Wall clock time and date at job start Wed Apr 1 2020 00:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47369 * 274.66615 * 3 2 1 5 5 H 1.48503 * 109.47551 * 34.66770 * 3 2 1 6 6 H 1.48499 * 109.47143 * 154.66642 * 3 2 1 7 7 C 1.39937 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00243 * 162.23209 * 7 2 1 9 9 C 1.41396 * 120.00258 * 342.22927 * 7 2 1 10 10 C 1.40722 * 120.24324 * 155.28814 * 9 7 2 11 11 C 1.37614 * 119.74231 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25203 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75125 * 179.97438 * 12 11 10 14 14 N 1.46509 * 109.46889 * 90.00335 * 13 12 11 15 15 C 1.34780 * 119.99586 * 179.97438 * 14 13 12 16 16 O 1.21580 * 120.00314 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99002 * 180.02562 * 15 14 13 18 18 C 1.46511 * 119.99444 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.46954 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47022 * 60.00170 * 19 18 17 21 21 O 1.42896 * 109.47434 * 299.99993 * 19 18 17 22 22 C 1.52996 * 109.47109 * 179.97438 * 19 18 17 23 23 H 1.09005 * 110.45672 * 59.29884 * 22 19 18 24 24 C 1.54510 * 110.51555 * 181.90638 * 22 19 18 25 25 C 1.54477 * 104.06446 * 118.78482 * 24 22 19 26 26 O 1.44426 * 104.80370 * 23.98045 * 25 24 22 27 27 C 1.44426 * 105.27615 * 319.48976 * 26 25 24 28 28 C 1.38636 * 120.49627 * 0.25749 * 12 11 10 29 29 C 1.37617 * 120.24971 * 359.43810 * 28 12 11 30 30 H 0.97003 * 120.00369 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.12517 * 0.04899 * 10 9 7 32 32 H 1.08001 * 119.87274 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47394 * 330.00898 * 13 12 11 34 34 H 1.09002 * 109.47157 * 210.00273 * 13 12 11 35 35 H 0.97002 * 119.99857 * 0.02562 * 14 13 12 36 36 H 0.96991 * 120.00893 * 359.97438 * 17 15 14 37 37 H 1.09002 * 109.47117 * 59.99802 * 18 17 15 38 38 H 1.08993 * 109.46829 * 300.00207 * 18 17 15 39 39 H 0.96696 * 114.00435 * 300.00099 * 21 19 18 40 40 H 1.09004 * 110.51308 * 237.43163 * 24 22 19 41 41 H 1.09003 * 110.50596 * 0.14036 * 24 22 19 42 42 H 1.08992 * 110.37205 * 142.81448 * 25 24 22 43 43 H 1.09007 * 110.37106 * 265.15182 * 25 24 22 44 44 H 1.09003 * 110.37002 * 281.68454 * 27 26 25 45 45 H 1.08992 * 110.37579 * 159.34327 * 27 26 25 46 46 H 1.08001 * 119.87056 * 179.70411 * 28 12 11 47 47 H 1.08003 * 120.12486 * 180.27556 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3910 2.1034 -1.3954 5 1 1.4924 2.6222 0.7964 6 1 3.5855 1.4138 0.5991 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3516 -2.4074 0.3726 10 6 1.8218 -3.6493 -0.0931 11 6 1.1749 -4.8063 0.2761 12 6 0.0635 -4.7517 1.1032 13 6 -0.6366 -6.0257 1.5000 14 7 -0.0446 -6.5437 2.7360 15 6 -0.5147 -7.6825 3.2826 16 8 -1.4302 -8.2796 2.7503 17 7 0.0297 -8.1586 4.4199 18 6 -0.4809 -9.3968 5.0139 19 6 0.3047 -9.7128 6.2882 20 1 0.1890 -8.8943 6.9987 21 8 1.6879 -9.8733 5.9676 22 6 -0.2288 -11.0054 6.9088 23 1 -0.1326 -11.8334 6.2064 24 6 0.5166 -11.3223 8.2246 25 6 -0.5934 -11.3040 9.2988 26 8 -1.8121 -11.5803 8.5748 27 6 -1.7012 -10.8332 7.3437 28 6 -0.4119 -3.5334 1.5632 29 6 0.2230 -2.3641 1.2118 30 1 -0.4851 0.8400 0.0004 31 1 2.6874 -3.6940 -0.7375 32 1 1.5342 -5.7606 -0.0797 33 1 -0.5246 -6.7643 0.7062 34 1 -1.6955 -5.8233 1.6613 35 1 0.6851 -6.0667 3.1613 36 1 0.7598 -7.6821 4.8448 37 1 -0.3648 -10.2153 4.3035 38 1 -1.5361 -9.2745 5.2580 39 1 1.8658 -10.5860 5.3387 40 1 0.9816 -12.3068 8.1726 41 1 1.2636 -10.5566 8.4341 42 1 -0.4118 -12.0771 10.0452 43 1 -0.6472 -10.3235 9.7721 44 1 -1.9248 -9.7806 7.5172 45 1 -2.3705 -11.2448 6.5884 46 1 -1.2814 -3.5023 2.2031 47 1 -0.1465 -1.4164 1.5750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519596052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:45 Heat of formation + Delta-G solvation = -120.728311 kcal Electronic energy + Delta-G solvation = -27431.247718 eV Core-core repulsion = 23384.984722 eV Total energy + Delta-G solvation = -4046.262996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.39517 -39.59845 -37.86924 -37.50928 -34.80378 -34.22783 -33.41594 -32.84622 -30.63642 -30.04980 -29.36364 -27.85818 -26.47692 -24.14263 -23.50691 -22.53044 -21.32078 -21.08198 -20.53339 -20.09702 -18.29376 -17.39769 -17.33075 -17.13359 -16.32074 -16.11243 -15.62089 -15.46391 -15.31669 -14.92362 -14.51431 -14.14026 -14.03027 -13.87599 -13.76249 -13.47092 -13.27501 -12.93727 -12.55873 -12.49084 -12.29339 -12.04544 -11.90315 -11.74178 -11.60196 -11.33809 -11.20200 -11.10944 -11.09862 -10.62886 -10.56283 -10.50044 -10.24074 -10.01604 -9.70117 -9.49627 -9.23530 -9.17998 -8.49184 -7.57760 -7.46153 -6.87577 -4.47130 2.48225 2.87890 2.97815 3.01305 3.05508 3.17373 3.43138 3.51256 3.78202 3.84645 4.04033 4.16175 4.40264 4.43578 4.55085 4.63620 4.68310 4.77603 4.84361 4.93759 5.25169 5.29649 5.32524 5.40770 5.48522 5.52879 5.59199 5.69026 5.80336 5.94798 6.24510 6.29871 6.31496 6.35827 6.45032 6.86008 6.88762 6.97116 7.11278 7.14913 7.19332 7.26197 7.50658 7.73816 7.94777 8.01270 8.18609 8.28299 8.53056 8.78007 8.82935 8.85971 10.06586 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.001722 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.164844 B =16257.361686 C =16540.396796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.245 4.245 13 C 0.203 3.797 14 N -0.733 5.733 15 C 0.698 3.302 16 O -0.603 6.603 17 N -0.748 5.748 18 C 0.107 3.893 19 C 0.105 3.895 20 H 0.107 0.893 21 O -0.553 6.553 22 C -0.152 4.152 23 H 0.091 0.909 24 C -0.145 4.145 25 C 0.041 3.959 26 O -0.375 6.375 27 C 0.049 3.951 28 C -0.080 4.080 29 C -0.170 4.170 30 H 0.282 0.718 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.396 0.604 36 H 0.399 0.601 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.379 0.621 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -16.863 15.064 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.247 4.247 13 C 0.081 3.919 14 N -0.387 5.387 15 C 0.398 3.602 16 O -0.482 6.482 17 N -0.405 5.405 18 C -0.018 4.018 19 C 0.046 3.954 20 H 0.125 0.875 21 O -0.359 6.359 22 C -0.172 4.172 23 H 0.109 0.891 24 C -0.183 4.183 25 C -0.035 4.035 26 O -0.294 6.294 27 C -0.028 4.028 28 C -0.099 4.099 29 C -0.189 4.189 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.226 0.774 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.042 -16.883 15.006 22.588 hybrid contribution 1.046 0.921 -0.195 1.408 sum 1.088 -15.962 14.811 21.802 Atomic orbital electron populations 1.69824 1.07656 1.29462 1.34224 1.25952 0.94744 1.01488 0.92133 0.86297 0.80765 0.80537 0.79165 1.19475 1.19955 1.18355 1.19651 0.98188 0.91276 1.39641 0.90284 1.17675 0.90879 0.92065 0.88010 1.20968 1.03995 0.92856 1.07106 1.20412 0.94897 0.96489 0.96988 1.18994 1.02567 0.92625 1.10469 1.19799 0.95641 0.92934 0.83567 1.45726 1.39729 1.24743 1.28524 1.16103 0.82243 0.81476 0.80392 1.90887 1.32117 1.61000 1.64189 1.44974 1.40706 1.27653 1.27176 1.21847 0.98597 0.87085 0.94305 1.22207 0.81545 0.96568 0.95125 0.87479 1.86600 1.23573 1.58671 1.67029 1.23225 0.96319 0.98874 0.98752 0.89095 1.22931 0.98609 1.03322 0.93409 1.23477 0.83651 1.01346 0.95076 1.89152 1.39176 1.69498 1.31544 1.23490 0.95306 0.96939 0.87090 1.20563 0.98006 0.92596 0.98747 1.21306 0.99468 0.96776 1.01384 0.90682 0.88906 0.89381 0.92653 0.92565 0.77000 0.76630 0.91432 0.90835 0.77359 0.90491 0.89521 0.89034 0.92120 0.91682 0.88472 0.89393 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.97 55.55 0.61 -19.10 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 8 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 9 C 0.12 2.98 5.57 -106.82 -0.60 2.38 16 10 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 11 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 12 C -0.24 -5.04 5.27 -104.33 -0.55 -5.59 16 13 C 0.20 3.70 5.79 -5.19 -0.03 3.67 16 14 N -0.73 -11.53 5.55 -66.41 -0.37 -11.90 16 15 C 0.70 10.96 8.57 -86.91 -0.74 10.21 16 16 O -0.60 -11.74 16.34 5.30 0.09 -11.65 16 17 N -0.75 -8.39 5.45 -65.22 -0.36 -8.74 16 18 C 0.11 0.96 5.15 -4.04 -0.02 0.93 16 19 C 0.11 0.67 2.31 -26.74 -0.06 0.61 16 20 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 21 O -0.55 -3.80 12.67 -35.23 -0.45 -4.24 16 22 C -0.15 -0.87 2.87 -89.05 -0.26 -1.13 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 24 C -0.14 -0.80 6.53 -25.16 -0.16 -0.96 16 25 C 0.04 0.26 7.63 37.93 0.29 0.55 16 26 O -0.38 -3.36 11.65 -35.23 -0.41 -3.77 16 27 C 0.05 0.34 6.20 37.94 0.24 0.57 16 28 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 29 C -0.17 -4.22 8.70 -38.88 -0.34 -4.56 16 30 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 31 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.40 5.65 8.48 -40.82 -0.35 5.31 16 36 H 0.40 3.81 8.36 -40.82 -0.34 3.47 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.70 7.35 -51.93 -0.38 0.32 16 39 H 0.38 1.65 9.05 45.56 0.41 2.06 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.48 7.58 -51.93 -0.39 0.09 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.06 0.43 7.81 -51.93 -0.41 0.02 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 47 H 0.12 3.03 6.18 -52.48 -0.32 2.71 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -30.49 389.76 -10.25 -40.75 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.40 Total: 13.27 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.81 Total: -13.41 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.12 Total: -39.75 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.77 Total: -19.67 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.49 -10.25 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519596052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.982 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds