Wall clock time and date at job start Wed Apr 1 2020 00:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48509 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47487 * 300.00016 * 3 2 1 6 6 H 1.48503 * 109.46904 * 60.00479 * 3 2 1 7 7 C 1.39947 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99481 * 197.87127 * 7 2 1 9 9 C 1.41389 * 120.00268 * 17.87240 * 7 2 1 10 10 C 1.40718 * 120.24567 * 204.38438 * 9 7 2 11 11 C 1.37615 * 119.74750 * 179.97438 * 10 9 7 12 12 C 1.38632 * 120.24783 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.75023 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.47461 * 90.00187 * 13 12 11 15 15 C 1.34769 * 120.00501 * 180.02562 * 14 13 12 16 16 O 1.21594 * 119.99909 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00197 * 180.02562 * 15 14 13 18 18 C 1.46500 * 119.99592 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46713 * 179.97438 * 18 17 15 20 20 H 1.08996 * 110.33452 * 57.74764 * 19 18 17 21 21 C 1.54484 * 110.37361 * 179.97438 * 19 18 17 22 22 C 1.54510 * 104.18261 * 142.85164 * 21 19 18 23 23 C 1.54792 * 103.91576 * 0.10488 * 22 21 19 24 24 H 1.08991 * 110.44106 * 94.77471 * 23 22 21 25 25 C 1.53003 * 110.40135 * 217.07458 * 23 22 21 26 26 O 1.42901 * 109.47010 * 181.84786 * 25 23 22 27 27 O 1.44427 * 110.46740 * 295.43568 * 19 18 17 28 28 C 1.38634 * 120.50092 * 0.27644 * 12 11 10 29 29 C 1.37625 * 120.24863 * 359.44903 * 28 12 11 30 30 H 0.97001 * 120.00072 * 359.97438 * 1 2 3 31 31 H 1.08010 * 120.12570 * 0.02562 * 10 9 7 32 32 H 1.08003 * 119.87437 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47177 * 330.00147 * 13 12 11 34 34 H 1.08996 * 109.47127 * 210.00540 * 13 12 11 35 35 H 0.97003 * 119.99107 * 0.02562 * 14 13 12 36 36 H 0.96996 * 120.00033 * 359.97438 * 17 15 14 37 37 H 1.08995 * 109.47590 * 59.99650 * 18 17 15 38 38 H 1.09000 * 109.47098 * 299.99383 * 18 17 15 39 39 H 1.08997 * 110.50704 * 261.56909 * 21 19 18 40 40 H 1.08999 * 110.50658 * 24.13887 * 21 19 18 41 41 H 1.09005 * 110.50549 * 118.71476 * 22 21 19 42 42 H 1.09000 * 110.50745 * 241.41776 * 22 21 19 43 43 H 1.08997 * 109.46852 * 301.84557 * 25 23 22 44 44 H 1.08998 * 109.47226 * 61.84860 * 25 23 22 45 45 H 0.96698 * 114.00164 * 179.97438 * 26 25 23 46 46 H 1.07999 * 119.87814 * 179.69844 * 28 12 11 47 47 H 1.07994 * 120.13011 * 180.27400 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8835 2.3963 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2865 9 6 1.3521 -2.4068 -0.3769 10 6 1.8256 -3.6500 0.0818 11 6 1.1791 -4.8064 -0.2904 12 6 0.0650 -4.7497 -1.1135 13 6 -0.6347 -6.0230 -1.5137 14 7 -1.6768 -6.3366 -0.5330 15 6 -2.4371 -7.4387 -0.6865 16 8 -2.2583 -8.1727 -1.6394 17 7 -3.3962 -7.7269 0.2154 18 6 -4.2221 -8.9253 0.0487 19 6 -5.2250 -9.0177 1.2005 20 1 -5.8444 -8.1215 1.2363 21 6 -6.1085 -10.2754 1.0449 22 6 -6.3089 -10.7786 2.4919 23 6 -5.5225 -9.7603 3.3525 24 1 -6.1871 -8.9778 3.7184 25 6 -4.8385 -10.4679 4.5240 26 8 -4.1548 -9.5049 5.3285 27 8 -4.5362 -9.2031 2.4563 28 6 -0.4072 -3.5309 -1.5755 29 6 0.2202 -2.3613 -1.2115 30 1 -0.4850 0.8400 0.0004 31 1 2.6927 -3.6964 0.7242 32 1 1.5405 -5.7617 0.0607 33 1 0.0876 -6.8386 -1.5497 34 1 -1.0875 -5.8952 -2.4968 35 1 -1.8196 -5.7508 0.2269 36 1 -3.5390 -7.1412 0.9753 37 1 -3.5845 -9.8093 0.0508 38 1 -4.7597 -8.8673 -0.8978 39 1 -7.0665 -10.0157 0.5945 40 1 -5.5976 -11.0291 0.4457 41 1 -7.3662 -10.7678 2.7569 42 1 -5.8952 -11.7803 2.6086 43 1 -5.5885 -10.9789 5.1277 44 1 -4.1227 -11.1954 4.1412 45 1 -3.6975 -9.8835 6.0918 46 1 -1.2730 -3.4988 -2.2202 47 1 -0.1520 -1.4126 -1.5690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567757621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:49 Heat of formation + Delta-G solvation = -141.687760 kcal Electronic energy + Delta-G solvation = -27476.197980 eV Core-core repulsion = 23429.026115 eV Total energy + Delta-G solvation = -4047.171865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.40 seconds Orbital eigenvalues (eV) -41.17662 -40.48649 -39.46258 -37.58042 -36.40791 -35.69135 -35.05253 -33.15715 -32.37583 -31.55418 -31.15299 -28.87196 -27.72822 -25.40977 -24.22612 -22.89858 -22.51623 -22.14213 -21.82654 -21.66183 -19.37454 -19.23809 -18.40746 -17.73654 -17.34801 -17.15084 -17.09624 -16.45018 -16.32142 -15.99343 -15.60415 -15.46922 -15.29089 -14.90202 -14.82755 -14.63328 -14.20929 -14.02353 -13.83850 -13.81683 -13.49291 -13.32837 -12.82428 -12.71285 -12.68033 -12.61312 -12.49241 -12.32719 -12.11316 -12.08445 -11.54382 -11.53289 -11.36036 -11.28321 -11.02695 -10.99489 -10.75057 -10.35955 -9.71462 -9.40006 -9.29115 -8.67203 -6.36962 0.82105 1.13576 1.38633 1.44723 1.53746 1.88746 2.17321 2.20136 2.68758 2.76847 3.21986 3.40690 3.53508 3.75710 3.86514 3.95381 4.11056 4.14914 4.19627 4.29840 4.33268 4.42171 4.46232 4.52225 4.56011 4.67141 4.68702 4.72532 4.82442 4.94130 4.96604 5.04327 5.11426 5.14628 5.15875 5.35214 5.42916 5.47007 5.56439 5.68537 5.87914 5.90489 6.05512 6.08530 6.20943 6.35772 6.67658 6.88154 6.91547 7.00012 7.09712 7.58657 8.29502 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015257 B = 0.001966 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.781175 B =14238.665267 C =15158.786096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.244 4.244 11 C -0.068 4.068 12 C -0.226 4.226 13 C 0.213 3.787 14 N -0.731 5.731 15 C 0.699 3.301 16 O -0.639 6.639 17 N -0.735 5.735 18 C 0.148 3.852 19 C 0.062 3.938 20 H 0.085 0.915 21 C -0.143 4.143 22 C -0.138 4.138 23 C 0.062 3.938 24 H 0.072 0.928 25 C 0.078 3.922 26 O -0.596 6.596 27 O -0.384 6.384 28 C -0.081 4.081 29 C -0.192 4.192 30 H 0.289 0.711 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.403 0.597 36 H 0.407 0.593 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.397 0.603 46 H 0.105 0.895 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.547 -18.207 7.711 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.524 4.524 8 H 0.094 0.906 9 C 0.083 3.917 10 C -0.263 4.263 11 C -0.087 4.087 12 C -0.228 4.228 13 C 0.090 3.910 14 N -0.385 5.385 15 C 0.398 3.602 16 O -0.522 6.522 17 N -0.391 5.391 18 C 0.024 3.976 19 C 0.004 3.996 20 H 0.102 0.898 21 C -0.181 4.181 22 C -0.176 4.176 23 C 0.005 3.995 24 H 0.090 0.910 25 C 0.001 3.999 26 O -0.404 6.404 27 O -0.304 6.304 28 C -0.100 4.100 29 C -0.212 4.212 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.246 0.754 46 H 0.123 0.877 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.609 -18.291 6.456 24.898 hybrid contribution 0.460 1.057 1.078 1.578 sum -15.149 -17.234 7.533 24.151 Atomic orbital electron populations 1.69871 1.08973 1.30645 1.34946 1.26775 0.95519 1.04561 0.91187 0.85160 0.79434 0.76167 0.78977 1.18222 1.18874 1.18989 1.19911 0.98428 0.92538 1.41566 0.90566 1.18012 0.91704 0.93084 0.88886 1.21162 1.04570 0.93009 1.07590 1.20682 0.94838 0.96927 0.96224 1.19201 1.01236 0.93230 1.09150 1.19592 0.87696 0.93433 0.90317 1.45457 1.37223 1.25816 1.30041 1.16158 0.79779 0.81542 0.82683 1.90849 1.74051 1.52841 1.34439 1.44988 1.36959 1.29022 1.28156 1.21331 0.91938 0.86677 0.97665 1.23326 0.92650 0.99859 0.83762 0.89765 1.22923 1.00944 0.96312 0.97954 1.22953 1.01992 0.99354 0.93280 1.23321 0.89979 0.95770 0.90457 0.91013 1.22382 0.96134 0.90348 0.91034 1.86507 1.71981 1.37988 1.43951 1.89272 1.35015 1.84372 1.21776 1.20758 0.98217 0.92293 0.98702 1.21270 1.00377 0.97057 1.02449 0.90003 0.88379 0.86833 0.92471 0.92633 0.76187 0.75739 0.92452 0.89854 0.87933 0.89862 0.87850 0.89397 0.89455 0.92942 0.75351 0.87696 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.16 10.95 21.83 0.24 -41.92 16 2 C 0.04 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 37.75 29.60 68.60 2.03 39.78 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.50 -26.51 9.05 23.46 0.21 -26.30 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.09 4.59 5.58 -21.29 -0.12 4.47 16 10 C -0.24 -11.85 9.80 22.73 0.22 -11.63 16 11 C -0.07 -2.93 9.67 22.22 0.21 -2.72 16 12 C -0.23 -9.44 5.27 -19.68 -0.10 -9.54 16 13 C 0.21 7.83 5.79 85.63 0.50 8.33 16 14 N -0.73 -24.46 5.55 -482.30 -2.68 -27.14 16 15 C 0.70 23.72 8.57 179.06 1.53 25.26 16 16 O -0.64 -26.18 16.34 -4.01 -0.07 -26.25 16 17 N -0.74 -19.39 5.52 -478.53 -2.64 -22.04 16 18 C 0.15 3.24 5.29 86.38 0.46 3.70 16 19 C 0.06 1.02 3.32 31.10 0.10 1.12 16 20 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 21 C -0.14 -1.47 6.62 31.61 0.21 -1.26 16 22 C -0.14 -1.17 6.65 31.72 0.21 -0.96 16 23 C 0.06 0.92 3.58 31.21 0.11 1.04 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 C 0.08 1.02 6.66 71.98 0.48 1.50 16 26 O -0.60 -10.64 13.65 -147.81 -2.02 -12.66 16 27 O -0.38 -8.27 11.00 -147.81 -1.63 -9.90 16 28 C -0.08 -3.67 9.67 22.22 0.21 -3.45 16 29 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 30 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 31 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 34 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 35 H 0.40 12.63 8.48 -92.71 -0.79 11.84 16 36 H 0.41 9.53 8.49 -92.71 -0.79 8.74 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.86 7.87 -2.39 -0.02 0.85 16 41 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.09 0.61 7.88 -2.39 -0.02 0.59 16 43 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.40 3.33 9.12 -74.06 -0.68 2.66 16 46 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 47 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 Total: -1.00 -70.48 392.96 -3.12 -73.60 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -1.24 Total: 44.55 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.88 Total: -18.03 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -5.08 Total: -91.10 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -3.71 Total: -48.81 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -70.48 -3.12 -73.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567757621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.086 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.40 seconds