Wall clock time and date at job start Tue Mar 31 2020 21:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48502 * 109.47205 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.47292 * 29.99637 * 3 2 1 6 6 H 1.48496 * 109.47210 * 149.99854 * 3 2 1 7 7 C 1.37876 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99656 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47018 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99999 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47167 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.46562 * 60.00315 * 13 12 11 15 15 O 1.42901 * 109.47120 * 300.00228 * 13 12 11 16 16 C 1.52997 * 109.47211 * 180.02562 * 13 12 11 17 17 O 1.42898 * 109.47166 * 185.00224 * 16 13 12 18 18 C 1.35968 * 117.00023 * 180.02562 * 17 16 13 19 19 C 1.38742 * 119.98352 * 359.97438 * 18 17 16 20 20 C 1.38083 * 120.02967 * 179.69941 * 19 18 17 21 21 C 1.38845 * 119.96508 * 0.27298 * 20 19 18 22 22 C 1.38833 * 119.96637 * 0.02562 * 21 20 19 23 23 C 1.38078 * 120.02372 * 359.97438 * 22 21 20 24 24 C 1.50683 * 119.84686 * 179.97438 * 22 21 20 25 25 C 1.52896 * 109.53862 * 326.07134 * 24 22 21 26 26 C 1.50498 * 109.91071 * 48.63771 * 25 24 22 27 27 O 1.21299 * 119.62070 * 144.76598 * 26 25 24 28 28 N 1.34563 * 120.75639 * 324.73882 * 26 25 24 29 29 H 0.96997 * 120.00444 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46826 * 60.00420 * 9 7 2 31 31 H 1.09004 * 109.47170 * 300.00338 * 9 7 2 32 32 H 1.08995 * 109.47291 * 59.99499 * 10 9 7 33 33 H 1.09004 * 109.46981 * 299.99909 * 10 9 7 34 34 H 1.00907 * 110.99581 * 56.04451 * 11 10 9 35 35 H 1.09005 * 109.46834 * 60.00091 * 12 11 10 36 36 H 1.08991 * 109.47464 * 300.00149 * 12 11 10 37 37 H 0.96695 * 114.00329 * 300.00640 * 15 13 12 38 38 H 1.09003 * 109.47064 * 64.99793 * 16 13 12 39 39 H 1.09002 * 109.47059 * 305.00529 * 16 13 12 40 40 H 1.08002 * 119.98813 * 359.97438 * 19 18 17 41 41 H 1.08000 * 120.01595 * 180.29309 * 20 19 18 42 42 H 1.07991 * 120.01131 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46663 * 206.04428 * 24 22 21 44 44 H 1.08997 * 109.44192 * 86.08311 * 24 22 21 45 45 H 1.08995 * 109.40019 * 288.49735 * 25 24 22 46 46 H 1.09000 * 109.39843 * 168.76694 * 25 24 22 47 47 H 0.96996 * 119.78202 * 180.82647 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 7 5.4906 -2.6364 0.0001 12 6 6.0171 -4.0078 0.0009 13 6 7.5466 -3.9669 0.0002 14 1 7.8963 -3.4430 0.8898 15 8 8.0043 -3.2816 -1.1672 16 6 8.0949 -5.3953 0.0004 17 8 9.5187 -5.3589 0.1173 18 6 10.1675 -6.5537 0.1323 19 6 9.4467 -7.7354 0.0369 20 6 10.1052 -8.9491 0.0458 21 6 11.4888 -8.9866 0.1560 22 6 12.2087 -7.8039 0.2576 23 6 11.5493 -6.5908 0.2486 24 6 13.7101 -7.8479 0.3777 25 6 14.1234 -9.0864 1.1732 26 6 13.4187 -10.3014 0.6329 27 8 13.9917 -11.3705 0.6196 28 7 12.1600 -10.2155 0.1647 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6796 0.8895 31 1 3.8746 -0.6806 -0.8905 32 1 3.6579 -3.1505 -0.8896 33 1 3.6586 -3.1500 0.8904 34 1 5.8521 -2.1101 0.7815 35 1 5.6676 -4.5316 -0.8889 36 1 5.6676 -4.5307 0.8910 37 1 7.7295 -3.6930 -1.9979 38 1 7.8193 -5.8904 -0.9308 39 1 7.6751 -5.9455 0.8424 40 1 8.3705 -7.7058 -0.0488 41 1 9.5443 -9.8686 -0.0332 42 1 12.1096 -5.6709 0.3273 43 1 14.0598 -6.9526 0.8918 44 1 14.1525 -7.8912 -0.6175 45 1 13.8567 -8.9492 2.2211 46 1 15.2012 -9.2266 1.0908 47 1 11.7150 -11.0100 -0.1692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580769765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:28 Heat of formation + Delta-G solvation = -136.666399 kcal Electronic energy + Delta-G solvation = -26994.826744 eV Core-core repulsion = 22947.872622 eV Total energy + Delta-G solvation = -4046.954123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03298 -40.76164 -39.30528 -38.34054 -36.78157 -35.59611 -34.93596 -34.86455 -32.57854 -31.39198 -30.66148 -29.46410 -27.07487 -25.69272 -24.78313 -23.81220 -23.40829 -22.72827 -22.03574 -20.30838 -19.04557 -18.95569 -18.51586 -18.17668 -17.75567 -17.47650 -16.85074 -16.55222 -16.34175 -16.08146 -15.95120 -15.49419 -15.43639 -15.12775 -14.87350 -14.65068 -14.54907 -14.43210 -14.21704 -14.06840 -13.84639 -13.52230 -13.34477 -12.99182 -12.84913 -12.82821 -12.46554 -12.34351 -12.02045 -11.98134 -11.88181 -11.67485 -11.61581 -11.40775 -11.16945 -11.01738 -10.88632 -10.76630 -9.87790 -9.28517 -8.66106 -8.29892 -6.34388 0.17293 0.27044 1.38869 1.39151 1.46838 1.52028 2.01278 2.09389 2.37070 2.71260 3.06127 3.23172 3.40005 3.57593 3.67198 3.72309 3.87122 3.90390 4.00854 4.08509 4.12516 4.20510 4.31656 4.33759 4.37559 4.41787 4.48099 4.57076 4.70752 4.79401 4.86404 4.91973 4.93600 4.97785 5.04753 5.09143 5.18571 5.29199 5.32742 5.49780 5.57686 5.63370 5.73768 6.09669 6.12411 6.24937 6.43742 6.50463 6.74300 6.92287 6.93682 7.30982 8.86557 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.041317 B = 0.001484 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.520965 B =18867.336586 C =19349.158308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.006 4.006 10 C 0.088 3.912 11 N -0.688 5.688 12 C 0.032 3.968 13 C 0.122 3.878 14 H 0.098 0.902 15 O -0.560 6.560 16 C 0.032 3.968 17 O -0.320 6.320 18 C 0.101 3.899 19 C -0.185 4.185 20 C -0.106 4.106 21 C 0.103 3.897 22 C -0.083 4.083 23 C -0.126 4.126 24 C -0.075 4.075 25 C -0.134 4.134 26 C 0.515 3.485 27 O -0.578 6.578 28 N -0.656 5.656 29 H 0.267 0.733 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.342 0.658 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.384 0.616 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.117 0.883 44 H 0.091 0.909 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.654 -19.104 1.379 35.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.044 4.044 10 C -0.041 4.041 11 N -0.320 5.320 12 C -0.098 4.098 13 C 0.062 3.938 14 H 0.116 0.884 15 O -0.366 6.366 16 C -0.044 4.044 17 O -0.233 6.233 18 C 0.055 3.945 19 C -0.204 4.204 20 C -0.127 4.127 21 C 0.008 3.992 22 C -0.085 4.085 23 C -0.145 4.145 24 C -0.112 4.112 25 C -0.173 4.173 26 C 0.305 3.695 27 O -0.458 6.458 28 N -0.300 5.300 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.159 0.841 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.135 0.865 44 H 0.109 0.891 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 30.339 -18.798 1.222 35.711 hybrid contribution -1.483 -0.544 0.295 1.607 sum 28.855 -19.342 1.517 34.771 Atomic orbital electron populations 1.70058 1.08268 1.28208 1.52552 1.25976 0.95584 1.03482 0.94003 0.85618 0.79402 0.78208 0.79135 1.19402 1.20985 1.17101 1.21427 0.91981 0.93227 1.50644 0.94797 1.19445 0.93476 0.94756 0.96725 1.21633 0.86126 0.97221 0.99136 1.60363 1.07286 1.13872 1.50454 1.22562 0.94254 0.90501 1.02436 1.21781 0.91271 0.90614 0.90145 0.88365 1.86617 1.77827 1.55966 1.16232 1.23601 0.78494 0.98739 1.03586 1.86123 1.21436 1.27559 1.88222 1.19199 0.92508 0.84781 0.97967 1.21298 1.01282 0.91223 1.06630 1.20799 0.91594 0.99061 1.01220 1.17664 0.91837 0.84809 1.04886 1.19498 0.96602 0.90555 1.01877 1.20266 0.91209 0.98314 1.04695 1.20523 0.89530 0.98962 1.02170 1.21741 1.02558 0.90628 1.02380 1.21353 0.81000 0.91251 0.75851 1.90769 1.65851 1.32254 1.56931 1.43551 1.14893 1.10230 1.61320 0.92458 0.96318 0.96186 0.92293 0.96228 0.84060 0.89743 0.93188 0.76708 0.89838 0.89503 0.83383 0.83205 0.83585 0.86481 0.89051 0.86554 0.86026 0.74789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.53 -30.64 9.66 25.60 0.25 -30.40 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C -0.01 -0.29 4.30 29.85 0.13 -0.16 16 10 C 0.09 3.28 5.62 86.30 0.49 3.76 16 11 N -0.69 -20.24 6.37 -513.89 -3.27 -23.51 16 12 C 0.03 0.66 5.35 86.30 0.46 1.12 16 13 C 0.12 2.19 3.46 30.59 0.11 2.30 16 14 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 15 O -0.56 -12.33 13.17 -144.32 -1.90 -14.23 16 16 C 0.03 0.42 4.37 71.98 0.31 0.73 16 17 O -0.32 -5.60 10.10 -88.53 -0.89 -6.49 16 18 C 0.10 1.52 6.69 22.51 0.15 1.67 16 19 C -0.19 -2.20 9.03 22.35 0.20 -2.00 16 20 C -0.11 -1.13 9.92 22.38 0.22 -0.91 16 21 C 0.10 1.23 6.51 38.12 0.25 1.48 16 22 C -0.08 -0.93 5.66 -19.77 -0.11 -1.04 16 23 C -0.13 -1.64 9.63 22.35 0.22 -1.42 16 24 C -0.07 -0.49 5.99 29.81 0.18 -0.31 16 25 C -0.13 -1.08 6.07 29.75 0.18 -0.90 16 26 C 0.52 7.88 7.72 87.63 0.68 8.55 16 27 O -0.58 -13.64 17.91 -3.09 -0.06 -13.69 16 28 N -0.66 -8.07 5.37 -303.93 -1.63 -9.70 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 31 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.34 9.68 8.73 -89.69 -0.78 8.90 16 35 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.38 6.07 9.04 -74.06 -0.67 5.40 16 38 H 0.08 0.84 7.66 -2.39 -0.02 0.83 16 39 H 0.09 0.89 7.66 -2.39 -0.02 0.87 16 40 H 0.15 1.26 6.29 -2.91 -0.02 1.24 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.12 0.29 8.06 -2.39 -0.02 0.27 16 44 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.41 4.14 8.84 -92.71 -0.82 3.32 16 Total: -1.00 -77.04 389.14 -2.72 -79.76 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -1.31 Total: 17.27 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.17 Total: -16.67 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -4.61 Total: -92.32 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -2.85 Total: -34.42 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Total: -77.04 -2.72 -79.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580769765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.906 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds