Wall clock time and date at job start Tue Mar 31 2020 21:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47149 * 272.90817 * 3 2 1 5 5 H 1.48502 * 109.46858 * 32.90553 * 3 2 1 6 6 H 1.48494 * 109.47186 * 152.90582 * 3 2 1 7 7 C 1.38818 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00267 * 339.41184 * 7 2 1 9 9 N 1.36937 * 119.99512 * 159.41180 * 7 2 1 10 10 C 1.46926 * 120.62571 * 152.73441 * 9 7 2 11 11 C 1.53198 * 108.89429 * 126.46041 * 10 9 7 12 12 C 1.53042 * 109.31086 * 54.55921 * 11 10 9 13 13 C 1.52998 * 109.45658 * 178.61499 * 12 11 10 14 14 N 1.46503 * 109.47006 * 185.00349 * 13 12 11 15 15 C 1.34770 * 120.00132 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00434 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00123 * 180.02562 * 15 14 13 18 18 C 1.52998 * 112.85461 * 50.32544 * 17 15 14 19 19 F 1.39895 * 109.46946 * 69.66906 * 18 17 15 20 20 F 1.39899 * 109.47537 * 189.67122 * 18 17 15 21 21 F 1.39909 * 109.46868 * 309.67211 * 18 17 15 22 22 C 1.53790 * 113.60916 * 279.12927 * 17 15 14 23 23 C 1.54052 * 86.98592 * 270.83850 * 22 17 15 24 24 C 1.53784 * 87.07916 * 334.56974 * 23 22 17 25 25 C 1.53034 * 109.53807 * 298.63769 * 12 11 10 26 26 C 1.46952 * 120.65918 * 332.54798 * 9 7 2 27 27 H 0.96996 * 120.00085 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.59064 * 6.59800 * 10 9 7 29 29 H 1.09000 * 109.58699 * 246.31802 * 10 9 7 30 30 H 1.08993 * 109.49687 * 174.51178 * 11 10 9 31 31 H 1.08993 * 109.49500 * 294.60918 * 11 10 9 32 32 H 1.08997 * 109.45688 * 58.66053 * 12 11 10 33 33 H 1.09002 * 109.47174 * 305.00168 * 13 12 11 34 34 H 1.09001 * 109.46880 * 65.00451 * 13 12 11 35 35 H 0.97003 * 119.99909 * 0.02562 * 14 13 12 36 36 H 1.08997 * 113.61550 * 25.43542 * 22 17 15 37 37 H 1.09003 * 113.60817 * 156.33445 * 22 17 15 38 38 H 1.09003 * 113.61913 * 220.02410 * 23 22 17 39 39 H 1.08995 * 113.68697 * 89.12817 * 23 22 17 40 40 H 1.08996 * 113.61245 * 270.88246 * 24 23 22 41 41 H 1.08997 * 113.61395 * 139.97413 * 24 23 22 42 42 H 1.09004 * 109.49724 * 181.31230 * 25 12 11 43 43 H 1.08996 * 109.49993 * 301.40992 * 25 12 11 44 44 H 1.08999 * 109.46884 * 113.75329 * 26 9 7 45 45 H 1.09007 * 109.71303 * 353.47008 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0819 -1.3983 5 1 1.4797 2.6341 0.7606 6 1 3.5771 1.4232 0.6376 7 6 2.0103 -1.2022 0.0005 8 1 1.5220 -2.1075 0.3298 9 7 3.3140 -1.2402 -0.4165 10 6 4.2342 -2.2646 0.0958 11 6 4.8778 -2.9908 -1.0897 12 6 5.5331 -1.9645 -2.0167 13 6 6.2067 -2.6888 -3.1839 14 7 6.9345 -1.7188 -4.0059 15 6 7.6089 -2.1319 -5.0972 16 8 7.6137 -3.3066 -5.3986 17 6 8.3581 -1.1342 -5.9424 18 6 9.2789 -0.2309 -5.1196 19 9 10.3508 -0.9827 -4.6268 20 9 9.7660 0.8005 -5.9296 21 9 8.5617 0.3154 -4.0497 22 6 7.4619 -0.3660 -6.9282 23 6 7.7332 -1.5015 -7.9334 24 6 9.0433 -1.7580 -7.1698 25 6 4.4671 -1.0085 -2.5568 26 6 3.8189 -0.2599 -1.3879 27 1 -0.4850 0.8400 0.0004 28 1 3.6822 -2.9794 0.7062 29 1 5.0091 -1.7912 0.6987 30 1 5.6338 -3.6855 -0.7238 31 1 4.1130 -3.5405 -1.6383 32 1 6.2806 -1.3984 -1.4609 33 1 6.9035 -3.4323 -2.7967 34 1 5.4483 -3.1831 -3.7911 35 1 6.9311 -0.7793 -3.7647 36 1 6.4209 -0.3005 -6.6119 37 1 7.8737 0.5957 -7.2343 38 1 7.8844 -1.1533 -8.9552 39 1 7.0212 -2.3241 -7.8674 40 1 9.8865 -1.1761 -7.5418 41 1 9.2780 -2.8154 -7.0484 42 1 4.9308 -0.2922 -3.2351 43 1 3.7061 -1.5768 -3.0916 44 1 4.5598 0.3792 -0.9075 45 1 2.9944 0.3502 -1.7570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449936761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:57 Heat of formation + Delta-G solvation = -149.173602 kcal Electronic energy + Delta-G solvation = -30669.874883 eV Core-core repulsion = 26080.521667 eV Total energy + Delta-G solvation = -4589.353216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.57524 -48.10626 -48.00127 -40.96287 -38.60103 -37.57979 -35.23235 -33.02393 -31.15595 -30.42537 -29.37559 -27.14741 -26.29825 -24.54692 -23.57730 -22.90632 -22.07165 -21.13308 -20.07729 -19.35679 -18.83063 -18.78693 -18.53255 -16.88951 -16.63115 -16.22860 -15.48548 -15.40607 -15.10694 -14.89142 -14.77980 -14.48913 -14.36948 -14.23765 -14.17483 -14.03640 -13.96396 -13.61695 -13.36762 -13.19431 -12.95626 -12.80375 -12.67919 -12.35385 -12.21741 -11.81462 -11.49736 -11.41131 -11.14410 -11.07532 -10.86326 -10.65933 -10.52863 -10.32197 -10.14774 -9.89710 -9.70549 -9.46162 -9.23543 -8.63944 -6.99570 -5.96536 -3.32197 1.88092 2.43876 2.68506 3.20997 3.29110 3.39704 3.46566 3.49298 3.56297 3.97714 4.14280 4.19941 4.30191 4.51140 4.78275 4.88477 4.93641 5.03568 5.05977 5.16019 5.21138 5.35024 5.37613 5.43753 5.51703 5.63570 5.70254 5.79351 5.83375 5.85598 6.02275 6.12606 6.18494 6.31891 6.33556 6.45379 6.60705 6.61896 6.67114 6.93283 7.19894 7.83476 7.94921 8.31490 8.92827 9.70680 10.08640 11.19576 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.003160 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.134066 B = 8858.552978 C = 9272.594952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.149 3.851 11 C -0.126 4.126 12 C -0.093 4.093 13 C 0.123 3.877 14 N -0.717 5.717 15 C 0.540 3.460 16 O -0.518 6.518 17 C -0.171 4.171 18 C 0.469 3.531 19 F -0.174 7.174 20 F -0.173 7.173 21 F -0.177 7.177 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.129 4.129 26 C 0.126 3.874 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.406 0.594 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.181 -0.996 -14.956 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.165 4.165 12 C -0.112 4.112 13 C 0.000 4.000 14 N -0.371 5.371 15 C 0.323 3.677 16 O -0.394 6.394 17 C -0.176 4.176 18 C 0.415 3.585 19 F -0.156 7.156 20 F -0.155 7.155 21 F -0.158 7.158 22 C -0.155 4.155 23 C -0.169 4.169 24 C -0.144 4.144 25 C -0.168 4.168 26 C 0.000 4.000 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.013 -1.740 -15.082 25.120 hybrid contribution 0.618 1.759 0.401 1.908 sum 20.631 0.019 -14.681 25.321 Atomic orbital electron populations 1.69837 1.05738 1.26542 1.53063 1.25277 0.95212 0.97565 0.99538 0.86949 0.80040 0.84709 0.76941 1.21698 1.23166 1.19603 1.18937 0.84982 0.94778 1.40111 0.89688 1.44351 1.08688 1.33382 1.46557 1.20904 0.92404 0.91340 0.93033 1.21981 0.99422 0.97066 0.98067 1.21327 0.97395 0.97488 0.94976 1.21640 0.95273 0.91085 0.92011 1.46326 1.51105 1.13169 1.26539 1.19075 0.79675 0.88090 0.80910 1.90727 1.61883 1.16693 1.70094 1.23690 0.99294 0.98166 0.96412 1.20053 0.80282 0.79713 0.78457 1.93221 1.57942 1.75907 1.88489 1.93178 1.88798 1.60729 1.72753 1.93101 1.77450 1.86897 1.58383 1.23114 0.99872 0.98955 0.93557 1.22851 0.97200 0.98234 0.98628 1.22885 0.97978 1.03291 0.90291 1.22091 0.97697 0.98225 0.98817 1.21326 0.97210 0.92055 0.89408 0.92776 0.91719 0.96012 0.92365 0.91501 0.91033 0.91305 0.90957 0.75577 0.89197 0.87426 0.89756 0.88801 0.88261 0.88306 0.93229 0.91342 0.95842 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.72 13.97 55.49 0.78 -26.94 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.17 24.35 -169.99 -4.14 18.04 16 4 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.69 6.63 56.52 0.37 -6.31 16 7 C -0.26 -7.18 10.04 -15.06 -0.15 -7.33 16 8 H 0.09 2.51 8.05 -52.49 -0.42 2.08 16 9 N -0.61 -14.05 2.78 -172.29 -0.48 -14.53 16 10 C 0.15 2.82 6.51 -3.71 -0.02 2.80 16 11 C -0.13 -1.92 5.36 -26.61 -0.14 -2.06 16 12 C -0.09 -1.32 2.19 -90.58 -0.20 -1.52 16 13 C 0.12 1.57 5.06 -4.04 -0.02 1.55 16 14 N -0.72 -8.53 4.98 -60.29 -0.30 -8.83 16 15 C 0.54 6.52 6.61 -10.99 -0.07 6.45 16 16 O -0.52 -7.68 15.83 5.56 0.09 -7.59 16 17 C -0.17 -1.59 0.86 -154.84 -0.13 -1.72 16 18 C 0.47 4.57 2.64 37.16 0.10 4.67 16 19 F -0.17 -1.90 17.18 2.25 0.04 -1.86 16 20 F -0.17 -1.55 15.74 2.25 0.04 -1.51 16 21 F -0.18 -1.84 14.55 2.25 0.03 -1.81 16 22 C -0.12 -0.85 7.12 -25.77 -0.18 -1.04 16 23 C -0.13 -0.92 7.76 -25.77 -0.20 -1.12 16 24 C -0.11 -0.83 6.83 -25.91 -0.18 -1.01 16 25 C -0.13 -2.12 5.25 -26.61 -0.14 -2.26 16 26 C 0.13 2.64 4.20 -3.70 -0.02 2.63 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.41 4.50 5.24 -40.82 -0.21 4.28 16 36 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.11 0.64 7.18 -51.93 -0.37 0.26 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.61 7.83 -51.93 -0.41 0.20 16 41 H 0.10 0.88 7.41 -51.93 -0.39 0.50 16 42 H 0.05 0.70 7.15 -51.93 -0.37 0.33 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 45 H 0.07 1.69 4.51 -51.92 -0.23 1.45 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -31.49 357.44 -6.61 -38.10 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.60 Total: 0.95 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.45 Total: 0.60 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.00 Total: -50.30 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.49 -6.61 -38.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449936761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.077 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds