Wall clock time and date at job start Tue Mar 31 2020 21:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47149 * 272.90817 * 3 2 1 5 5 H 1.48502 * 109.46858 * 32.90553 * 3 2 1 6 6 H 1.48494 * 109.47186 * 152.90582 * 3 2 1 7 7 C 1.38818 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00267 * 339.41184 * 7 2 1 9 9 N 1.36937 * 119.99512 * 159.41180 * 7 2 1 10 10 C 1.46926 * 120.62571 * 152.73441 * 9 7 2 11 11 C 1.53198 * 108.89429 * 126.46041 * 10 9 7 12 12 C 1.53042 * 109.31086 * 54.55921 * 11 10 9 13 13 C 1.52998 * 109.45658 * 178.61499 * 12 11 10 14 14 N 1.46503 * 109.47006 * 185.00349 * 13 12 11 15 15 C 1.34770 * 120.00132 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00434 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00123 * 180.02562 * 15 14 13 18 18 C 1.52998 * 112.85461 * 50.32544 * 17 15 14 19 19 F 1.39895 * 109.46946 * 69.66906 * 18 17 15 20 20 F 1.39899 * 109.47537 * 189.67122 * 18 17 15 21 21 F 1.39909 * 109.46868 * 309.67211 * 18 17 15 22 22 C 1.53790 * 113.60916 * 279.12927 * 17 15 14 23 23 C 1.54052 * 86.98592 * 270.83850 * 22 17 15 24 24 C 1.53784 * 87.07916 * 334.56974 * 23 22 17 25 25 C 1.53034 * 109.53807 * 298.63769 * 12 11 10 26 26 C 1.46952 * 120.65918 * 332.54798 * 9 7 2 27 27 H 0.96996 * 120.00085 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.59064 * 6.59800 * 10 9 7 29 29 H 1.09000 * 109.58699 * 246.31802 * 10 9 7 30 30 H 1.08993 * 109.49687 * 174.51178 * 11 10 9 31 31 H 1.08993 * 109.49500 * 294.60918 * 11 10 9 32 32 H 1.08997 * 109.45688 * 58.66053 * 12 11 10 33 33 H 1.09002 * 109.47174 * 305.00168 * 13 12 11 34 34 H 1.09001 * 109.46880 * 65.00451 * 13 12 11 35 35 H 0.97003 * 119.99909 * 0.02562 * 14 13 12 36 36 H 1.08997 * 113.61550 * 25.43542 * 22 17 15 37 37 H 1.09003 * 113.60817 * 156.33445 * 22 17 15 38 38 H 1.09003 * 113.61913 * 220.02410 * 23 22 17 39 39 H 1.08995 * 113.68697 * 89.12817 * 23 22 17 40 40 H 1.08996 * 113.61245 * 270.88246 * 24 23 22 41 41 H 1.08997 * 113.61395 * 139.97413 * 24 23 22 42 42 H 1.09004 * 109.49724 * 181.31230 * 25 12 11 43 43 H 1.08996 * 109.49993 * 301.40992 * 25 12 11 44 44 H 1.08999 * 109.46884 * 113.75329 * 26 9 7 45 45 H 1.09007 * 109.71303 * 353.47008 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0819 -1.3983 5 1 1.4797 2.6341 0.7606 6 1 3.5771 1.4232 0.6376 7 6 2.0103 -1.2022 0.0005 8 1 1.5220 -2.1075 0.3298 9 7 3.3140 -1.2402 -0.4165 10 6 4.2342 -2.2646 0.0958 11 6 4.8778 -2.9908 -1.0897 12 6 5.5331 -1.9645 -2.0167 13 6 6.2067 -2.6888 -3.1839 14 7 6.9345 -1.7188 -4.0059 15 6 7.6089 -2.1319 -5.0972 16 8 7.6137 -3.3066 -5.3986 17 6 8.3581 -1.1342 -5.9424 18 6 9.2789 -0.2309 -5.1196 19 9 10.3508 -0.9827 -4.6268 20 9 9.7660 0.8005 -5.9296 21 9 8.5617 0.3154 -4.0497 22 6 7.4619 -0.3660 -6.9282 23 6 7.7332 -1.5015 -7.9334 24 6 9.0433 -1.7580 -7.1698 25 6 4.4671 -1.0085 -2.5568 26 6 3.8189 -0.2599 -1.3879 27 1 -0.4850 0.8400 0.0004 28 1 3.6822 -2.9794 0.7062 29 1 5.0091 -1.7912 0.6987 30 1 5.6338 -3.6855 -0.7238 31 1 4.1130 -3.5405 -1.6383 32 1 6.2806 -1.3984 -1.4609 33 1 6.9035 -3.4323 -2.7967 34 1 5.4483 -3.1831 -3.7911 35 1 6.9311 -0.7793 -3.7647 36 1 6.4209 -0.3005 -6.6119 37 1 7.8737 0.5957 -7.2343 38 1 7.8844 -1.1533 -8.9552 39 1 7.0212 -2.3241 -7.8674 40 1 9.8865 -1.1761 -7.5418 41 1 9.2780 -2.8154 -7.0484 42 1 4.9308 -0.2922 -3.2351 43 1 3.7061 -1.5768 -3.0916 44 1 4.5598 0.3792 -0.9075 45 1 2.9944 0.3502 -1.7570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449936761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:45 Heat of formation + Delta-G solvation = -168.872871 kcal Electronic energy + Delta-G solvation = -30670.729107 eV Core-core repulsion = 26080.521667 eV Total energy + Delta-G solvation = -4590.207441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -51.32189 -48.84790 -48.76114 -41.79352 -39.85391 -38.56143 -36.53842 -34.63461 -32.93127 -31.90951 -30.20942 -28.47885 -26.90403 -25.88741 -24.68983 -24.38208 -23.13897 -22.37947 -21.16554 -20.46983 -19.61338 -19.54493 -19.30995 -18.78018 -17.48302 -17.22681 -17.11512 -16.38969 -16.11670 -15.91159 -15.67079 -15.53257 -15.36231 -15.23661 -15.19998 -15.10163 -14.95012 -14.85477 -14.77308 -14.31812 -14.06171 -13.93952 -13.77654 -13.48317 -13.41830 -13.29023 -13.01520 -12.54375 -12.24732 -12.11634 -12.08966 -11.78697 -11.73857 -11.66973 -11.61817 -11.41016 -11.23049 -11.05751 -10.67158 -10.24843 -8.92542 -8.16401 -5.47735 1.04020 1.29176 1.41565 1.50637 1.64293 1.82279 2.41860 2.50155 2.66886 2.84636 3.06261 3.30153 3.36666 3.43068 3.52169 3.64790 3.73327 3.81959 3.95662 4.22330 4.36897 4.38869 4.50962 4.55196 4.62107 4.63585 4.68097 4.76772 4.78581 4.83743 4.88627 4.99357 4.99502 5.06670 5.12718 5.19033 5.22676 5.26460 5.28404 5.56408 5.87714 6.13190 6.26934 6.91651 6.93359 7.63955 8.04035 9.03784 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.003160 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.134066 B = 8858.552978 C = 9272.594952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.037 4.037 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.313 1.313 6 H -0.260 1.260 7 C -0.249 4.249 8 H 0.050 0.950 9 N -0.621 5.621 10 C 0.142 3.858 11 C -0.117 4.117 12 C -0.083 4.083 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.538 3.462 16 O -0.550 6.550 17 C -0.174 4.174 18 C 0.471 3.529 19 F -0.183 7.183 20 F -0.166 7.166 21 F -0.181 7.181 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.105 4.105 25 C -0.120 4.120 26 C 0.119 3.881 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.411 0.589 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.035 0.965 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.114 0.061 -16.392 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.231 4.231 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.242 1.242 6 H -0.185 1.185 7 C -0.379 4.379 8 H 0.068 0.932 9 N -0.346 5.346 10 C 0.018 3.982 11 C -0.156 4.156 12 C -0.102 4.102 13 C 0.009 3.991 14 N -0.369 5.369 15 C 0.323 3.677 16 O -0.427 6.427 17 C -0.179 4.179 18 C 0.417 3.583 19 F -0.164 7.164 20 F -0.147 7.147 21 F -0.162 7.162 22 C -0.148 4.148 23 C -0.165 4.165 24 C -0.143 4.143 25 C -0.159 4.159 26 C -0.006 4.006 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.251 0.749 36 H 0.106 0.894 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.002 -0.685 -16.530 28.334 hybrid contribution -0.283 1.323 0.867 1.607 sum 22.719 0.637 -15.663 27.602 Atomic orbital electron populations 1.69975 1.07513 1.27209 1.55877 1.25921 0.95819 1.01051 1.00349 0.85881 0.78707 0.80054 0.77613 1.19894 1.24194 1.18476 1.18891 0.86954 0.93499 1.38558 0.93241 1.44502 1.07778 1.34779 1.47582 1.21105 0.91958 0.90491 0.94680 1.21864 0.99765 0.97352 0.96656 1.21213 0.96827 0.96831 0.95309 1.21429 0.95177 0.91104 0.91396 1.46299 1.50876 1.13266 1.26472 1.19478 0.79295 0.88179 0.80770 1.90715 1.62999 1.18194 1.70830 1.23722 0.99778 0.98044 0.96372 1.20081 0.80078 0.79802 0.78358 1.93207 1.58404 1.76177 1.88638 1.93192 1.88703 1.60365 1.72480 1.93088 1.77499 1.86955 1.58676 1.23204 0.99453 0.99639 0.92541 1.22817 0.96176 0.97602 0.99905 1.22965 0.99009 1.02636 0.89652 1.21965 0.97897 0.98736 0.97319 1.21402 0.96698 0.92045 0.90449 0.93000 0.92771 0.94540 0.89151 0.92707 0.89737 0.90657 0.91766 0.74924 0.89364 0.85480 0.87391 0.90517 0.86207 0.89824 0.90372 0.92785 0.94737 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.52 13.97 21.65 0.30 -60.22 16 2 C -0.04 -2.16 5.23 84.86 0.44 -1.71 16 3 Si 0.95 46.14 24.35 68.60 1.67 47.81 16 4 H -0.27 -12.37 6.62 99.48 0.66 -11.71 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 6 H -0.26 -12.05 6.63 99.48 0.66 -11.39 16 7 C -0.25 -14.12 10.04 84.03 0.84 -13.28 16 8 H 0.05 3.08 8.05 -2.91 -0.02 3.05 16 9 N -0.62 -28.51 2.78 -699.00 -1.94 -30.45 16 10 C 0.14 5.20 6.51 86.36 0.56 5.76 16 11 C -0.12 -3.31 5.36 30.67 0.16 -3.14 16 12 C -0.08 -2.12 2.19 -10.77 -0.02 -2.14 16 13 C 0.13 3.04 5.06 86.38 0.44 3.48 16 14 N -0.71 -15.18 4.98 -463.06 -2.31 -17.49 16 15 C 0.54 12.02 6.61 87.66 0.58 12.59 16 16 O -0.55 -15.68 15.83 -3.03 -0.05 -15.73 16 17 C -0.17 -2.83 0.86 -52.40 -0.04 -2.88 16 18 C 0.47 7.95 2.64 71.98 0.19 8.14 16 19 F -0.18 -3.61 17.18 44.97 0.77 -2.83 16 20 F -0.17 -2.46 15.74 44.97 0.71 -1.75 16 21 F -0.18 -3.25 14.55 44.97 0.65 -2.59 16 22 C -0.11 -1.29 7.12 31.22 0.22 -1.07 16 23 C -0.13 -1.47 7.76 31.21 0.24 -1.22 16 24 C -0.11 -1.40 6.83 31.12 0.21 -1.19 16 25 C -0.12 -3.67 5.25 30.67 0.16 -3.51 16 26 C 0.12 4.78 4.20 86.36 0.36 5.14 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 7.82 5.24 -92.71 -0.49 7.34 16 36 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.13 1.01 7.18 -2.39 -0.02 0.99 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.09 7.83 -2.39 -0.02 1.07 16 41 H 0.08 1.40 7.41 -2.39 -0.02 1.38 16 42 H 0.08 1.95 7.15 -2.38 -0.02 1.93 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.03 1.33 7.07 -2.39 -0.02 1.31 16 45 H 0.05 2.13 4.51 -2.38 -0.01 2.11 16 Total: -1.00 -69.85 357.44 4.60 -65.25 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.43 Total: 13.02 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.35 Total: 4.98 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.94 Total: -108.15 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.05 Total: -15.73 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 2.13 Total: -7.18 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -69.85 4.60 -65.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449936761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.622 kcal (2) G-P(sol) polarization free energy of solvation -69.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.99 seconds