Wall clock time and date at job start Tue Mar 31 2020 21:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48502 * 109.47205 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.47292 * 29.99637 * 3 2 1 6 6 H 1.48496 * 109.47210 * 149.99854 * 3 2 1 7 7 C 1.37876 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99656 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99999 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47167 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.46562 * 60.00315 * 13 12 11 15 15 O 1.42901 * 109.47120 * 300.00228 * 13 12 11 16 16 C 1.52997 * 109.47211 * 180.02562 * 13 12 11 17 17 O 1.42898 * 109.47166 * 185.00224 * 16 13 12 18 18 C 1.35968 * 117.00023 * 180.02562 * 17 16 13 19 19 C 1.38742 * 119.98352 * 359.97438 * 18 17 16 20 20 C 1.38083 * 120.02967 * 179.69941 * 19 18 17 21 21 C 1.38845 * 119.96508 * 0.27298 * 20 19 18 22 22 C 1.38833 * 119.96637 * 0.02562 * 21 20 19 23 23 C 1.38078 * 120.02372 * 359.97438 * 22 21 20 24 24 C 1.50683 * 119.84686 * 179.97438 * 22 21 20 25 25 C 1.52896 * 109.53862 * 326.07134 * 24 22 21 26 26 C 1.50498 * 109.91071 * 48.63771 * 25 24 22 27 27 O 1.21299 * 119.62070 * 144.76598 * 26 25 24 28 28 N 1.34563 * 120.75639 * 324.73882 * 26 25 24 29 29 H 0.96997 * 120.00444 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46826 * 60.00420 * 9 7 2 31 31 H 1.09004 * 109.47170 * 300.00338 * 9 7 2 32 32 H 1.08995 * 109.47291 * 59.99499 * 10 9 7 33 33 H 1.09004 * 109.46981 * 299.99909 * 10 9 7 34 34 H 1.00907 * 110.99581 * 56.04451 * 11 10 9 35 35 H 1.09005 * 109.46834 * 60.00091 * 12 11 10 36 36 H 1.08991 * 109.47464 * 300.00149 * 12 11 10 37 37 H 0.96695 * 114.00329 * 300.00640 * 15 13 12 38 38 H 1.09003 * 109.47064 * 64.99793 * 16 13 12 39 39 H 1.09002 * 109.47059 * 305.00529 * 16 13 12 40 40 H 1.08002 * 119.98813 * 359.97438 * 19 18 17 41 41 H 1.08000 * 120.01595 * 180.29309 * 20 19 18 42 42 H 1.07991 * 120.01131 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46663 * 206.04428 * 24 22 21 44 44 H 1.08997 * 109.44192 * 86.08311 * 24 22 21 45 45 H 1.08995 * 109.40019 * 288.49735 * 25 24 22 46 46 H 1.09000 * 109.39843 * 168.76694 * 25 24 22 47 47 H 0.96996 * 119.78202 * 180.82647 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4906 -2.6364 0.0001 12 6 6.0171 -4.0078 0.0009 13 6 7.5466 -3.9669 0.0002 14 1 7.8963 -3.4430 0.8898 15 8 8.0043 -3.2816 -1.1672 16 6 8.0949 -5.3953 0.0004 17 8 9.5187 -5.3589 0.1173 18 6 10.1675 -6.5537 0.1323 19 6 9.4467 -7.7354 0.0369 20 6 10.1052 -8.9491 0.0458 21 6 11.4888 -8.9866 0.1560 22 6 12.2087 -7.8039 0.2576 23 6 11.5493 -6.5908 0.2486 24 6 13.7101 -7.8479 0.3777 25 6 14.1234 -9.0864 1.1732 26 6 13.4187 -10.3014 0.6329 27 8 13.9917 -11.3705 0.6196 28 7 12.1600 -10.2155 0.1647 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6796 0.8895 31 1 3.8746 -0.6806 -0.8905 32 1 3.6579 -3.1505 -0.8896 33 1 3.6586 -3.1500 0.8904 34 1 5.8521 -2.1101 0.7815 35 1 5.6676 -4.5316 -0.8889 36 1 5.6676 -4.5307 0.8910 37 1 7.7295 -3.6930 -1.9979 38 1 7.8193 -5.8904 -0.9308 39 1 7.6751 -5.9455 0.8424 40 1 8.3705 -7.7058 -0.0488 41 1 9.5443 -9.8686 -0.0332 42 1 12.1096 -5.6709 0.3273 43 1 14.0598 -6.9526 0.8918 44 1 14.1525 -7.8912 -0.6175 45 1 13.8567 -8.9492 2.2211 46 1 15.2012 -9.2266 1.0908 47 1 11.7150 -11.0100 -0.1692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580769765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:29 Heat of formation + Delta-G solvation = -108.859743 kcal Electronic energy + Delta-G solvation = -26993.620957 eV Core-core repulsion = 22947.872622 eV Total energy + Delta-G solvation = -4045.748336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50814 -40.14705 -38.59394 -37.50791 -35.49310 -34.97907 -34.51365 -32.91782 -31.34309 -30.66756 -29.65661 -28.69800 -25.91617 -25.08598 -23.59683 -23.20409 -22.71988 -21.81092 -20.36995 -19.77622 -18.52782 -17.94671 -17.57757 -16.97950 -16.91686 -16.71786 -16.24217 -15.59236 -15.45335 -15.27563 -14.64644 -14.56020 -14.49882 -14.27386 -14.17231 -13.88688 -13.65113 -13.41153 -13.26319 -12.96470 -12.82555 -12.58630 -12.36434 -12.23069 -11.97940 -11.75741 -11.46094 -11.33756 -11.06683 -10.94822 -10.56270 -10.44772 -10.39330 -10.13874 -9.82589 -9.71235 -9.40857 -9.26490 -8.56164 -8.11486 -8.03925 -6.07161 -4.06066 0.68232 0.78014 2.04495 2.53545 2.68898 3.21719 3.32040 3.38981 3.43904 3.83502 4.05527 4.11015 4.20772 4.32028 4.36122 4.44384 4.53169 4.56061 4.62167 4.67883 4.80689 4.87842 4.89087 5.01481 5.15271 5.17931 5.19377 5.27642 5.30460 5.38355 5.53565 5.54589 5.65020 5.81272 5.84039 6.05579 6.09863 6.16709 6.24717 6.63893 6.70446 6.98645 7.05392 7.33337 7.49141 7.49557 7.58602 7.69519 7.83485 8.49221 8.96077 9.55162 11.06029 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.041317 B = 0.001484 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.520965 B =18867.336586 C =19349.158308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.683 5.683 12 C 0.030 3.970 13 C 0.115 3.885 14 H 0.106 0.894 15 O -0.537 6.537 16 C 0.027 3.973 17 O -0.300 6.300 18 C 0.119 3.881 19 C -0.181 4.181 20 C -0.106 4.106 21 C 0.114 3.886 22 C -0.082 4.082 23 C -0.117 4.117 24 C -0.078 4.078 25 C -0.138 4.138 26 C 0.520 3.480 27 O -0.533 6.533 28 N -0.661 5.661 29 H 0.263 0.737 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.373 0.627 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.715 -19.342 1.193 33.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.314 5.314 12 C -0.100 4.100 13 C 0.054 3.946 14 H 0.124 0.876 15 O -0.342 6.342 16 C -0.049 4.049 17 O -0.213 6.213 18 C 0.072 3.928 19 C -0.200 4.200 20 C -0.127 4.127 21 C 0.019 3.981 22 C -0.085 4.085 23 C -0.136 4.136 24 C -0.115 4.115 25 C -0.178 4.178 26 C 0.309 3.691 27 O -0.409 6.409 28 N -0.306 5.306 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.156 0.844 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.220 0.780 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 28.399 -19.025 1.045 34.199 hybrid contribution -0.832 -0.380 0.371 0.987 sum 27.568 -19.405 1.416 33.743 Atomic orbital electron populations 1.69911 1.06343 1.26986 1.50996 1.25004 0.94731 0.99255 0.94380 0.86727 0.80267 0.83336 0.78639 1.20196 1.21485 1.18948 1.21058 0.89353 0.94515 1.51271 0.91164 1.19543 0.96648 0.91693 0.96884 1.21990 0.83674 1.00320 0.99456 1.60475 1.09828 1.11043 1.50067 1.22500 0.93353 0.92805 1.01357 1.21904 0.92424 0.89352 0.90899 0.87623 1.86657 1.77456 1.54894 1.15147 1.23675 0.78951 1.00212 1.02054 1.86176 1.20749 1.26618 1.87785 1.18975 0.92014 0.84775 0.97016 1.21126 1.00539 0.91521 1.06852 1.20556 0.91616 0.98403 1.02136 1.17491 0.91416 0.84789 1.04419 1.19267 0.95459 0.90973 1.02763 1.20103 0.91266 0.97719 1.04511 1.20458 0.90936 0.98444 1.01673 1.21693 1.02218 0.91954 1.01913 1.20765 0.80873 0.90939 0.76524 1.90792 1.64821 1.30450 1.54846 1.43565 1.15129 1.09920 1.61999 0.92690 0.96789 0.95958 0.91731 0.95985 0.84423 0.90649 0.94566 0.78042 0.91412 0.91046 0.84746 0.85073 0.84248 0.88614 0.89507 0.87729 0.87167 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 10 C 0.07 1.41 5.62 -3.83 -0.02 1.39 16 11 N -0.68 -10.67 6.37 -113.78 -0.72 -11.39 16 12 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 13 C 0.11 1.15 3.46 -26.73 -0.09 1.05 16 14 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 15 O -0.54 -6.38 13.17 -40.11 -0.53 -6.91 16 16 C 0.03 0.21 4.37 37.16 0.16 0.38 16 17 O -0.30 -2.89 10.10 -24.52 -0.25 -3.14 16 18 C 0.12 0.99 6.69 -39.22 -0.26 0.73 16 19 C -0.18 -1.26 9.03 -39.45 -0.36 -1.62 16 20 C -0.11 -0.67 9.92 -39.41 -0.39 -1.06 16 21 C 0.11 0.77 6.51 -83.67 -0.54 0.22 16 22 C -0.08 -0.53 5.66 -104.47 -0.59 -1.12 16 23 C -0.12 -0.85 9.63 -39.46 -0.38 -1.23 16 24 C -0.08 -0.34 5.99 -27.94 -0.17 -0.50 16 25 C -0.14 -0.67 6.07 -28.03 -0.17 -0.84 16 26 C 0.52 4.16 7.72 -11.18 -0.09 4.07 16 27 O -0.53 -6.25 17.91 5.54 0.10 -6.15 16 28 N -0.66 -4.38 5.37 -9.96 -0.05 -4.43 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.34 5.12 8.73 -39.29 -0.34 4.78 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.37 3.27 9.04 45.56 0.41 3.68 16 38 H 0.07 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.07 0.47 7.66 -51.93 -0.40 0.07 16 40 H 0.13 0.75 6.29 -52.49 -0.33 0.42 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.10 0.25 8.06 -51.93 -0.42 -0.17 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.41 2.18 8.84 -40.82 -0.36 1.82 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -35.35 389.14 -9.37 -44.72 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.42 Total: 3.12 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -3.47 Total: -11.84 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.00 Total: -42.78 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.68 Total: -16.19 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.35 -9.37 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580769765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.141 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds