Wall clock time and date at job start Tue Mar 31 2020 20:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47132 * 333.16244 * 3 2 1 5 5 C 1.46898 * 111.00132 * 195.55650 * 4 3 2 6 6 N 1.46495 * 109.47323 * 66.04556 * 5 4 3 7 7 N 1.40173 * 126.14634 * 270.18176 * 6 5 4 8 8 C 1.32245 * 107.75561 * 180.26413 * 7 6 5 9 9 C 1.40114 * 125.92378 * 179.74691 * 8 7 6 10 10 H 1.07998 * 119.99832 * 180.02562 * 9 8 7 11 11 C 1.40040 * 120.00285 * 359.97438 * 9 8 7 12 12 N 1.30804 * 119.99485 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00256 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47191 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46998 * 120.00002 * 13 11 9 16 16 H 1.48500 * 109.46960 * 240.00019 * 13 11 9 17 17 N 1.38498 * 108.14799 * 359.74815 * 8 7 6 18 18 C 1.46501 * 125.83447 * 179.97438 * 17 8 7 19 19 C 1.34729 * 108.33198 * 359.97438 * 17 8 7 20 20 S 1.71196 * 125.97556 * 180.02562 * 19 17 8 21 21 C 1.46901 * 110.99920 * 71.60376 * 4 3 2 22 22 C 1.52997 * 109.47052 * 193.24319 * 21 4 3 23 23 C 1.53008 * 109.47130 * 179.97438 * 22 21 4 24 24 C 1.52998 * 109.47129 * 59.99916 * 23 22 21 25 25 C 1.52996 * 109.47015 * 300.00404 * 24 23 22 26 26 C 1.52998 * 109.47270 * 73.24196 * 21 4 3 27 27 H 4.40883 * 5.52073 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47287 * 213.16404 * 3 2 1 29 29 H 1.09005 * 109.47040 * 93.16431 * 3 2 1 30 30 H 1.09000 * 109.47011 * 306.04820 * 5 4 3 31 31 H 1.08994 * 109.47462 * 186.05014 * 5 4 3 32 32 H 0.97001 * 119.99645 * 180.02562 * 12 11 9 33 33 H 1.08998 * 109.47192 * 270.01242 * 18 17 8 34 34 H 1.08997 * 109.47288 * 30.01560 * 18 17 8 35 35 H 1.09005 * 109.47078 * 150.01410 * 18 17 8 36 36 H 1.09007 * 109.47083 * 313.24299 * 21 4 3 37 37 H 1.08993 * 109.47272 * 299.99773 * 22 21 4 38 38 H 1.08999 * 109.47507 * 60.00059 * 22 21 4 39 39 H 1.09001 * 109.46737 * 299.99885 * 23 22 21 40 40 H 1.08997 * 109.46997 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47280 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.46984 * 60.00051 * 24 23 22 43 43 H 1.08999 * 109.47012 * 299.99358 * 25 24 23 44 44 H 1.09004 * 109.47298 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.47214 * 299.99899 * 26 21 4 46 46 H 1.09007 * 109.46984 * 60.00042 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2349 0.6253 5 6 4.5572 -1.1182 0.9787 6 7 4.7181 -0.1089 2.0283 7 7 4.9360 1.2617 1.8309 8 6 5.0327 1.8301 3.0211 9 6 5.2564 3.1914 3.2662 10 1 5.3193 3.5540 4.2815 11 6 5.3996 4.0816 2.1946 12 7 5.3239 3.6422 0.9649 13 14 5.6971 5.8965 2.5214 14 1 5.7401 6.1351 3.9865 15 1 6.9907 6.3029 1.9161 16 1 4.5975 6.6942 1.9215 17 7 4.8745 0.8464 3.9831 18 6 4.9129 1.0509 5.4333 19 6 4.6793 -0.3307 3.3574 20 16 4.4328 -1.8448 4.1174 21 6 2.9041 -2.3941 -0.2467 22 6 3.1150 -3.6826 0.5509 23 6 2.8727 -4.8900 -0.3572 24 6 3.8534 -4.8504 -1.5308 25 6 3.6425 -3.5619 -2.3284 26 6 3.8853 -2.3543 -1.4200 27 1 -1.0498 -0.0002 0.0003 28 1 3.0090 0.8611 0.5622 29 1 3.0093 0.0576 -1.0261 30 1 5.1273 -0.8210 0.0985 31 1 4.9220 -2.0796 1.3402 32 1 5.4234 4.2587 0.2227 33 1 5.9366 0.9354 5.7895 34 1 4.5574 2.0541 5.6683 35 1 4.2734 0.3152 5.9210 36 1 1.8826 -2.3647 -0.6261 37 1 4.1364 -3.7120 0.9302 38 1 2.4160 -3.7110 1.3868 39 1 1.8511 -4.8603 -0.7361 40 1 3.0234 -5.8079 0.2110 41 1 3.6811 -5.7108 -2.1775 42 1 4.8750 -4.8801 -1.1518 43 1 2.6210 -3.5323 -2.7074 44 1 4.3409 -3.5339 -3.1648 45 1 3.7350 -1.4364 -1.9883 46 1 4.9068 -2.3837 -1.0407 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490738563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:52 Heat of formation + Delta-G solvation = 115.854365 kcal Electronic energy + Delta-G solvation = -27500.843665 eV Core-core repulsion = 23939.885286 eV Total energy + Delta-G solvation = -3560.958379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 17.70 seconds Orbital eigenvalues (eV) -42.65993 -40.65955 -37.42888 -35.96083 -35.51300 -33.90636 -32.45506 -31.71111 -30.47992 -29.61553 -28.28018 -27.29986 -25.52240 -23.65022 -23.39107 -22.64676 -22.16150 -20.51864 -19.58922 -18.91956 -18.38005 -17.65297 -17.42774 -16.85856 -16.59982 -16.50146 -15.79864 -15.67040 -15.32056 -15.20854 -14.87677 -14.73408 -14.33948 -14.04134 -13.76993 -13.64201 -13.44592 -13.38568 -13.18604 -13.05348 -13.00869 -12.73261 -12.42073 -12.16961 -11.99661 -11.95038 -11.78554 -11.60977 -11.42599 -11.41023 -11.23039 -11.10708 -11.07363 -10.84878 -10.65877 -9.44170 -8.80592 -8.62864 -8.52787 -6.97574 0.52945 0.84111 1.25947 1.44458 1.60914 1.63118 1.72938 1.82894 1.87423 2.12272 2.42189 2.94896 3.09180 3.44644 3.53877 3.70184 3.79672 3.99418 4.03392 4.10865 4.17519 4.22789 4.35989 4.45002 4.45229 4.47097 4.54811 4.59319 4.65463 4.70757 4.74147 4.90520 4.91728 5.05619 5.07558 5.10188 5.13618 5.21777 5.23440 5.27945 5.34039 5.43566 5.51555 5.69847 5.76177 5.95997 6.15758 6.47994 6.56729 6.64685 7.32231 8.23279 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.004075 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.070270 B = 6869.585158 C = 7893.126132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.213 4.213 3 C 0.160 3.840 4 N -0.545 5.545 5 C 0.328 3.672 6 N -0.377 5.377 7 N -0.371 5.371 8 C 0.354 3.646 9 C -0.450 4.450 10 H 0.118 0.882 11 C 0.038 3.962 12 N -0.773 5.773 13 Si 1.004 2.996 14 H -0.245 1.245 15 H -0.268 1.268 16 H -0.269 1.269 17 N -0.519 5.519 18 C 0.095 3.905 19 C 0.467 3.533 20 S -0.732 6.732 21 C 0.101 3.899 22 C -0.103 4.103 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.106 4.106 26 C -0.153 4.153 27 H 0.254 0.746 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.292 0.708 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -3.995 -6.679 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.214 4.214 3 C 0.034 3.966 4 N -0.270 5.270 5 C 0.118 3.882 6 N -0.163 5.163 7 N -0.203 5.203 8 C 0.106 3.894 9 C -0.491 4.491 10 H 0.135 0.865 11 C -0.186 4.186 12 N -0.398 5.398 13 Si 0.823 3.177 14 H -0.168 1.168 15 H -0.192 1.192 16 H -0.194 1.194 17 N -0.220 5.220 18 C -0.046 4.046 19 C 0.096 3.904 20 S -0.609 6.609 21 C -0.007 4.007 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.192 4.192 27 H 0.270 0.730 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.646 -4.816 -7.110 9.329 hybrid contribution 0.581 1.583 -0.065 1.687 sum -3.065 -3.233 -7.175 8.445 Atomic orbital electron populations 1.25650 0.96492 0.98506 0.99778 1.23170 0.94717 1.02062 1.01454 1.18932 0.85863 0.93249 0.98559 1.61922 1.16474 1.03716 1.44880 1.21846 0.89787 0.89499 0.87089 1.49483 1.54601 1.08876 1.03330 1.79217 1.41390 0.83459 1.16282 1.21671 0.93866 0.91917 0.81938 1.18941 1.46348 0.86781 0.97054 0.86464 1.26839 0.92002 1.06238 0.93494 1.69959 1.30146 1.39233 1.00478 0.84794 0.78548 0.73769 0.80564 1.16776 1.19239 1.19423 1.46249 1.60367 1.05307 1.10035 1.22019 1.04223 1.04474 0.73873 1.22894 0.89592 0.91332 0.86570 1.92605 1.80948 1.12504 1.74815 1.21738 0.99706 0.88562 0.90659 1.21483 1.01397 0.93420 0.97783 1.21489 1.00076 0.96847 0.96399 1.21553 0.99275 0.97818 0.96832 1.21426 1.02391 0.93166 0.97441 1.22258 0.99521 0.99886 0.97505 0.72952 0.90312 0.91561 0.90965 0.86999 0.89770 0.89923 0.87620 0.89425 0.89780 0.92977 0.93154 0.91317 0.91131 0.90121 0.92364 0.91319 0.90777 0.92205 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.48 19.25 74.32 1.43 -4.05 16 2 C -0.21 -7.64 12.58 31.13 0.39 -7.24 16 3 C 0.16 6.13 5.30 84.50 0.45 6.58 16 4 N -0.55 -20.14 4.50 -894.35 -4.03 -24.17 16 5 C 0.33 13.06 4.75 170.81 0.81 13.87 16 6 N -0.38 -17.83 3.36 -359.74 -1.21 -19.04 16 7 N -0.37 -18.85 9.37 -55.17 -0.52 -19.37 16 8 C 0.35 17.42 7.50 133.52 1.00 18.42 16 9 C -0.45 -20.42 8.98 23.16 0.21 -20.21 16 10 H 0.12 4.68 7.11 -2.91 -0.02 4.66 16 11 C 0.04 1.63 5.50 85.28 0.47 2.10 16 12 N -0.77 -36.57 11.90 21.84 0.26 -36.31 16 13 Si 1.00 32.35 29.56 68.60 2.03 34.38 16 14 H -0.25 -7.32 7.11 99.48 0.71 -6.62 16 15 H -0.27 -8.48 7.11 99.48 0.71 -7.77 16 16 H -0.27 -8.60 7.11 99.48 0.71 -7.90 16 17 N -0.52 -23.80 3.17 -548.30 -1.74 -25.54 16 18 C 0.10 3.39 10.65 127.77 1.36 4.75 16 19 C 0.47 22.83 7.84 179.06 1.40 24.23 16 20 S -0.73 -36.83 29.50 -56.49 -1.67 -38.49 16 21 C 0.10 2.94 2.07 44.91 0.09 3.03 16 22 C -0.10 -2.94 5.21 30.60 0.16 -2.78 16 23 C -0.11 -2.31 5.92 30.60 0.18 -2.13 16 24 C -0.12 -2.12 5.92 30.59 0.18 -1.94 16 25 C -0.11 -1.99 5.92 30.61 0.18 -1.81 16 26 C -0.15 -3.75 4.43 30.61 0.14 -3.62 16 27 H 0.25 4.85 7.80 -4.43 -0.03 4.82 16 28 H 0.08 3.69 6.15 -2.39 -0.01 3.67 16 29 H 0.07 2.32 6.45 -2.38 -0.02 2.30 16 30 H 0.07 2.75 6.83 -2.39 -0.02 2.73 16 31 H 0.11 4.48 5.75 -2.39 -0.01 4.47 16 32 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.11 3.22 7.32 -2.39 -0.02 3.20 16 35 H 0.09 3.14 7.61 -2.38 -0.02 3.13 16 36 H 0.08 2.45 7.19 -2.38 -0.02 2.43 16 37 H 0.05 1.64 6.49 -2.39 -0.02 1.63 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.06 1.52 6.64 -2.39 -0.02 1.50 16 46 H 0.06 1.57 6.54 -2.38 -0.02 1.55 16 Total: -1.00 -64.85 379.81 2.57 -62.28 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.98 Total: 37.08 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 8.45 Total: 29.18 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -7.23 Total: -124.43 kcal Atomic # 14 Polarization: 32.35 SS G_CDS: 2.03 Total: 34.38 kcal Atomic # 16 Polarization: -36.83 SS G_CDS: -1.67 Total: -38.49 kcal Total: -64.85 2.57 -62.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490738563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.137 kcal (2) G-P(sol) polarization free energy of solvation -64.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.70 seconds