Wall clock time and date at job start Wed Apr 1 2020 00:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48509 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47487 * 300.00016 * 3 2 1 6 6 H 1.48503 * 109.46904 * 60.00479 * 3 2 1 7 7 C 1.39947 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99481 * 197.87127 * 7 2 1 9 9 C 1.41389 * 120.00268 * 17.87240 * 7 2 1 10 10 C 1.40718 * 120.24567 * 204.38438 * 9 7 2 11 11 C 1.37615 * 119.74750 * 179.97438 * 10 9 7 12 12 C 1.38632 * 120.24783 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.75023 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.47461 * 90.00187 * 13 12 11 15 15 C 1.34769 * 120.00501 * 180.02562 * 14 13 12 16 16 O 1.21594 * 119.99909 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00197 * 180.02562 * 15 14 13 18 18 C 1.46500 * 119.99592 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46713 * 179.97438 * 18 17 15 20 20 H 1.08996 * 110.33452 * 57.74764 * 19 18 17 21 21 C 1.54484 * 110.37361 * 179.97438 * 19 18 17 22 22 C 1.54510 * 104.18261 * 142.85164 * 21 19 18 23 23 C 1.54792 * 103.91576 * 0.10488 * 22 21 19 24 24 H 1.08991 * 110.44106 * 94.77471 * 23 22 21 25 25 C 1.53003 * 110.40135 * 217.07458 * 23 22 21 26 26 O 1.42901 * 109.47010 * 181.84786 * 25 23 22 27 27 O 1.44427 * 110.46740 * 295.43568 * 19 18 17 28 28 C 1.38634 * 120.50092 * 0.27644 * 12 11 10 29 29 C 1.37625 * 120.24863 * 359.44903 * 28 12 11 30 30 H 0.97001 * 120.00072 * 359.97438 * 1 2 3 31 31 H 1.08010 * 120.12570 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.87437 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47177 * 330.00147 * 13 12 11 34 34 H 1.08996 * 109.47127 * 210.00540 * 13 12 11 35 35 H 0.97003 * 119.99107 * 0.02562 * 14 13 12 36 36 H 0.96996 * 120.00033 * 359.97438 * 17 15 14 37 37 H 1.08995 * 109.47590 * 59.99650 * 18 17 15 38 38 H 1.09000 * 109.47098 * 299.99383 * 18 17 15 39 39 H 1.08997 * 110.50704 * 261.56909 * 21 19 18 40 40 H 1.08999 * 110.50658 * 24.13887 * 21 19 18 41 41 H 1.09005 * 110.50549 * 118.71476 * 22 21 19 42 42 H 1.09000 * 110.50745 * 241.41776 * 22 21 19 43 43 H 1.08997 * 109.46852 * 301.84557 * 25 23 22 44 44 H 1.08998 * 109.47226 * 61.84860 * 25 23 22 45 45 H 0.96698 * 114.00164 * 179.97438 * 26 25 23 46 46 H 1.07999 * 119.87814 * 179.69844 * 28 12 11 47 47 H 1.07994 * 120.13011 * 180.27400 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2865 9 6 1.3521 -2.4068 -0.3769 10 6 1.8256 -3.6500 0.0818 11 6 1.1791 -4.8064 -0.2904 12 6 0.0650 -4.7497 -1.1135 13 6 -0.6347 -6.0230 -1.5137 14 7 -1.6768 -6.3366 -0.5330 15 6 -2.4371 -7.4387 -0.6865 16 8 -2.2583 -8.1727 -1.6394 17 7 -3.3962 -7.7269 0.2154 18 6 -4.2221 -8.9253 0.0487 19 6 -5.2250 -9.0177 1.2005 20 1 -5.8444 -8.1215 1.2363 21 6 -6.1085 -10.2754 1.0449 22 6 -6.3089 -10.7786 2.4919 23 6 -5.5225 -9.7603 3.3525 24 1 -6.1871 -8.9778 3.7184 25 6 -4.8385 -10.4679 4.5240 26 8 -4.1548 -9.5049 5.3285 27 8 -4.5362 -9.2031 2.4563 28 6 -0.4072 -3.5309 -1.5755 29 6 0.2202 -2.3613 -1.2115 30 1 -0.4850 0.8400 0.0004 31 1 2.6927 -3.6964 0.7242 32 1 1.5405 -5.7617 0.0607 33 1 0.0876 -6.8386 -1.5497 34 1 -1.0875 -5.8952 -2.4968 35 1 -1.8196 -5.7508 0.2269 36 1 -3.5390 -7.1412 0.9753 37 1 -3.5845 -9.8093 0.0508 38 1 -4.7597 -8.8673 -0.8978 39 1 -7.0665 -10.0157 0.5945 40 1 -5.5976 -11.0291 0.4457 41 1 -7.3662 -10.7678 2.7569 42 1 -5.8952 -11.7803 2.6086 43 1 -5.5885 -10.9789 5.1277 44 1 -4.1227 -11.1954 4.1412 45 1 -3.6975 -9.8835 6.0918 46 1 -1.2730 -3.4988 -2.2202 47 1 -0.1520 -1.4126 -1.5690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567757621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:51 Heat of formation + Delta-G solvation = -117.701032 kcal Electronic energy + Delta-G solvation = -27475.157837 eV Core-core repulsion = 23429.026115 eV Total energy + Delta-G solvation = -4046.131723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -40.21073 -39.39459 -37.67328 -36.93032 -34.93334 -34.35458 -33.34944 -32.56533 -31.25720 -30.11749 -29.31017 -27.66179 -26.41147 -24.03803 -23.20232 -21.84238 -21.38867 -21.03190 -20.47393 -20.03451 -18.07150 -17.78302 -17.35614 -16.86357 -16.50076 -16.27891 -15.45404 -15.37270 -15.10877 -14.41013 -14.31285 -14.17893 -14.09919 -13.84641 -13.75233 -13.31711 -13.03935 -12.85981 -12.48773 -12.18520 -12.06768 -11.99224 -11.85585 -11.67706 -11.60853 -11.53036 -11.13796 -11.05688 -10.99934 -10.67191 -10.43469 -10.41239 -10.07162 -9.92765 -9.64362 -9.44804 -9.20028 -9.02408 -8.36578 -7.52958 -7.41094 -6.84031 -4.42954 2.55652 2.95782 3.02409 3.04832 3.09640 3.23654 3.42757 3.58037 3.69533 3.88019 4.10286 4.38239 4.45673 4.53066 4.68668 4.78637 4.81904 4.83478 4.96536 5.05538 5.08810 5.27278 5.34664 5.49317 5.58711 5.63115 5.64509 5.76319 5.88334 6.01470 6.29853 6.36969 6.40988 6.49562 6.64051 6.90851 6.99537 7.01841 7.22384 7.27283 7.28626 7.31504 7.55492 7.79237 7.99518 8.06667 8.23191 8.41206 8.57661 8.82381 8.90511 8.96180 10.09978 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.001966 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.781175 B =14238.665267 C =15158.786096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.229 4.229 11 C -0.069 4.069 12 C -0.243 4.243 13 C 0.203 3.797 14 N -0.734 5.734 15 C 0.700 3.300 16 O -0.605 6.605 17 N -0.748 5.748 18 C 0.150 3.850 19 C 0.060 3.940 20 H 0.077 0.923 21 C -0.146 4.146 22 C -0.147 4.147 23 C 0.074 3.926 24 H 0.076 0.924 25 C 0.082 3.918 26 O -0.565 6.565 27 O -0.351 6.351 28 C -0.081 4.081 29 C -0.170 4.170 30 H 0.281 0.719 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.397 0.603 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.380 0.620 46 H 0.088 0.912 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 -17.166 7.158 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.245 4.245 13 C 0.081 3.919 14 N -0.388 5.388 15 C 0.400 3.600 16 O -0.485 6.485 17 N -0.405 5.405 18 C 0.025 3.975 19 C 0.001 3.999 20 H 0.095 0.905 21 C -0.185 4.185 22 C -0.185 4.185 23 C 0.016 3.984 24 H 0.094 0.906 25 C 0.004 3.996 26 O -0.370 6.370 27 O -0.270 6.270 28 C -0.100 4.100 29 C -0.189 4.189 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.231 0.769 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.227 0.773 46 H 0.106 0.894 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.243 -17.227 5.857 23.107 hybrid contribution 0.108 0.885 1.222 1.513 sum -14.135 -16.342 7.080 22.737 Atomic orbital electron populations 1.69831 1.07642 1.29291 1.34526 1.25952 0.94749 1.01475 0.92159 0.86257 0.81052 0.80814 0.78613 1.18324 1.19630 1.19946 1.19683 0.98230 0.91277 1.39524 0.90261 1.17674 0.90902 0.92056 0.88065 1.20978 1.03983 0.92814 1.07133 1.20421 0.95126 0.96524 0.96746 1.19018 1.01863 0.92808 1.10770 1.19793 0.87374 0.94740 0.90004 1.45701 1.37446 1.25496 1.30170 1.16073 0.79368 0.82026 0.82569 1.90872 1.72966 1.51813 1.32853 1.45011 1.38025 1.28461 1.28975 1.21164 0.91950 0.88336 0.96006 1.23301 0.93288 0.98051 0.85227 0.90524 1.22897 1.00686 0.97711 0.97172 1.22958 1.01062 0.99860 0.94619 1.23070 0.90141 0.95083 0.90156 0.90610 1.22217 0.95544 0.90786 0.91010 1.86562 1.71351 1.36325 1.42811 1.89309 1.33255 1.83807 1.20679 1.20569 0.98018 0.92554 0.98842 1.21312 0.99549 0.96761 1.01297 0.90802 0.88917 0.89342 0.92695 0.92637 0.76904 0.76691 0.91113 0.90430 0.89900 0.89872 0.90027 0.90244 0.92367 0.92738 0.77268 0.89388 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.90 10.95 55.55 0.61 -19.29 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -11.92 9.05 -37.74 -0.34 -12.26 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.12 3.02 5.58 -106.83 -0.60 2.43 16 10 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 11 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 12 C -0.24 -5.18 5.27 -104.33 -0.55 -5.73 16 13 C 0.20 3.89 5.79 -5.19 -0.03 3.86 16 14 N -0.73 -12.75 5.55 -66.42 -0.37 -13.12 16 15 C 0.70 12.23 8.57 -86.93 -0.74 11.49 16 16 O -0.61 -12.62 16.34 5.28 0.09 -12.54 16 17 N -0.75 -10.24 5.52 -65.23 -0.36 -10.60 16 18 C 0.15 1.72 5.29 -4.04 -0.02 1.70 16 19 C 0.06 0.53 3.32 -25.95 -0.09 0.45 16 20 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -0.93 6.62 -25.16 -0.17 -1.09 16 22 C -0.15 -0.82 6.65 -24.99 -0.17 -0.99 16 23 C 0.07 0.60 3.58 -25.79 -0.09 0.51 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 C 0.08 0.60 6.66 37.16 0.25 0.85 16 26 O -0.57 -5.27 13.65 -36.45 -0.50 -5.77 16 27 O -0.35 -3.95 11.00 -36.45 -0.40 -4.35 16 28 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 29 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.40 6.48 8.48 -40.82 -0.35 6.14 16 36 H 0.40 4.89 8.49 -40.82 -0.35 4.54 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.39 7.88 -51.93 -0.41 -0.02 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 1.73 9.12 45.56 0.42 2.15 16 46 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 47 H 0.12 3.10 6.15 -52.49 -0.32 2.78 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -32.27 392.96 -10.62 -42.89 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -6.46 Total: 15.32 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -4.12 Total: -11.72 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.12 Total: -43.01 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.81 Total: -22.65 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.27 -10.62 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567757621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.812 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds