Wall clock time and date at job start Wed Apr 1 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99716 * 2 1 4 4 H 1.48499 * 109.47369 * 274.66615 * 3 2 1 5 5 H 1.48503 * 109.47551 * 34.66770 * 3 2 1 6 6 H 1.48499 * 109.47143 * 154.66642 * 3 2 1 7 7 C 1.39937 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00243 * 162.23209 * 7 2 1 9 9 C 1.41396 * 120.00258 * 342.22927 * 7 2 1 10 10 C 1.40722 * 120.24324 * 155.28814 * 9 7 2 11 11 C 1.37614 * 119.74231 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25203 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75125 * 179.97438 * 12 11 10 14 14 N 1.46509 * 109.46889 * 90.00335 * 13 12 11 15 15 C 1.34780 * 119.99586 * 179.97438 * 14 13 12 16 16 O 1.21580 * 120.00314 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99002 * 180.02562 * 15 14 13 18 18 C 1.46511 * 119.99444 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.46954 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47022 * 60.00170 * 19 18 17 21 21 O 1.42896 * 109.47434 * 299.99993 * 19 18 17 22 22 C 1.52996 * 109.47109 * 179.97438 * 19 18 17 23 23 H 1.09005 * 110.45672 * 59.29884 * 22 19 18 24 24 C 1.54510 * 110.51555 * 181.90638 * 22 19 18 25 25 C 1.54477 * 104.06446 * 118.78482 * 24 22 19 26 26 O 1.44426 * 104.80370 * 23.98045 * 25 24 22 27 27 C 1.44426 * 105.27615 * 319.48976 * 26 25 24 28 28 C 1.38636 * 120.49627 * 0.25749 * 12 11 10 29 29 C 1.37617 * 120.24971 * 359.43810 * 28 12 11 30 30 H 0.97003 * 120.00369 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.12517 * 0.04899 * 10 9 7 32 32 H 1.08001 * 119.87274 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.47394 * 330.00898 * 13 12 11 34 34 H 1.09002 * 109.47157 * 210.00273 * 13 12 11 35 35 H 0.97002 * 119.99857 * 0.02562 * 14 13 12 36 36 H 0.96991 * 120.00893 * 359.97438 * 17 15 14 37 37 H 1.09002 * 109.47117 * 59.99802 * 18 17 15 38 38 H 1.08993 * 109.46829 * 300.00207 * 18 17 15 39 39 H 0.96696 * 114.00435 * 300.00099 * 21 19 18 40 40 H 1.09004 * 110.51308 * 237.43163 * 24 22 19 41 41 H 1.09003 * 110.50596 * 0.14036 * 24 22 19 42 42 H 1.08992 * 110.37205 * 142.81448 * 25 24 22 43 43 H 1.09007 * 110.37106 * 265.15182 * 25 24 22 44 44 H 1.09003 * 110.37002 * 281.68454 * 27 26 25 45 45 H 1.08992 * 110.37579 * 159.34327 * 27 26 25 46 46 H 1.08001 * 119.87056 * 179.70411 * 28 12 11 47 47 H 1.08003 * 120.12486 * 180.27556 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3910 2.1034 -1.3954 5 1 1.4924 2.6222 0.7964 6 1 3.5855 1.4138 0.5991 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3516 -2.4074 0.3726 10 6 1.8218 -3.6493 -0.0931 11 6 1.1749 -4.8063 0.2761 12 6 0.0635 -4.7517 1.1032 13 6 -0.6366 -6.0257 1.5000 14 7 -0.0446 -6.5437 2.7360 15 6 -0.5147 -7.6825 3.2826 16 8 -1.4302 -8.2796 2.7503 17 7 0.0297 -8.1586 4.4199 18 6 -0.4809 -9.3968 5.0139 19 6 0.3047 -9.7128 6.2882 20 1 0.1890 -8.8943 6.9987 21 8 1.6879 -9.8733 5.9676 22 6 -0.2288 -11.0054 6.9088 23 1 -0.1326 -11.8334 6.2064 24 6 0.5166 -11.3223 8.2246 25 6 -0.5934 -11.3040 9.2988 26 8 -1.8121 -11.5803 8.5748 27 6 -1.7012 -10.8332 7.3437 28 6 -0.4119 -3.5334 1.5632 29 6 0.2230 -2.3641 1.2118 30 1 -0.4851 0.8400 0.0004 31 1 2.6874 -3.6940 -0.7375 32 1 1.5342 -5.7606 -0.0797 33 1 -0.5246 -6.7643 0.7062 34 1 -1.6955 -5.8233 1.6613 35 1 0.6851 -6.0667 3.1613 36 1 0.7598 -7.6821 4.8448 37 1 -0.3648 -10.2153 4.3035 38 1 -1.5361 -9.2745 5.2580 39 1 1.8658 -10.5860 5.3387 40 1 0.9816 -12.3068 8.1726 41 1 1.2636 -10.5566 8.4341 42 1 -0.4118 -12.0771 10.0452 43 1 -0.6472 -10.3235 9.7721 44 1 -1.9248 -9.7806 7.5172 45 1 -2.3705 -11.2448 6.5884 46 1 -1.2814 -3.5023 2.2031 47 1 -0.1465 -1.4164 1.5750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519596052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:43 Heat of formation + Delta-G solvation = -143.062918 kcal Electronic energy + Delta-G solvation = -27432.216219 eV Core-core repulsion = 23384.984722 eV Total energy + Delta-G solvation = -4047.231497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.20548 -40.56652 -39.48080 -38.27851 -36.32802 -35.26659 -35.03297 -33.42895 -32.08615 -31.18381 -30.82673 -28.95215 -27.77970 -25.39027 -24.45209 -23.17109 -22.89230 -22.12328 -21.80469 -21.44706 -19.45342 -19.23453 -18.02236 -17.70173 -17.24677 -16.96891 -16.95787 -16.43153 -16.33890 -15.97828 -15.73827 -15.58186 -15.37456 -15.10654 -14.90550 -14.48765 -14.23177 -14.04503 -13.83838 -13.78738 -13.41895 -13.28339 -13.00347 -12.91546 -12.79440 -12.72577 -12.39135 -12.21766 -12.16108 -11.81007 -11.60998 -11.51361 -11.42693 -11.29004 -11.03460 -10.96272 -10.78305 -10.35365 -9.70626 -9.39363 -9.28713 -8.66967 -6.36812 0.82587 1.13960 1.38759 1.44619 1.53677 1.87512 2.18685 2.19949 2.70177 2.98867 3.26351 3.41466 3.51239 3.73457 3.78123 3.88679 4.03444 4.14682 4.18428 4.21699 4.33425 4.35659 4.42572 4.53040 4.66320 4.68483 4.73446 4.81729 4.83400 4.85664 4.98038 5.04907 5.10360 5.14938 5.19919 5.35494 5.43155 5.47672 5.56917 5.68897 5.82052 5.89008 6.07844 6.08798 6.21102 6.36322 6.68036 6.73577 6.91825 7.00471 7.13750 7.61191 8.29824 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.001722 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.164844 B =16257.361686 C =16540.396796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.243 4.243 11 C -0.067 4.067 12 C -0.226 4.226 13 C 0.213 3.787 14 N -0.729 5.729 15 C 0.697 3.303 16 O -0.641 6.641 17 N -0.731 5.731 18 C 0.105 3.895 19 C 0.122 3.878 20 H 0.110 0.890 21 O -0.562 6.562 22 C -0.144 4.144 23 H 0.098 0.902 24 C -0.139 4.139 25 C 0.035 3.965 26 O -0.402 6.402 27 C 0.043 3.957 28 C -0.081 4.081 29 C -0.192 4.192 30 H 0.289 0.711 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.405 0.595 36 H 0.410 0.590 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.390 0.610 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 -17.822 16.041 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.262 4.262 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.090 3.910 14 N -0.383 5.383 15 C 0.397 3.603 16 O -0.523 6.523 17 N -0.387 5.387 18 C -0.020 4.020 19 C 0.062 3.938 20 H 0.128 0.872 21 O -0.369 6.369 22 C -0.164 4.164 23 H 0.117 0.883 24 C -0.177 4.177 25 C -0.041 4.041 26 O -0.321 6.321 27 C -0.033 4.033 28 C -0.100 4.100 29 C -0.212 4.212 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.241 0.759 36 H 0.247 0.753 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.240 0.760 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.975 -17.867 16.019 24.016 hybrid contribution 0.714 1.028 -0.446 1.329 sum 1.689 -16.839 15.573 22.998 Atomic orbital electron populations 1.69874 1.09049 1.30701 1.35071 1.26774 0.95467 1.04600 0.91164 0.85206 0.79258 0.75988 0.79371 1.18806 1.19087 1.18131 1.19894 0.98444 0.92513 1.41686 0.90451 1.18017 0.91703 0.93140 0.88863 1.21158 1.04576 0.93024 1.07458 1.20684 0.94557 0.96941 0.96384 1.19197 1.01681 0.93094 1.08821 1.19544 0.95120 0.91656 0.84681 1.45402 1.39954 1.25061 1.27929 1.16190 0.81899 0.81075 0.81150 1.90867 1.33891 1.62014 1.65543 1.44864 1.40240 1.28027 1.25592 1.22030 0.98822 0.85849 0.95291 1.22024 0.81128 0.96958 0.93663 0.87199 1.86586 1.23405 1.59410 1.67496 1.23150 0.95487 0.98699 0.99038 0.88328 1.22892 0.98260 1.03772 0.92768 1.23644 0.83067 1.02021 0.95403 1.89124 1.40537 1.70014 1.32414 1.23582 0.96162 0.96904 0.86698 1.20752 0.98196 0.92393 0.98679 1.21258 1.00316 0.97046 1.02532 0.90026 0.88333 0.86626 0.92502 0.93042 0.75948 0.75333 0.91551 0.91296 0.76010 0.89839 0.89280 0.88095 0.91642 0.91507 0.88442 0.87812 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.15 10.97 21.82 0.24 -41.91 16 2 C 0.04 1.75 5.14 85.25 0.44 2.18 16 3 Si 0.98 37.14 29.59 68.60 2.03 39.17 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.06 9.05 23.46 0.21 -25.85 16 8 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.09 4.46 5.57 -21.29 -0.12 4.34 16 10 C -0.24 -11.40 9.80 22.73 0.22 -11.18 16 11 C -0.07 -2.75 9.67 22.22 0.21 -2.54 16 12 C -0.23 -9.01 5.27 -19.68 -0.10 -9.11 16 13 C 0.21 7.39 5.79 85.63 0.50 7.89 16 14 N -0.73 -21.45 5.55 -482.29 -2.68 -24.13 16 15 C 0.70 20.62 8.57 179.05 1.53 22.15 16 16 O -0.64 -24.15 16.34 -3.97 -0.06 -24.22 16 17 N -0.73 -14.82 5.45 -478.53 -2.61 -17.43 16 18 C 0.10 1.67 5.15 86.38 0.44 2.12 16 19 C 0.12 1.28 2.31 30.59 0.07 1.35 16 20 H 0.11 1.15 8.12 -2.39 -0.02 1.13 16 21 O -0.56 -6.19 12.67 -148.98 -1.89 -8.08 16 22 C -0.14 -1.37 2.87 -9.78 -0.03 -1.40 16 23 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 24 C -0.14 -1.24 6.53 31.61 0.21 -1.04 16 25 C 0.03 0.39 7.63 72.48 0.55 0.94 16 26 O -0.40 -6.81 11.65 -148.98 -1.74 -8.55 16 27 C 0.04 0.55 6.20 72.49 0.45 1.00 16 28 C -0.08 -3.58 9.67 22.22 0.21 -3.36 16 29 C -0.19 -9.75 8.70 22.73 0.20 -9.55 16 30 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 31 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 35 H 0.41 10.63 8.48 -92.71 -0.79 9.84 16 36 H 0.41 6.75 8.36 -92.72 -0.78 5.97 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.21 7.35 -2.39 -0.02 1.19 16 39 H 0.39 2.33 9.05 -74.06 -0.67 1.66 16 40 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.09 0.78 7.58 -2.39 -0.02 0.76 16 42 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.07 0.80 7.81 -2.39 -0.02 0.78 16 45 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 47 H 0.10 5.36 6.18 -2.91 -0.02 5.34 16 Total: -1.00 -66.20 389.76 -2.92 -69.12 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -1.22 Total: 38.08 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.00 Total: -22.06 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -5.05 Total: -83.47 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -3.69 Total: -40.84 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -66.20 -2.92 -69.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519596052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.945 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds