Wall clock time and date at job start Wed Apr 1 2020 00:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47043 * 274.66047 * 3 2 1 5 5 H 1.48497 * 109.47451 * 34.66303 * 3 2 1 6 6 H 1.48496 * 109.47002 * 154.66554 * 3 2 1 7 7 C 1.39938 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99822 * 162.23688 * 7 2 1 9 9 C 1.41398 * 120.00353 * 342.22725 * 7 2 1 10 10 C 1.40714 * 120.24144 * 155.29155 * 9 7 2 11 11 C 1.37615 * 119.74360 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24815 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74810 * 179.97438 * 12 11 10 14 14 N 1.46492 * 109.47548 * 89.99800 * 13 12 11 15 15 C 1.34771 * 120.00242 * 179.72417 * 14 13 12 16 16 O 1.21583 * 120.00122 * 0.27394 * 15 14 13 17 17 N 1.34783 * 120.00086 * 180.27640 * 15 14 13 18 18 C 1.46502 * 119.99841 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46880 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.46904 * 304.99613 * 19 18 17 21 21 O 1.42900 * 109.47034 * 65.00064 * 19 18 17 22 22 C 1.53003 * 109.46784 * 184.99675 * 19 18 17 23 23 H 1.09000 * 110.45657 * 57.39391 * 22 19 18 24 24 C 1.54501 * 110.50829 * 179.97438 * 22 19 18 25 25 C 1.54484 * 104.06557 * 118.64455 * 24 22 19 26 26 O 1.44433 * 104.79721 * 23.97770 * 25 24 22 27 27 C 1.44418 * 105.27572 * 319.49066 * 26 25 24 28 28 C 1.38631 * 120.50200 * 0.24828 * 12 11 10 29 29 C 1.37625 * 120.24446 * 359.45202 * 28 12 11 30 30 H 0.97002 * 120.00309 * 0.02562 * 1 2 3 31 31 H 1.08004 * 120.12736 * 0.04420 * 10 9 7 32 32 H 1.08007 * 119.87825 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.46951 * 329.98883 * 13 12 11 34 34 H 1.09002 * 109.46502 * 209.99769 * 13 12 11 35 35 H 0.97007 * 119.99798 * 359.97438 * 14 13 12 36 36 H 0.96997 * 120.00090 * 359.97438 * 17 15 14 37 37 H 1.09000 * 109.46810 * 299.99412 * 18 17 15 38 38 H 1.08994 * 109.47036 * 59.99388 * 18 17 15 39 39 H 0.96699 * 114.00032 * 59.99526 * 21 19 18 40 40 H 1.09003 * 110.51476 * 237.28853 * 24 22 19 41 41 H 1.09008 * 110.51302 * 0.02562 * 24 22 19 42 42 H 1.08996 * 110.37319 * 142.80266 * 25 24 22 43 43 H 1.08997 * 110.37526 * 265.15118 * 25 24 22 44 44 H 1.09008 * 110.36978 * 281.67831 * 27 26 25 45 45 H 1.08999 * 110.37176 * 159.34819 * 27 26 25 46 46 H 1.08003 * 119.87909 * 179.70669 * 28 12 11 47 47 H 1.08004 * 120.12349 * 180.27340 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4924 2.6223 0.7963 6 1 3.5856 1.4138 0.5991 7 6 2.0079 -1.2119 -0.0005 8 1 3.0493 -1.2341 -0.2859 9 6 1.3515 -2.4074 0.3727 10 6 1.8218 -3.6492 -0.0930 11 6 1.1749 -4.8063 0.2762 12 6 0.0635 -4.7517 1.1033 13 6 -0.6367 -6.0258 1.5001 14 7 -0.0448 -6.5438 2.7359 15 6 -0.5181 -7.6799 3.2852 16 8 -1.4331 -8.2775 2.7524 17 7 0.0228 -8.1535 4.4253 18 6 -0.4914 -9.3887 5.0221 19 6 0.2908 -9.7022 6.2991 20 1 1.3563 -9.7398 6.0725 21 8 0.0459 -8.6827 7.2701 22 6 -0.1605 -11.0545 6.8546 23 1 -0.0235 -11.8376 6.1089 24 6 0.6158 -11.3955 8.1461 25 6 -0.4816 -11.4946 9.2288 26 8 -1.6909 -11.8018 8.5013 27 6 -1.6352 -10.9878 7.3096 28 6 -0.4119 -3.5334 1.5634 29 6 0.2230 -2.3640 1.2119 30 1 -0.4851 0.8400 -0.0004 31 1 2.6873 -3.6941 -0.7374 32 1 1.5337 -5.7606 -0.0803 33 1 -0.5249 -6.7642 0.7062 34 1 -1.6955 -5.8233 1.6614 35 1 0.6855 -6.0673 3.1608 36 1 0.7530 -7.6770 4.8502 37 1 -1.5469 -9.2635 5.2636 38 1 -0.3755 -10.2097 4.3146 39 1 -0.8839 -8.5926 7.5198 40 1 1.1344 -12.3484 8.0397 41 1 1.3209 -10.6005 8.3891 42 1 -0.2491 -12.2935 9.9328 43 1 -0.5850 -10.5442 9.7524 44 1 -1.9155 -9.9597 7.5390 45 1 -2.2889 -11.3973 6.5395 46 1 -1.2813 -3.5022 2.2034 47 1 -0.1464 -1.4164 1.5751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519596058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:28 Heat of formation + Delta-G solvation = -139.984886 kcal Electronic energy + Delta-G solvation = -27506.459776 eV Core-core repulsion = 23459.361753 eV Total energy + Delta-G solvation = -4047.098023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 19.22 seconds Orbital eigenvalues (eV) -41.27941 -40.66741 -39.47751 -38.13913 -36.32807 -35.28354 -35.03346 -33.36513 -32.08387 -31.18033 -30.71943 -29.02947 -27.90830 -25.49510 -24.70872 -23.01863 -22.88789 -22.03206 -21.80298 -21.26158 -19.43661 -19.23405 -18.18260 -17.62778 -17.34763 -17.11558 -16.90838 -16.37567 -16.28006 -15.95629 -15.73637 -15.57722 -15.38060 -15.12030 -14.95591 -14.70354 -14.23193 -13.90965 -13.84873 -13.80706 -13.38731 -13.23776 -12.93936 -12.91369 -12.80922 -12.72559 -12.39108 -12.22062 -12.16123 -11.77995 -11.67958 -11.51166 -11.42348 -11.29048 -11.04058 -10.97681 -10.74020 -10.35333 -9.70640 -9.39340 -9.28712 -8.66922 -6.36801 0.82629 1.13941 1.38765 1.44683 1.53702 1.87785 2.18780 2.19952 2.70314 2.98471 3.27307 3.44296 3.47516 3.73889 3.76594 3.86634 3.96675 4.13033 4.18254 4.23622 4.33219 4.34056 4.44435 4.53006 4.66214 4.67850 4.76469 4.81032 4.84655 4.87396 4.99563 5.04897 5.10273 5.14964 5.16509 5.35495 5.43162 5.47857 5.56982 5.68900 5.82077 5.88971 6.07741 6.08804 6.21109 6.36313 6.63855 6.68067 6.91839 7.00483 7.13682 7.61196 8.29872 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024793 B = 0.001722 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.082987 B =16258.378655 C =16707.327348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.242 4.242 11 C -0.067 4.067 12 C -0.226 4.226 13 C 0.213 3.787 14 N -0.729 5.729 15 C 0.697 3.303 16 O -0.641 6.641 17 N -0.731 5.731 18 C 0.106 3.894 19 C 0.119 3.881 20 H 0.121 0.879 21 O -0.562 6.562 22 C -0.147 4.147 23 H 0.104 0.896 24 C -0.141 4.141 25 C 0.038 3.962 26 O -0.400 6.400 27 C 0.040 3.960 28 C -0.081 4.081 29 C -0.192 4.192 30 H 0.289 0.711 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.405 0.595 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.382 0.618 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -17.584 16.317 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.083 3.917 10 C -0.262 4.262 11 C -0.086 4.086 12 C -0.228 4.228 13 C 0.090 3.910 14 N -0.383 5.383 15 C 0.397 3.603 16 O -0.523 6.523 17 N -0.387 5.387 18 C -0.019 4.019 19 C 0.059 3.941 20 H 0.138 0.862 21 O -0.370 6.370 22 C -0.166 4.166 23 H 0.122 0.878 24 C -0.179 4.179 25 C -0.038 4.038 26 O -0.319 6.319 27 C -0.036 4.036 28 C -0.100 4.100 29 C -0.211 4.211 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.241 0.759 36 H 0.247 0.753 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.122 0.878 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.236 -18.058 15.836 24.050 hybrid contribution 0.226 1.387 -0.062 1.407 sum 1.462 -16.671 15.773 22.997 Atomic orbital electron populations 1.69876 1.09050 1.30696 1.35082 1.26776 0.95466 1.04600 0.91162 0.85205 0.79258 0.75990 0.79371 1.18802 1.19097 1.18127 1.19895 0.98446 0.92510 1.41689 0.90443 1.18016 0.91700 0.93151 0.88866 1.21157 1.04578 0.93015 1.07446 1.20687 0.94550 0.96954 0.96379 1.19200 1.01683 0.93084 1.08823 1.19542 0.95104 0.91661 0.84699 1.45394 1.39834 1.25242 1.27860 1.16194 0.81906 0.81074 0.81155 1.90867 1.33915 1.61889 1.65654 1.44885 1.40424 1.28342 1.25096 1.22021 0.98501 0.86023 0.95371 1.22057 1.00716 0.86184 0.85143 0.86162 1.86612 1.32852 1.56725 1.60837 1.23154 0.95634 0.98348 0.99504 0.87814 1.22901 0.98473 1.03399 0.93119 1.23593 0.83315 1.01790 0.95111 1.89128 1.42498 1.64984 1.35324 1.23600 0.96496 0.95865 0.87679 1.20752 0.98195 0.92406 0.98674 1.21259 1.00321 0.97039 1.02528 0.90031 0.88318 0.86591 0.92470 0.93088 0.75938 0.75334 0.91857 0.91012 0.76711 0.89804 0.89244 0.88294 0.91618 0.91468 0.88506 0.87846 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.18 10.97 21.82 0.24 -41.94 16 2 C 0.04 1.75 5.14 85.25 0.44 2.18 16 3 Si 0.98 37.14 29.60 68.60 2.03 39.18 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.06 9.05 23.46 0.21 -25.84 16 8 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.09 4.46 5.57 -21.29 -0.12 4.34 16 10 C -0.24 -11.37 9.80 22.73 0.22 -11.15 16 11 C -0.07 -2.75 9.67 22.22 0.21 -2.54 16 12 C -0.23 -9.01 5.27 -19.67 -0.10 -9.11 16 13 C 0.21 7.39 5.79 85.64 0.50 7.88 16 14 N -0.73 -21.43 5.55 -482.31 -2.68 -24.10 16 15 C 0.70 20.61 8.57 179.05 1.53 22.14 16 16 O -0.64 -24.17 16.34 -3.98 -0.07 -24.23 16 17 N -0.73 -14.78 5.51 -478.53 -2.64 -17.41 16 18 C 0.11 1.68 5.07 86.38 0.44 2.12 16 19 C 0.12 1.23 2.66 30.60 0.08 1.32 16 20 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 21 O -0.56 -6.74 12.72 -148.98 -1.89 -8.64 16 22 C -0.15 -1.39 3.02 -9.78 -0.03 -1.42 16 23 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 24 C -0.14 -1.25 6.51 31.61 0.21 -1.04 16 25 C 0.04 0.42 7.63 72.49 0.55 0.97 16 26 O -0.40 -6.54 11.65 -148.98 -1.74 -8.27 16 27 C 0.04 0.47 6.26 72.48 0.45 0.93 16 28 C -0.08 -3.59 9.67 22.22 0.21 -3.37 16 29 C -0.19 -9.75 8.70 22.73 0.20 -9.56 16 30 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 31 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.41 10.60 8.48 -92.70 -0.79 9.81 16 36 H 0.41 6.63 8.49 -92.71 -0.79 5.84 16 37 H 0.06 1.10 7.61 -2.39 -0.02 1.08 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.38 3.35 6.83 -74.06 -0.51 2.84 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 0.77 7.52 -2.38 -0.02 0.76 16 42 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.66 5.82 -2.38 -0.01 0.64 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 47 H 0.10 5.36 6.18 -2.91 -0.02 5.34 16 Total: -1.00 -65.90 386.47 -2.79 -68.69 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -1.06 Total: 38.89 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 5.01 Total: -22.15 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -5.07 Total: -83.46 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -3.70 Total: -41.14 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.18 kcal Total: -65.90 -2.79 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519596058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.296 kcal (2) G-P(sol) polarization free energy of solvation -65.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.22 seconds