Wall clock time and date at job start Tue Mar 31 2020 23:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47251 * 305.00182 * 10 9 7 12 12 N 1.46502 * 109.47148 * 64.99701 * 10 9 7 13 13 C 1.34775 * 119.99859 * 204.99955 * 12 10 9 14 14 O 1.21582 * 120.00501 * 0.02562 * 13 12 10 15 15 N 1.34775 * 119.99712 * 180.02562 * 13 12 10 16 16 C 1.46506 * 120.00222 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47518 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.52862 * 59.86514 * 17 16 15 19 19 C 1.53140 * 109.52556 * 179.97438 * 17 16 15 20 20 O 1.43077 * 109.15237 * 175.21171 * 19 17 16 21 21 C 1.43078 * 113.59522 * 302.05186 * 20 19 17 22 22 C 1.53140 * 109.15223 * 57.94806 * 21 20 19 23 23 O 1.43077 * 109.15237 * 304.69259 * 22 21 20 24 24 C 1.50703 * 109.47298 * 184.99714 * 10 9 7 25 25 C 1.38230 * 120.00102 * 279.72859 * 24 10 9 26 26 C 1.38242 * 119.99861 * 179.74287 * 25 24 10 27 27 C 1.38230 * 119.99895 * 0.52674 * 26 25 24 28 28 C 1.38242 * 120.00098 * 359.74987 * 27 26 25 29 29 C 1.38234 * 119.99895 * 359.97262 * 28 27 26 30 30 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 31 31 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 32 32 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 33 33 H 0.97004 * 119.99964 * 25.00385 * 12 10 9 34 34 H 0.97003 * 120.00471 * 359.97438 * 15 13 12 35 35 H 1.09008 * 109.46631 * 300.00179 * 16 15 13 36 36 H 1.09000 * 109.46888 * 59.99607 * 16 15 13 37 37 H 1.08992 * 109.52637 * 295.11351 * 19 17 16 38 38 H 1.09004 * 109.52656 * 55.31490 * 19 17 16 39 39 H 1.08992 * 109.52898 * 177.85401 * 21 20 19 40 40 H 1.09004 * 109.52243 * 297.98277 * 21 20 19 41 41 H 1.08997 * 109.52457 * 64.59278 * 22 21 20 42 42 H 1.09005 * 109.52543 * 184.72404 * 22 21 20 43 43 H 1.07998 * 119.99864 * 359.97438 * 25 24 10 44 44 H 1.07997 * 120.00038 * 180.29239 * 26 25 24 45 45 H 1.08001 * 120.00204 * 179.76930 * 27 26 25 46 46 H 1.07994 * 119.99803 * 180.02562 * 28 27 26 47 47 H 1.07994 * 120.00154 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 6 4.0215 -2.6366 0.0126 11 1 3.5866 -3.1721 0.8564 12 7 3.6344 -3.2968 -1.2366 13 6 3.5076 -4.6379 -1.2788 14 8 3.7141 -5.2998 -0.2801 15 7 3.1520 -5.2453 -2.4282 16 6 3.0136 -6.7031 -2.4740 17 6 2.6039 -7.1325 -3.8841 18 1 3.3652 -6.8158 -4.5970 19 6 2.4595 -8.6563 -3.9335 20 8 1.9690 -9.0398 -5.2216 21 6 0.7155 -8.4383 -5.5595 22 6 0.8599 -6.9145 -5.5101 23 8 1.3504 -6.5310 -4.2219 24 6 5.5234 -2.6379 0.1369 25 6 6.3094 -2.4069 -0.9765 26 6 7.6870 -2.4029 -0.8614 27 6 8.2787 -2.6406 0.3651 28 6 7.4928 -2.8773 1.4775 29 6 6.1152 -2.8756 1.3634 30 1 -0.4850 0.8401 -0.0041 31 1 3.8752 -0.6844 -0.8859 32 1 3.8746 -0.6762 0.8940 33 1 3.4694 -2.7687 -2.0334 34 1 2.9869 -4.7172 -3.2250 35 1 3.9654 -7.1667 -2.2147 36 1 2.2503 -7.0181 -1.7625 37 1 3.4306 -9.1200 -3.7607 38 1 1.7578 -8.9808 -3.1651 39 1 0.4236 -8.7442 -6.5640 40 1 -0.0451 -8.7564 -4.8464 41 1 1.5615 -6.5900 -6.2785 42 1 -0.1111 -6.4508 -5.6841 43 1 5.8471 -2.2259 -1.9356 44 1 8.3009 -2.2177 -1.7303 45 1 9.3550 -2.6411 0.4543 46 1 7.9551 -3.0626 2.4357 47 1 5.5012 -3.0609 2.2323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438836403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:25 Heat of formation + Delta-G solvation = -119.487130 kcal Electronic energy + Delta-G solvation = -28819.632888 eV Core-core repulsion = 24773.423714 eV Total energy + Delta-G solvation = -4046.209174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.67 seconds Orbital eigenvalues (eV) -41.37421 -40.84841 -39.84766 -37.34617 -36.86444 -35.74660 -34.68176 -33.21571 -32.03227 -31.64386 -30.95292 -29.55091 -27.20638 -26.25167 -24.18008 -23.57357 -23.24321 -22.25089 -22.06415 -21.24713 -19.40864 -19.03577 -18.11741 -17.75795 -17.53260 -17.43092 -16.89495 -16.43183 -16.32933 -16.24833 -16.08165 -15.77473 -15.58319 -15.07125 -14.83813 -14.58384 -14.53968 -14.30879 -14.14995 -13.90658 -13.77743 -13.56362 -13.33369 -12.99904 -12.82706 -12.46022 -12.42668 -12.33253 -11.94707 -11.78145 -11.73525 -11.70149 -11.42738 -11.41339 -11.24989 -10.76122 -10.30810 -10.20706 -9.76382 -9.70283 -9.50690 -8.26778 -6.31606 0.51778 0.58029 1.36739 1.40430 1.51355 1.76756 2.25743 2.36862 2.56806 2.73362 2.96170 3.07775 3.35274 3.66964 3.72288 3.91949 3.96269 4.03914 4.05544 4.14577 4.22724 4.30318 4.34459 4.38878 4.44303 4.56232 4.60325 4.61001 4.73259 4.75666 4.78352 4.87170 4.88886 5.05245 5.16835 5.20035 5.27729 5.48576 5.56755 5.61752 5.66458 5.67635 5.86481 5.94713 6.02560 6.09891 6.20156 6.28353 6.75534 7.15941 7.32502 7.66659 8.89799 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.003434 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.779616 B = 8151.016946 C =10530.339450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.519 4.519 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.224 3.776 11 H 0.053 0.947 12 N -0.713 5.713 13 C 0.702 3.298 14 O -0.638 6.638 15 N -0.732 5.732 16 C 0.152 3.848 17 C 0.052 3.948 18 H 0.088 0.912 19 C 0.035 3.965 20 O -0.391 6.391 21 C 0.020 3.980 22 C 0.020 3.980 23 O -0.396 6.396 24 C -0.099 4.099 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.265 0.735 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.404 0.596 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.128 0.872 38 H 0.063 0.937 39 H 0.128 0.872 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -12.522 -12.228 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.173 1.173 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.041 4.041 10 C 0.118 3.882 11 H 0.071 0.929 12 N -0.366 5.366 13 C 0.402 3.598 14 O -0.520 6.520 15 N -0.388 5.388 16 C 0.027 3.973 17 C -0.006 4.006 18 H 0.106 0.894 19 C -0.043 4.043 20 O -0.309 6.309 21 C -0.057 4.057 22 C -0.056 4.056 23 O -0.316 6.316 24 C -0.100 4.100 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.150 4.150 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.240 0.760 34 H 0.244 0.756 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.165 0.835 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.341 -13.026 -11.327 21.219 hybrid contribution -0.956 1.209 -0.315 1.573 sum 11.385 -11.817 -11.642 20.119 Atomic orbital electron populations 1.70077 1.08349 1.28041 1.52476 1.25915 0.95447 1.03147 0.94109 0.85715 0.79367 0.78459 0.79441 1.18566 1.21479 1.17254 1.21199 0.91109 0.92900 1.50470 0.95303 1.19725 0.94511 0.91911 0.97953 1.19402 0.89330 0.93702 0.85802 0.92923 1.44891 1.73076 1.04536 1.14079 1.16076 0.77773 0.82330 0.83624 1.90835 1.60341 1.65163 1.35648 1.44777 1.74530 1.08016 1.11478 1.21123 1.01582 0.79430 0.95137 1.22969 0.87120 0.94425 0.96070 0.89394 1.23212 1.02374 0.93003 0.85695 1.88082 1.38295 1.69382 1.35191 1.23430 0.85773 0.92883 1.03579 1.23448 1.01788 0.95586 0.84802 1.88176 1.37399 1.69665 1.36335 1.20423 0.95411 0.99355 0.94844 1.21074 0.94392 1.00173 0.97979 1.21436 0.94121 0.99753 0.98854 1.21474 1.01005 0.99676 0.92428 1.21378 0.92721 0.99913 1.00163 1.21179 0.96138 1.00665 0.97016 0.92570 0.94591 0.95005 0.76029 0.75617 0.89091 0.92869 0.85382 0.91877 0.85414 0.92185 0.91162 0.86490 0.85803 0.83542 0.83217 0.83982 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.01 0.62 5.47 84.66 0.46 1.09 16 3 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 7 C -0.52 -29.24 9.39 25.60 0.24 -29.00 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C 0.00 -0.15 3.56 29.85 0.11 -0.04 16 10 C 0.22 9.37 2.12 44.24 0.09 9.47 16 11 H 0.05 2.58 7.44 -2.39 -0.02 2.56 16 12 N -0.71 -27.03 4.02 -461.42 -1.86 -28.89 16 13 C 0.70 27.06 8.52 179.06 1.53 28.59 16 14 O -0.64 -29.50 16.01 -3.98 -0.06 -29.56 16 15 N -0.73 -21.50 5.46 -478.53 -2.61 -24.11 16 16 C 0.15 3.77 5.37 86.38 0.46 4.23 16 17 C 0.05 1.01 2.93 30.64 0.09 1.10 16 18 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 19 C 0.03 0.57 6.34 72.03 0.46 1.03 16 20 O -0.39 -7.12 10.85 -136.00 -1.48 -8.59 16 21 C 0.02 0.28 7.05 72.03 0.51 0.79 16 22 C 0.02 0.32 7.05 72.03 0.51 0.83 16 23 O -0.40 -9.02 10.25 -136.00 -1.39 -10.42 16 24 C -0.10 -3.56 4.91 -19.87 -0.10 -3.66 16 25 C -0.12 -3.58 9.33 22.27 0.21 -3.37 16 26 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 27 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 28 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 29 C -0.13 -4.44 9.67 22.27 0.22 -4.22 16 30 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.04 1.52 7.58 -2.38 -0.02 1.51 16 32 H 0.03 1.47 7.19 -2.39 -0.02 1.46 16 33 H 0.40 13.71 8.62 -92.71 -0.80 12.91 16 34 H 0.41 10.27 8.37 -92.71 -0.78 9.50 16 35 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 1.56 8.14 -2.38 -0.02 1.55 16 43 H 0.12 3.44 7.71 -2.91 -0.02 3.42 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 47 H 0.11 3.83 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -77.77 389.30 -0.42 -78.18 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.65 Total: 38.88 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.45 Total: -1.84 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -4.17 Total: -111.68 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -2.93 Total: -48.57 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -77.77 -0.42 -78.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438836403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.305 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.67 seconds