Wall clock time and date at job start Tue Mar 31 2020 23:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47251 * 305.00182 * 10 9 7 12 12 N 1.46502 * 109.47148 * 64.99701 * 10 9 7 13 13 C 1.34775 * 119.99859 * 204.99955 * 12 10 9 14 14 O 1.21582 * 120.00501 * 0.02562 * 13 12 10 15 15 N 1.34775 * 119.99712 * 180.02562 * 13 12 10 16 16 C 1.46506 * 120.00222 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47518 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.52862 * 59.86514 * 17 16 15 19 19 C 1.53140 * 109.52556 * 179.97438 * 17 16 15 20 20 O 1.43077 * 109.15237 * 175.21171 * 19 17 16 21 21 C 1.43078 * 113.59522 * 302.05186 * 20 19 17 22 22 C 1.53140 * 109.15223 * 57.94806 * 21 20 19 23 23 O 1.43077 * 109.15237 * 304.69259 * 22 21 20 24 24 C 1.50703 * 109.47298 * 184.99714 * 10 9 7 25 25 C 1.38230 * 120.00102 * 279.72859 * 24 10 9 26 26 C 1.38242 * 119.99861 * 179.74287 * 25 24 10 27 27 C 1.38230 * 119.99895 * 0.52674 * 26 25 24 28 28 C 1.38242 * 120.00098 * 359.74987 * 27 26 25 29 29 C 1.38234 * 119.99895 * 359.97262 * 28 27 26 30 30 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 31 31 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 32 32 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 33 33 H 0.97004 * 119.99964 * 25.00385 * 12 10 9 34 34 H 0.97003 * 120.00471 * 359.97438 * 15 13 12 35 35 H 1.09008 * 109.46631 * 300.00179 * 16 15 13 36 36 H 1.09000 * 109.46888 * 59.99607 * 16 15 13 37 37 H 1.08992 * 109.52637 * 295.11351 * 19 17 16 38 38 H 1.09004 * 109.52656 * 55.31490 * 19 17 16 39 39 H 1.08992 * 109.52898 * 177.85401 * 21 20 19 40 40 H 1.09004 * 109.52243 * 297.98277 * 21 20 19 41 41 H 1.08997 * 109.52457 * 64.59278 * 22 21 20 42 42 H 1.09005 * 109.52543 * 184.72404 * 22 21 20 43 43 H 1.07998 * 119.99864 * 359.97438 * 25 24 10 44 44 H 1.07997 * 120.00038 * 180.29239 * 26 25 24 45 45 H 1.08001 * 120.00204 * 179.76930 * 27 26 25 46 46 H 1.07994 * 119.99803 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.00154 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 1 3.5866 -3.1721 0.8564 12 7 3.6344 -3.2968 -1.2366 13 6 3.5076 -4.6379 -1.2788 14 8 3.7141 -5.2998 -0.2801 15 7 3.1520 -5.2453 -2.4282 16 6 3.0136 -6.7031 -2.4740 17 6 2.6039 -7.1325 -3.8841 18 1 3.3652 -6.8158 -4.5970 19 6 2.4595 -8.6563 -3.9335 20 8 1.9690 -9.0398 -5.2216 21 6 0.7155 -8.4383 -5.5595 22 6 0.8599 -6.9145 -5.5101 23 8 1.3504 -6.5310 -4.2219 24 6 5.5234 -2.6379 0.1369 25 6 6.3094 -2.4069 -0.9765 26 6 7.6870 -2.4029 -0.8614 27 6 8.2787 -2.6406 0.3651 28 6 7.4928 -2.8773 1.4775 29 6 6.1152 -2.8756 1.3634 30 1 -0.4850 0.8401 -0.0041 31 1 3.8752 -0.6844 -0.8859 32 1 3.8746 -0.6762 0.8940 33 1 3.4694 -2.7687 -2.0334 34 1 2.9869 -4.7172 -3.2250 35 1 3.9654 -7.1667 -2.2147 36 1 2.2503 -7.0181 -1.7625 37 1 3.4306 -9.1200 -3.7607 38 1 1.7578 -8.9808 -3.1651 39 1 0.4236 -8.7442 -6.5640 40 1 -0.0451 -8.7564 -4.8464 41 1 1.5615 -6.5900 -6.2785 42 1 -0.1111 -6.4508 -5.6841 43 1 5.8471 -2.2259 -1.9356 44 1 8.3009 -2.2177 -1.7303 45 1 9.3550 -2.6411 0.4543 46 1 7.9551 -3.0626 2.4357 47 1 5.5012 -3.0609 2.2323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438836403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:27 Heat of formation + Delta-G solvation = -95.180295 kcal Electronic energy + Delta-G solvation = -28818.578864 eV Core-core repulsion = 24773.423714 eV Total energy + Delta-G solvation = -4045.155150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.33528 -39.68717 -38.60277 -36.46176 -35.47666 -34.45801 -32.66658 -32.04628 -30.85229 -30.48099 -29.29320 -28.69509 -26.09027 -24.80939 -23.30922 -22.29027 -21.73712 -21.41818 -20.66735 -19.78001 -18.03733 -17.25504 -17.07529 -16.78174 -16.56368 -16.33120 -15.86816 -15.43954 -15.18678 -15.04233 -14.56371 -14.39936 -14.30697 -13.76061 -13.62576 -13.45554 -13.18623 -13.04073 -12.80858 -12.55102 -12.45502 -12.32765 -12.08574 -11.87913 -11.69330 -11.24988 -11.05033 -10.97671 -10.73013 -10.65547 -10.48195 -10.20183 -9.85377 -9.71436 -9.44383 -9.29755 -8.88004 -8.61199 -8.57445 -8.33454 -8.22954 -6.08438 -4.07853 1.71317 1.74190 3.04777 3.26128 3.33335 3.35418 3.38704 3.42533 3.75300 4.13747 4.27899 4.40029 4.55340 4.65591 4.66907 4.78223 4.86181 4.95883 5.17131 5.20566 5.21903 5.25419 5.26184 5.31226 5.39633 5.45029 5.48374 5.61390 5.79510 5.85107 5.87362 6.06527 6.27648 6.34161 6.46572 6.61228 6.68598 6.77050 6.79353 6.80449 6.88277 6.96574 7.07426 7.30995 7.34290 7.51251 7.68043 8.46543 8.54590 8.98656 9.13011 9.52343 11.04417 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.003434 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.779616 B = 8151.016946 C =10530.339450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.213 3.787 11 H 0.092 0.908 12 N -0.716 5.716 13 C 0.707 3.293 14 O -0.599 6.599 15 N -0.746 5.746 16 C 0.153 3.847 17 C 0.043 3.957 18 H 0.075 0.925 19 C 0.033 3.967 20 O -0.379 6.379 21 C 0.022 3.978 22 C 0.024 3.976 23 O -0.367 6.367 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.126 4.126 27 C -0.135 4.135 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.263 0.737 31 H 0.018 0.982 32 H 0.034 0.966 33 H 0.397 0.603 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 -13.097 -10.465 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.107 3.893 11 H 0.110 0.890 12 N -0.368 5.368 13 C 0.407 3.593 14 O -0.478 6.478 15 N -0.403 5.403 16 C 0.028 3.972 17 C -0.016 4.016 18 H 0.093 0.907 19 C -0.044 4.044 20 O -0.297 6.297 21 C -0.055 4.055 22 C -0.053 4.053 23 O -0.286 6.286 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.231 0.769 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.134 -13.585 -9.514 18.933 hybrid contribution 0.083 1.494 -0.866 1.729 sum 9.216 -12.091 -10.380 18.408 Atomic orbital electron populations 1.69912 1.06264 1.26869 1.50637 1.24990 0.94669 0.98931 0.94538 0.86861 0.80491 0.83928 0.78523 1.20331 1.21357 1.18909 1.21031 0.88691 0.94698 1.51216 0.90556 1.19879 0.97825 0.89886 0.97540 1.19819 0.87282 0.95790 0.86362 0.89020 1.45016 1.73053 1.04373 1.14374 1.15901 0.77819 0.82467 0.83115 1.90872 1.58540 1.64409 1.33946 1.44851 1.75999 1.06947 1.12453 1.20993 1.01556 0.80920 0.93718 1.23045 0.87188 0.93670 0.97654 0.90736 1.23167 1.01383 0.93943 0.85923 1.88096 1.37533 1.69119 1.34995 1.23287 0.86486 0.93424 1.02307 1.23256 1.01100 0.94984 0.85924 1.88224 1.36750 1.68946 1.34631 1.20641 0.97164 0.96495 0.93349 1.20909 0.93295 0.99991 0.98448 1.21043 0.94846 1.01194 0.97344 1.21006 0.99194 1.01849 0.93221 1.21059 0.93860 1.00858 0.98325 1.21048 0.94618 0.99349 0.97511 0.92694 0.96371 0.94767 0.76939 0.76830 0.90160 0.90851 0.87335 0.91484 0.87789 0.91908 0.92116 0.87495 0.86591 0.86770 0.86831 0.86543 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.05 9.39 -34.44 -0.32 -14.37 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 10 C 0.21 4.28 2.12 -69.08 -0.15 4.14 16 11 H 0.09 2.07 7.44 -51.93 -0.39 1.68 16 12 N -0.72 -13.11 4.02 -59.82 -0.24 -13.35 16 13 C 0.71 13.12 8.52 -86.92 -0.74 12.38 16 14 O -0.60 -13.18 16.01 5.29 0.08 -13.10 16 15 N -0.75 -10.77 5.46 -65.22 -0.36 -11.13 16 16 C 0.15 1.88 5.37 -4.04 -0.02 1.86 16 17 C 0.04 0.43 2.93 -26.66 -0.08 0.35 16 18 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 19 C 0.03 0.29 6.34 37.23 0.24 0.53 16 20 O -0.38 -3.74 10.85 -48.80 -0.53 -4.27 16 21 C 0.02 0.17 7.05 37.23 0.26 0.43 16 22 C 0.02 0.21 7.05 37.23 0.26 0.47 16 23 O -0.37 -4.24 10.25 -48.80 -0.50 -4.74 16 24 C -0.08 -1.35 4.91 -104.62 -0.51 -1.87 16 25 C -0.11 -1.74 9.33 -39.58 -0.37 -2.11 16 26 C -0.13 -1.79 10.05 -39.58 -0.40 -2.18 16 27 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 28 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 29 C -0.11 -1.80 9.67 -39.58 -0.38 -2.19 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 32 H 0.03 0.79 7.19 -51.93 -0.37 0.42 16 33 H 0.40 6.61 8.62 -40.82 -0.35 6.26 16 34 H 0.40 5.03 8.37 -40.82 -0.34 4.68 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.12 1.72 7.71 -52.49 -0.40 1.32 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.12 1.98 8.04 -52.49 -0.42 1.55 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -34.40 389.30 -10.11 -44.50 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.33 Total: 11.66 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.21 Total: -5.50 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.18 Total: -50.73 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.95 Total: -22.10 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.40 -10.11 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438836403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.676 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds