Wall clock time and date at job start Wed Apr 1 2020 00:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47043 * 274.66047 * 3 2 1 5 5 H 1.48497 * 109.47451 * 34.66303 * 3 2 1 6 6 H 1.48496 * 109.47002 * 154.66554 * 3 2 1 7 7 C 1.39938 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99822 * 162.23688 * 7 2 1 9 9 C 1.41398 * 120.00353 * 342.22725 * 7 2 1 10 10 C 1.40714 * 120.24144 * 155.29155 * 9 7 2 11 11 C 1.37615 * 119.74360 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24815 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74810 * 179.97438 * 12 11 10 14 14 N 1.46492 * 109.47548 * 89.99800 * 13 12 11 15 15 C 1.34771 * 120.00242 * 179.72417 * 14 13 12 16 16 O 1.21583 * 120.00122 * 0.27394 * 15 14 13 17 17 N 1.34783 * 120.00086 * 180.27640 * 15 14 13 18 18 C 1.46502 * 119.99841 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46880 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.46904 * 304.99613 * 19 18 17 21 21 O 1.42900 * 109.47034 * 65.00064 * 19 18 17 22 22 C 1.53003 * 109.46784 * 184.99675 * 19 18 17 23 23 H 1.09000 * 110.45657 * 57.39391 * 22 19 18 24 24 C 1.54501 * 110.50829 * 179.97438 * 22 19 18 25 25 C 1.54484 * 104.06557 * 118.64455 * 24 22 19 26 26 O 1.44433 * 104.79721 * 23.97770 * 25 24 22 27 27 C 1.44418 * 105.27572 * 319.49066 * 26 25 24 28 28 C 1.38631 * 120.50200 * 0.24828 * 12 11 10 29 29 C 1.37625 * 120.24446 * 359.45202 * 28 12 11 30 30 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.12736 * 0.04420 * 10 9 7 32 32 H 1.08007 * 119.87825 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46951 * 329.98883 * 13 12 11 34 34 H 1.09002 * 109.46502 * 209.99769 * 13 12 11 35 35 H 0.97007 * 119.99798 * 359.97438 * 14 13 12 36 36 H 0.96997 * 120.00090 * 359.97438 * 17 15 14 37 37 H 1.09000 * 109.46810 * 299.99412 * 18 17 15 38 38 H 1.08994 * 109.47036 * 59.99388 * 18 17 15 39 39 H 0.96699 * 114.00032 * 59.99526 * 21 19 18 40 40 H 1.09003 * 110.51476 * 237.28853 * 24 22 19 41 41 H 1.09008 * 110.51302 * 0.02562 * 24 22 19 42 42 H 1.08996 * 110.37319 * 142.80266 * 25 24 22 43 43 H 1.08997 * 110.37526 * 265.15118 * 25 24 22 44 44 H 1.09008 * 110.36978 * 281.67831 * 27 26 25 45 45 H 1.08999 * 110.37176 * 159.34819 * 27 26 25 46 46 H 1.08003 * 119.87909 * 179.70669 * 28 12 11 47 47 H 1.08004 * 120.12349 * 180.27340 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4924 2.6223 0.7963 6 1 3.5856 1.4138 0.5991 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2859 9 6 1.3515 -2.4074 0.3727 10 6 1.8218 -3.6492 -0.0930 11 6 1.1749 -4.8063 0.2762 12 6 0.0635 -4.7517 1.1033 13 6 -0.6367 -6.0258 1.5001 14 7 -0.0448 -6.5438 2.7359 15 6 -0.5181 -7.6799 3.2852 16 8 -1.4331 -8.2775 2.7524 17 7 0.0228 -8.1535 4.4253 18 6 -0.4914 -9.3887 5.0221 19 6 0.2908 -9.7022 6.2991 20 1 1.3563 -9.7398 6.0725 21 8 0.0459 -8.6827 7.2701 22 6 -0.1605 -11.0545 6.8546 23 1 -0.0235 -11.8376 6.1089 24 6 0.6158 -11.3955 8.1461 25 6 -0.4816 -11.4946 9.2288 26 8 -1.6909 -11.8018 8.5013 27 6 -1.6352 -10.9878 7.3096 28 6 -0.4119 -3.5334 1.5634 29 6 0.2230 -2.3640 1.2119 30 1 -0.4851 0.8400 -0.0004 31 1 2.6873 -3.6941 -0.7374 32 1 1.5337 -5.7606 -0.0803 33 1 -0.5249 -6.7642 0.7062 34 1 -1.6955 -5.8233 1.6614 35 1 0.6855 -6.0673 3.1608 36 1 0.7530 -7.6770 4.8502 37 1 -1.5469 -9.2635 5.2636 38 1 -0.3755 -10.2097 4.3146 39 1 -0.8839 -8.5926 7.5198 40 1 1.1344 -12.3484 8.0397 41 1 1.3209 -10.6005 8.3891 42 1 -0.2491 -12.2935 9.9328 43 1 -0.5850 -10.5442 9.7524 44 1 -1.9155 -9.9597 7.5390 45 1 -2.2889 -11.3973 6.5395 46 1 -1.2813 -3.5022 2.2034 47 1 -0.1464 -1.4164 1.5751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519596058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:40 Heat of formation + Delta-G solvation = -118.003058 kcal Electronic energy + Delta-G solvation = -27505.506573 eV Core-core repulsion = 23459.361753 eV Total energy + Delta-G solvation = -4046.144820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.89 seconds Orbital eigenvalues (eV) -40.55733 -39.61707 -37.81705 -37.41726 -34.80629 -34.23609 -33.41327 -32.79885 -30.58660 -29.99426 -29.36377 -28.01891 -26.55380 -24.44171 -23.53615 -22.39515 -21.11078 -21.07136 -20.47302 -20.09751 -18.28583 -17.54980 -17.39747 -17.06217 -16.50110 -16.03910 -15.51420 -15.44735 -15.35366 -14.95099 -14.52977 -14.26353 -14.09497 -13.89044 -13.77497 -13.44459 -13.26522 -12.83177 -12.55729 -12.41552 -12.31510 -12.04557 -11.89801 -11.76574 -11.60244 -11.32535 -11.20062 -11.16446 -11.10192 -10.62997 -10.56230 -10.51799 -10.21686 -10.01413 -9.70130 -9.49619 -9.23539 -9.18052 -8.49273 -7.57755 -7.46186 -6.87519 -4.47125 2.48345 2.88175 2.97782 3.01357 3.05584 3.17762 3.42932 3.48918 3.83189 3.84740 3.96070 4.22012 4.31860 4.43330 4.49666 4.62393 4.66896 4.77278 4.82493 4.97121 5.24279 5.28104 5.31573 5.41454 5.48482 5.54686 5.59170 5.64205 5.80245 5.94763 6.24407 6.29583 6.30040 6.35842 6.44966 6.85932 6.88698 6.97147 7.09497 7.13637 7.19175 7.26198 7.50636 7.73747 7.94763 8.01259 8.18596 8.28067 8.53078 8.78016 8.82843 8.85962 10.06648 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.001722 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.082987 B =16258.378655 C =16707.327348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.069 4.069 12 C -0.245 4.245 13 C 0.203 3.797 14 N -0.733 5.733 15 C 0.698 3.302 16 O -0.602 6.602 17 N -0.748 5.748 18 C 0.108 3.892 19 C 0.104 3.896 20 H 0.112 0.888 21 O -0.553 6.553 22 C -0.153 4.153 23 H 0.098 0.902 24 C -0.146 4.146 25 C 0.043 3.957 26 O -0.374 6.374 27 C 0.046 3.954 28 C -0.080 4.080 29 C -0.170 4.170 30 H 0.282 0.718 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.396 0.604 36 H 0.399 0.601 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.375 0.625 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -16.692 15.318 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.081 3.919 14 N -0.387 5.387 15 C 0.398 3.602 16 O -0.482 6.482 17 N -0.405 5.405 18 C -0.017 4.017 19 C 0.044 3.956 20 H 0.129 0.871 21 O -0.360 6.360 22 C -0.173 4.173 23 H 0.116 0.884 24 C -0.184 4.184 25 C -0.033 4.033 26 O -0.293 6.293 27 C -0.031 4.031 28 C -0.099 4.099 29 C -0.189 4.189 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.224 0.776 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.346 -17.150 14.792 22.650 hybrid contribution 0.564 1.292 0.186 1.422 sum 0.910 -15.858 14.979 21.833 Atomic orbital electron populations 1.69826 1.07655 1.29463 1.34222 1.25955 0.94745 1.01487 0.92131 0.86296 0.80763 0.80540 0.79162 1.19477 1.19950 1.18357 1.19651 0.98186 0.91276 1.39649 0.90288 1.17673 0.90881 0.92065 0.88013 1.20966 1.04000 0.92856 1.07106 1.20413 0.94908 0.96487 0.97002 1.18995 1.02561 0.92626 1.10468 1.19797 0.95644 0.92932 0.83573 1.45719 1.39609 1.24926 1.28457 1.16104 0.82252 0.81476 0.80385 1.90887 1.32130 1.60864 1.64307 1.44991 1.40868 1.27994 1.26665 1.21836 0.98243 0.87269 0.94385 1.22170 1.00758 0.86083 0.86596 0.87075 1.86623 1.32032 1.56495 1.60884 1.23208 0.96177 0.98669 0.99210 0.88414 1.22928 0.98791 1.02910 0.93754 1.23452 0.83798 1.01253 0.94818 1.89154 1.41307 1.64333 1.34478 1.23489 0.95870 0.95620 0.88104 1.20566 0.98009 0.92595 0.98732 1.21308 0.99464 0.96779 1.01369 0.90680 0.88912 0.89382 0.92644 0.92576 0.77003 0.76688 0.91469 0.90796 0.77564 0.90565 0.89469 0.89133 0.91921 0.92274 0.88419 0.89388 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.72 10.97 55.55 0.61 -19.11 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 8 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 9 C 0.12 2.98 5.57 -106.83 -0.60 2.38 16 10 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 11 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 12 C -0.24 -5.04 5.27 -104.33 -0.55 -5.59 16 13 C 0.20 3.70 5.79 -5.20 -0.03 3.67 16 14 N -0.73 -11.53 5.55 -66.42 -0.37 -11.90 16 15 C 0.70 10.96 8.57 -86.92 -0.74 10.22 16 16 O -0.60 -11.75 16.34 5.29 0.09 -11.66 16 17 N -0.75 -8.39 5.51 -65.22 -0.36 -8.75 16 18 C 0.11 0.97 5.07 -4.04 -0.02 0.95 16 19 C 0.10 0.66 2.66 -26.73 -0.07 0.59 16 20 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 21 O -0.55 -3.97 12.72 -35.23 -0.45 -4.41 16 22 C -0.15 -0.88 3.02 -89.06 -0.27 -1.15 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 24 C -0.15 -0.80 6.51 -25.16 -0.16 -0.96 16 25 C 0.04 0.27 7.63 37.94 0.29 0.56 16 26 O -0.37 -3.25 11.65 -35.23 -0.41 -3.66 16 27 C 0.05 0.30 6.26 37.93 0.24 0.54 16 28 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 29 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 30 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 31 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 32 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 33 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.40 5.64 8.48 -40.82 -0.35 5.30 16 36 H 0.40 3.76 8.49 -40.82 -0.35 3.42 16 37 H 0.07 0.63 7.61 -51.93 -0.40 0.24 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.37 2.02 6.83 45.56 0.31 2.33 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.48 7.52 -51.92 -0.39 0.09 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.33 5.82 -51.92 -0.30 0.03 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 47 H 0.12 3.03 6.18 -52.48 -0.32 2.71 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -30.36 386.47 -10.34 -40.70 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -6.41 Total: 13.48 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.83 Total: -13.45 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.12 Total: -39.75 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.77 Total: -19.74 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.36 -10.34 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519596058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.305 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.89 seconds