Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47132 * 333.16244 * 3 2 1 5 5 C 1.46898 * 111.00132 * 195.55650 * 4 3 2 6 6 N 1.46495 * 109.47323 * 66.04556 * 5 4 3 7 7 N 1.40173 * 126.14634 * 270.18176 * 6 5 4 8 8 C 1.32245 * 107.75561 * 180.26413 * 7 6 5 9 9 C 1.40114 * 125.92378 * 179.74691 * 8 7 6 10 10 H 1.07998 * 119.99832 * 180.02562 * 9 8 7 11 11 C 1.40040 * 120.00285 * 359.97438 * 9 8 7 12 12 N 1.30804 * 119.99485 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00256 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47191 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46998 * 120.00002 * 13 11 9 16 16 H 1.48500 * 109.46960 * 240.00019 * 13 11 9 17 17 N 1.38498 * 108.14799 * 359.74815 * 8 7 6 18 18 C 1.46501 * 125.83447 * 179.97438 * 17 8 7 19 19 C 1.34729 * 108.33198 * 359.97438 * 17 8 7 20 20 S 1.71196 * 125.97556 * 180.02562 * 19 17 8 21 21 C 1.46901 * 110.99920 * 71.60376 * 4 3 2 22 22 C 1.52997 * 109.47052 * 193.24319 * 21 4 3 23 23 C 1.53008 * 109.47130 * 179.97438 * 22 21 4 24 24 C 1.52998 * 109.47129 * 59.99916 * 23 22 21 25 25 C 1.52996 * 109.47015 * 300.00404 * 24 23 22 26 26 C 1.52998 * 109.47270 * 73.24196 * 21 4 3 27 27 H 4.40883 * 5.52073 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47287 * 213.16404 * 3 2 1 29 29 H 1.09005 * 109.47040 * 93.16431 * 3 2 1 30 30 H 1.09000 * 109.47011 * 306.04820 * 5 4 3 31 31 H 1.08994 * 109.47462 * 186.05014 * 5 4 3 32 32 H 0.97001 * 119.99645 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.47192 * 270.01242 * 18 17 8 34 34 H 1.08997 * 109.47288 * 30.01560 * 18 17 8 35 35 H 1.09005 * 109.47078 * 150.01410 * 18 17 8 36 36 H 1.09007 * 109.47083 * 313.24299 * 21 4 3 37 37 H 1.08993 * 109.47272 * 299.99773 * 22 21 4 38 38 H 1.08999 * 109.47507 * 60.00059 * 22 21 4 39 39 H 1.09001 * 109.46737 * 299.99885 * 23 22 21 40 40 H 1.08997 * 109.46997 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47280 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.46984 * 60.00051 * 24 23 22 43 43 H 1.08999 * 109.47012 * 299.99358 * 25 24 23 44 44 H 1.09004 * 109.47298 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47214 * 299.99899 * 26 21 4 46 46 H 1.09007 * 109.46984 * 60.00042 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2349 0.6253 5 6 4.5572 -1.1182 0.9787 6 7 4.7181 -0.1089 2.0283 7 7 4.9360 1.2617 1.8309 8 6 5.0327 1.8301 3.0211 9 6 5.2564 3.1914 3.2662 10 1 5.3193 3.5540 4.2815 11 6 5.3996 4.0816 2.1946 12 7 5.3239 3.6422 0.9649 13 14 5.6971 5.8965 2.5214 14 1 5.7401 6.1351 3.9865 15 1 6.9907 6.3029 1.9161 16 1 4.5975 6.6942 1.9215 17 7 4.8745 0.8464 3.9831 18 6 4.9129 1.0509 5.4333 19 6 4.6793 -0.3307 3.3574 20 16 4.4328 -1.8448 4.1174 21 6 2.9041 -2.3941 -0.2467 22 6 3.1150 -3.6826 0.5509 23 6 2.8727 -4.8900 -0.3572 24 6 3.8534 -4.8504 -1.5308 25 6 3.6425 -3.5619 -2.3284 26 6 3.8853 -2.3543 -1.4200 27 1 -1.0498 -0.0002 0.0003 28 1 3.0090 0.8611 0.5622 29 1 3.0093 0.0576 -1.0261 30 1 5.1273 -0.8210 0.0985 31 1 4.9220 -2.0796 1.3402 32 1 5.4234 4.2587 0.2227 33 1 5.9366 0.9354 5.7895 34 1 4.5574 2.0541 5.6683 35 1 4.2734 0.3152 5.9210 36 1 1.8826 -2.3647 -0.6261 37 1 4.1364 -3.7120 0.9302 38 1 2.4160 -3.7110 1.3868 39 1 1.8511 -4.8603 -0.7361 40 1 3.0234 -5.8079 0.2110 41 1 3.6811 -5.7108 -2.1775 42 1 4.8750 -4.8801 -1.1518 43 1 2.6210 -3.5323 -2.7074 44 1 4.3409 -3.5339 -3.1648 45 1 3.7350 -1.4364 -1.9883 46 1 4.9068 -2.3837 -1.0407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490738563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = 129.187945 kcal Electronic energy + Delta-G solvation = -27500.265478 eV Core-core repulsion = 23939.885286 eV Total energy + Delta-G solvation = -3560.380191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -40.91042 -39.43066 -36.19061 -34.31569 -33.86592 -32.57133 -30.78129 -30.69526 -29.26732 -28.05716 -26.60001 -25.80007 -24.10828 -22.54508 -21.86304 -21.01800 -20.90049 -19.34168 -18.04338 -17.49012 -16.73718 -16.25468 -15.72402 -15.37450 -15.14792 -14.87889 -14.54052 -14.35148 -14.02071 -13.91512 -13.79547 -13.34513 -13.10305 -12.64553 -12.30702 -12.25621 -12.14371 -11.97941 -11.92279 -11.82338 -11.57854 -11.15867 -11.08991 -10.95318 -10.60420 -10.59076 -10.50095 -10.31338 -10.15899 -10.11582 -9.96123 -9.78795 -9.54949 -9.19875 -8.90442 -8.07785 -7.09434 -6.72650 -6.62241 -5.17921 2.32127 2.61741 2.73884 2.88938 2.93733 3.02599 3.18158 3.40749 3.49621 3.62173 4.06957 4.34362 4.65283 4.74380 4.80243 4.81335 5.00300 5.12414 5.20843 5.28964 5.42447 5.53028 5.55786 5.56828 5.61767 5.63992 5.76375 5.83816 5.86605 6.01928 6.05119 6.08793 6.12280 6.14707 6.19451 6.23090 6.29049 6.38332 6.51041 6.53334 6.61496 6.77291 6.99734 7.16075 7.17911 7.59844 7.77654 7.94485 8.21146 8.32218 9.12406 9.88048 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.004075 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.070270 B = 6869.585158 C = 7893.126132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.156 4.156 3 C 0.149 3.851 4 N -0.535 5.535 5 C 0.326 3.674 6 N -0.381 5.381 7 N -0.349 5.349 8 C 0.377 3.623 9 C -0.436 4.436 10 H 0.098 0.902 11 C 0.077 3.923 12 N -0.738 5.738 13 Si 0.928 3.072 14 H -0.258 1.258 15 H -0.270 1.270 16 H -0.270 1.270 17 N -0.518 5.518 18 C 0.101 3.899 19 C 0.481 3.519 20 S -0.702 6.702 21 C 0.097 3.903 22 C -0.109 4.109 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.158 4.158 27 H 0.213 0.787 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.285 0.715 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -4.628 -5.984 8.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.156 4.156 3 C 0.023 3.977 4 N -0.259 5.259 5 C 0.115 3.885 6 N -0.168 5.168 7 N -0.181 5.181 8 C 0.128 3.872 9 C -0.477 4.477 10 H 0.116 0.884 11 C -0.149 4.149 12 N -0.363 5.363 13 Si 0.751 3.249 14 H -0.181 1.181 15 H -0.195 1.195 16 H -0.195 1.195 17 N -0.219 5.219 18 C -0.043 4.043 19 C 0.113 3.887 20 S -0.578 6.578 21 C -0.012 4.012 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.149 4.149 26 C -0.197 4.197 27 H 0.230 0.770 28 H 0.138 0.862 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.975 -5.423 -6.418 8.913 hybrid contribution 0.439 1.754 -0.251 1.825 sum -2.536 -3.669 -6.669 8.023 Atomic orbital electron populations 1.24695 0.95689 1.01230 1.02505 1.22984 0.94194 0.99523 0.98917 1.19252 0.84906 0.94578 0.98983 1.61928 1.17671 1.02825 1.43483 1.21780 0.88581 0.90487 0.87677 1.49154 1.55757 1.08880 1.02976 1.79266 1.40717 0.82707 1.15404 1.21246 0.93276 0.91069 0.81577 1.18411 1.46627 0.87086 0.95623 0.88428 1.25828 0.93056 1.01883 0.94142 1.69871 1.29814 1.37265 0.99307 0.85919 0.78916 0.79944 0.80128 1.18148 1.19497 1.19491 1.45970 1.61141 1.06143 1.08634 1.21747 1.03089 1.03255 0.76161 1.22901 0.88534 0.91187 0.86069 1.92695 1.79298 1.11342 1.74463 1.21693 0.99166 0.89907 0.90442 1.21559 1.03218 0.91995 0.97914 1.21521 0.99129 0.98318 0.96474 1.21562 0.99948 0.97152 0.97143 1.21434 1.01494 0.94372 0.97628 1.22324 1.00667 0.98712 0.98019 0.76962 0.86165 0.92357 0.91449 0.86691 0.90424 0.91538 0.89849 0.89182 0.89837 0.91377 0.90549 0.92257 0.91827 0.92330 0.91925 0.92119 0.92205 0.91801 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.46 19.25 29.55 0.57 -2.89 16 2 C -0.16 -2.77 12.58 -37.12 -0.47 -3.23 16 3 C 0.15 2.73 5.30 -6.61 -0.04 2.69 16 4 N -0.53 -9.48 4.50 -234.03 -1.05 -10.54 16 5 C 0.33 6.18 4.75 -63.32 -0.30 5.88 16 6 N -0.38 -8.67 3.36 -65.06 -0.22 -8.88 16 7 N -0.35 -8.57 9.37 31.21 0.29 -8.28 16 8 C 0.38 9.12 7.50 -155.27 -1.16 7.95 16 9 C -0.44 -9.97 8.98 -38.20 -0.34 -10.31 16 10 H 0.10 2.02 7.11 -52.49 -0.37 1.65 16 11 C 0.08 1.70 5.50 -17.31 -0.10 1.61 16 12 N -0.74 -17.25 11.90 55.55 0.66 -16.59 16 13 Si 0.93 16.33 29.56 -169.99 -5.03 11.31 16 14 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 15 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 16 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 17 N -0.52 -11.70 3.17 -124.66 -0.39 -12.09 16 18 C 0.10 1.80 10.65 59.85 0.64 2.44 16 19 C 0.48 11.43 7.84 -86.93 -0.68 10.75 16 20 S -0.70 -17.19 29.50 -107.50 -3.17 -20.36 16 21 C 0.10 1.38 2.07 -67.71 -0.14 1.24 16 22 C -0.11 -1.53 5.21 -26.73 -0.14 -1.67 16 23 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 24 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 25 C -0.11 -1.15 5.92 -26.71 -0.16 -1.31 16 26 C -0.16 -1.96 4.43 -26.71 -0.12 -2.08 16 27 H 0.21 2.42 7.80 -54.10 -0.42 2.00 16 28 H 0.12 2.66 6.15 -51.93 -0.32 2.34 16 29 H 0.06 0.97 6.45 -51.93 -0.33 0.64 16 30 H 0.07 1.21 6.83 -51.93 -0.35 0.86 16 31 H 0.12 2.18 5.75 -51.93 -0.30 1.88 16 32 H 0.28 6.02 8.30 -40.82 -0.34 5.68 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.32 7.32 -51.93 -0.38 0.94 16 35 H 0.09 1.61 7.61 -51.93 -0.40 1.22 16 36 H 0.08 1.22 7.19 -51.93 -0.37 0.85 16 37 H 0.07 1.03 6.49 -51.93 -0.34 0.69 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.81 6.64 -51.93 -0.35 0.47 16 46 H 0.07 0.86 6.54 -51.93 -0.34 0.52 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -29.13 379.81 -12.73 -41.85 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.79 Total: 9.60 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -2.75 Total: 8.25 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.71 Total: -56.38 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.31 kcal Atomic # 16 Polarization: -17.19 SS G_CDS: -3.17 Total: -20.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.13 -12.73 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490738563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.042 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds