.04397 4.05176 4.15756 4.22070 4.30708 4.33776 4.39162 4.44587 4.56851 4.60405 4.61307 4.73486 4.75180 4.78185 4.87975 4.88883 5.04073 5.16451 5.20035 5.28755 5.48358 5.56482 5.61511 5.65866 5.67490 5.86186 5.96014 6.00297 6.09887 6.19641 6.28700 6.75756 7.15856 7.32930 7.66632 8.89690 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.003328 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.410279 B = 8411.134006 C =10341.800995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.517 4.517 8 H 0.031 0.969 9 C -0.004 4.004 10 C 0.223 3.777 11 H 0.055 0.945 12 N -0.713 5.713 13 C 0.702 3.298 14 O -0.638 6.638 15 N -0.732 5.732 16 C 0.153 3.847 17 C 0.053 3.947 18 H 0.079 0.921 19 C 0.035 3.965 20 O -0.394 6.394 21 C 0.019 3.981 22 C 0.020 3.980 23 O -0.389 6.389 24 C -0.099 4.099 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.265 0.735 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.404 0.596 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.660 -12.655 12.553 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.042 4.042 10 C 0.118 3.882 11 H 0.073 0.927 12 N -0.366 5.366 13 C 0.402 3.598 14 O -0.520 6.520 15 N -0.388 5.388 16 C 0.028 3.972 17 C -0.006 4.006 18 H 0.097 0.903 19 C -0.042 4.042 20 O -0.313 6.313 21 C -0.058 4.058 22 C -0.056 4.056 23 O -0.309 6.309 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.150 4.150 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.240 0.760 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.140 0.860 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.161 0.839 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.683 -13.162 11.666 22.284 hybrid contribution -0.724 1.209 0.380 1.460 sum 12.960 -11.952 12.046 21.353 Atomic orbital electron populations 1.70068 1.08269 1.28020 1.52506 1.25891 0.95450 1.03065 0.94173 0.85743 0.79716 0.78660 0.79023 1.19800 1.21135 1.16534 1.21192 0.91029 0.92955 1.50369 0.95043 1.19733 0.94607 0.91885 0.97941 1.19405 0.89222 0.93832 0.85783 0.92709 1.44885 1.73033 1.04556 1.14105 1.16072 0.77761 0.82331 0.83615 1.90837 1.60236 1.64893 1.36000 1.44777 1.74721 1.07965 1.11373 1.21095 1.02100 0.79339 0.94639 1.22915 0.92477 0.96267 0.88893 0.90334 1.23189 1.03986 0.92491 0.84537 1.88092 1.47742 1.78002 1.17434 1.23459 0.92582 0.94738 0.95001 1.23458 1.03689 0.95095 0.83368 1.88123 1.46555 1.78456 1.17767 1.20438 0.95527 0.99268 0.94812 1.21067 0.94431 1.00170 0.98016 1.21427 0.94134 0.99841 0.98864 1.21468 1.01011 0.99705 0.92421 1.21382 0.92761 0.99873 1.00137 1.21190 0.96119 1.00628 0.97016 0.92577 0.94500 0.95152 0.76042 0.75617 0.91734 0.90153 0.86026 0.91239 0.85624 0.91702 0.91775 0.85746 0.86010 0.83690 0.83230 0.83907 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 2 C 0.01 0.64 5.47 84.65 0.46 1.11 16 3 Si 0.94 42.95 27.47 68.60 1.88 44.84 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 7 C -0.52 -28.81 9.39 25.60 0.24 -28.57 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 9 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 10 C 0.22 9.34 2.11 44.25 0.09 9.43 16 11 H 0.05 2.65 7.44 -2.38 -0.02 2.64 16 12 N -0.71 -27.01 4.05 -461.42 -1.87 -28.87 16 13 C 0.70 27.03 8.52 179.06 1.53 28.56 16 14 O -0.64 -29.41 16.01 -4.00 -0.06 -29.47 16 15 N -0.73 -21.52 5.46 -478.54 -2.61 -24.13 16 16 C 0.15 3.80 5.37 86.38 0.46 4.26 16 17 C 0.05 1.03 2.93 30.64 0.09 1.12 16 18 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 19 C 0.04 0.59 6.34 72.03 0.46 1.05 16 20 O -0.39 -7.19 10.85 -135.99 -1.48 -8.67 16 21 C 0.02 0.24 7.05 72.03 0.51 0.75 16 22 C 0.02 0.28 7.05 72.03 0.51 0.79 16 23 O -0.39 -7.83 10.25 -135.99 -1.39 -9.23 16 24 C -0.10 -3.60 4.91 -19.86 -0.10 -3.70 16 25 C -0.12 -3.70 9.32 22.27 0.21 -3.49 16 26 C -0.12 -3.19 10.05 22.27 0.22 -2.96 16 27 C -0.13 -3.06 10.05 22.27 0.22 -2.84 16 28 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 29 C -0.13 -4.44 9.67 22.27 0.22 -4.23 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 32 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 33 H 0.40 13.73 8.62 -92.71 -0.80 12.93 16 34 H 0.41 10.30 8.37 -92.71 -0.78 9.52 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 3.54 7.73 -2.91 -0.02 3.52 16 44 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 47 H 0.11 3.87 8.04 -2.91 -0.02 3.85 16 Total: -1.00 -76.19 389.33 -0.42 -76.61 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.65 Total: 38.90 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.45 Total: -1.93 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.18 Total: -111.06 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -2.93 Total: -47.36 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal Total: -76.19 -0.42 -76.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438836399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.828 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds